RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 NHP2Q9NX24 153 aaKnown RBP0.86□□□□□ -2.27
PTCH1-223ENST00000551623 NAT8Q9UHE5 227 aa0.86□□□□□ -2.27
PTCH1-223ENST00000551623 TSPEAR-AS2P59090 65 aa0.85□□□□□ -2.27
PTCH1-223ENST00000551623 ADIRFQ15847 76 aa0.85□□□□□ -2.27
PTCH1-223ENST00000551623 KRTAP19-7Q3SYF9 63 aa0.85□□□□□ -2.27
PTCH1-223ENST00000551623 LINC00518Q8N0U6 118 aa0.85□□□□□ -2.27
PTCH1-223ENST00000551623 RAB37Q96AX2 223 aa0.85□□□□□ -2.27
PTCH1-223ENST00000551623 CYSTM1Q9H1C7 97 aa0.85□□□□□ -2.27
PTCH1-223ENST00000551623 C8orf87E5RJ46 101 aa0.84□□□□□ -2.27
PTCH1-223ENST00000551623 LEPROTO15243 131 aa0.84□□□□□ -2.27
PTCH1-223ENST00000551623 TIMM17BO60830 172 aa0.84□□□□□ -2.27
PTCH1-223ENST00000551623 MT1EP04732 61 aa0.84□□□□□ -2.27
PTCH1-223ENST00000551623 MT1GP13640 62 aa0.84□□□□□ -2.27
PTCH1-223ENST00000551623 SLC51BQ86UW2 128 aa0.84□□□□□ -2.27
PTCH1-223ENST00000551623 LINC00308Q8TCZ7 52 aa0.84□□□□□ -2.27
PTCH1-223ENST00000551623 MUC5BQ9HC84 5762 aaPredicted RBP0.83□□□□□ -2.28
PTCH1-223ENST00000551623 A0A087WSZ3 146 aa0.83□□□□□ -2.28
PTCH1-223ENST00000551623 C9JQL5 133 aa0.83□□□□□ -2.28
PTCH1-223ENST00000551623 H0YAA0 97 aa0.83□□□□□ -2.28
PTCH1-223ENST00000551623 SMLR1H3BR10 107 aa0.83□□□□□ -2.28
PTCH1-223ENST00000551623 J3QQQ9 107 aa0.83□□□□□ -2.28
PTCH1-223ENST00000551623 K7EQZ3 153 aa0.83□□□□□ -2.28
PTCH1-223ENST00000551623 HERVK_113P61574 105 aa0.83□□□□□ -2.28
PTCH1-223ENST00000551623 C5orf47Q569G3 176 aa0.83□□□□□ -2.28
PTCH1-223ENST00000551623 CSAG1Q6PB30 78 aa0.83□□□□□ -2.28
PTCH1-223ENST00000551623 LINC00575Q6W349 94 aa0.83□□□□□ -2.28
PTCH1-223ENST00000551623 Q6ZQY7 126 aa0.83□□□□□ -2.28
PTCH1-223ENST00000551623 OR13C6PQ8NH95 151 aa0.83□□□□□ -2.28
PTCH1-223ENST00000551623 DSCR8Q96T75 97 aa0.83□□□□□ -2.28
PTCH1-223ENST00000551623 SIGMAR1Q99720 223 aa0.83□□□□□ -2.28
PTCH1-223ENST00000551623 LINC00472Q9H8W2 130 aa0.83□□□□□ -2.28
PTCH1-223ENST00000551623 IGKV3D-7A0A0C4DH55 119 aa0.82□□□□□ -2.28
PTCH1-223ENST00000551623 A0A1B0GVX0 72 aa0.82□□□□□ -2.28
PTCH1-223ENST00000551623 IGKV4-1P06312 121 aa0.82□□□□□ -2.28
PTCH1-223ENST00000551623 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.82□□□□□ -2.28
PTCH1-223ENST00000551623 BATF3Q9NR55 127 aa0.82□□□□□ -2.28
PTCH1-223ENST00000551623 IGHV6-1A0A0B4J1U7 121 aa0.81□□□□□ -2.28
PTCH1-223ENST00000551623 TRBV7-4A0A0J9YYF1 115 aa0.81□□□□□ -2.28
PTCH1-223ENST00000551623 H3BUT2 72 aa0.81□□□□□ -2.28
PTCH1-223ENST00000551623 LINC00614P0C842 121 aa0.81□□□□□ -2.28
PTCH1-223ENST00000551623 PLNP26678 52 aa0.81□□□□□ -2.28
PTCH1-223ENST00000551623 LCA10Q71F78 164 aa0.81□□□□□ -2.28
PTCH1-223ENST00000551623 TCTE3Q8IZS6 198 aa0.81□□□□□ -2.28
PTCH1-223ENST00000551623 C18orf32Q8TCD1 76 aa0.81□□□□□ -2.28
PTCH1-223ENST00000551623 SMCO4Q9NRQ5 59 aa0.81□□□□□ -2.28
PTCH1-223ENST00000551623 hADV29S1A0JD25 119 aa0.8□□□□□ -2.28
PTCH1-223ENST00000551623 E9PLD3 99 aa0.8□□□□□ -2.28
PTCH1-223ENST00000551623 MT-ND4LP03901 98 aa0.8□□□□□ -2.28
PTCH1-223ENST00000551623 NPC2P61916 151 aa0.8□□□□□ -2.28
PTCH1-223ENST00000551623 FABP9Q0Z7S8 132 aa0.8□□□□□ -2.28
PTCH1-223ENST00000551623 COX19Q49B96 90 aa0.8□□□□□ -2.28
PTCH1-223ENST00000551623 SLC7A5P1Q8MH63 180 aa0.8□□□□□ -2.28
PTCH1-223ENST00000551623 MT1MQ8N339 61 aa0.8□□□□□ -2.28
PTCH1-223ENST00000551623 SMIM11BQ8TCY0 68 aa0.8□□□□□ -2.28
PTCH1-223ENST00000551623 PLAC4Q8WY50 150 aa0.8□□□□□ -2.28
PTCH1-223ENST00000551623 IFI27L1Q96BM0 104 aa0.8□□□□□ -2.28
PTCH1-223ENST00000551623 A8MUN3 132 aa0.79□□□□□ -2.28
PTCH1-223ENST00000551623 IFITM1P13164 125 aa0.79□□□□□ -2.28
PTCH1-223ENST00000551623 KRTAP12-3P60328 96 aa0.79□□□□□ -2.28
PTCH1-223ENST00000551623 PEA15Q15121 130 aa0.79□□□□□ -2.28
PTCH1-223ENST00000551623 PMCHL1Q16048 86 aa0.79□□□□□ -2.28
PTCH1-223ENST00000551623 C7orf65Q6ZTY9 151 aa0.79□□□□□ -2.28
PTCH1-223ENST00000551623 C2orf91Q6ZV80 131 aa0.79□□□□□ -2.28
PTCH1-223ENST00000551623 SNHG12Q9BXW3 62 aa0.79□□□□□ -2.28
PTCH1-223ENST00000551623 SEC11CQ9BY50 192 aa0.79□□□□□ -2.28
PTCH1-223ENST00000551623 S4R3F8 94 aa0.79□□□□□ -2.28
PTCH1-223ENST00000551623 J3KT08 172 aa0.78□□□□□ -2.28
PTCH1-223ENST00000551623 DPM2O94777 84 aa0.78□□□□□ -2.28
PTCH1-223ENST00000551623 VAMP3Q15836 100 aa0.78□□□□□ -2.28
PTCH1-223ENST00000551623 C4orf26Q17RF5 130 aa0.78□□□□□ -2.28
PTCH1-223ENST00000551623 COPS9Q8WXC6 57 aa0.78□□□□□ -2.28
PTCH1-223ENST00000551623 CHCHD1Q96BP2 118 aaKnown RBP0.78□□□□□ -2.28
PTCH1-223ENST00000551623 A6NDN8 102 aa0.77□□□□□ -2.29
PTCH1-223ENST00000551623 MT1LQ93083 61 aa0.77□□□□□ -2.29
PTCH1-223ENST00000551623 C8orf17Q9NRJ1 99 aa0.77□□□□□ -2.29
PTCH1-223ENST00000551623 H3BMG7 143 aa0.76□□□□□ -2.29
PTCH1-223ENST00000551623 IGKCP01834 107 aa0.76□□□□□ -2.29
PTCH1-223ENST00000551623 PDE6GP18545 87 aa0.76□□□□□ -2.29
PTCH1-223ENST00000551623 RGS21Q2M5E4 152 aa0.76□□□□□ -2.29
PTCH1-223ENST00000551623 DEFB116Q30KQ4 102 aa0.76□□□□□ -2.29
PTCH1-223ENST00000551623 BVES-AS1Q5T3Y7 98 aa0.76□□□□□ -2.29
PTCH1-223ENST00000551623 PET117Q6UWS5 81 aa0.76□□□□□ -2.29
PTCH1-223ENST00000551623 C12orf57Q99622 126 aa0.76□□□□□ -2.29
PTCH1-223ENST00000551623 TRGC2P03986 189 aa0.75□□□□□ -2.29
PTCH1-223ENST00000551623 Q5W150 140 aa0.75□□□□□ -2.29
PTCH1-223ENST00000551623 TMEM254Q8TBM7 123 aa0.75□□□□□ -2.29
PTCH1-223ENST00000551623 TRAPPC1Q9Y5R8 145 aa0.75□□□□□ -2.29
PTCH1-223ENST00000551623 MMP24-AS1A0A0U1RRL7 71 aa0.74□□□□□ -2.29
PTCH1-223ENST00000551623 A0A1B0GX51 115 aa0.74□□□□□ -2.29
PTCH1-223ENST00000551623 NDUFB1O75438 58 aa0.74□□□□□ -2.29
PTCH1-223ENST00000551623 LEPROTL1O95214 131 aa0.74□□□□□ -2.29
PTCH1-223ENST00000551623 TRACP01848 142 aa0.74□□□□□ -2.29
PTCH1-223ENST00000551623 S100PP25815 95 aa0.74□□□□□ -2.29
PTCH1-223ENST00000551623 LYRM7Q5U5X0 104 aa0.74□□□□□ -2.29
PTCH1-223ENST00000551623 MRPL34Q9BQ48 92 aaKnown RBP0.74□□□□□ -2.29
PTCH1-223ENST00000551623 HSPB8Q9UJY1 196 aa0.74□□□□□ -2.29
PTCH1-223ENST00000551623 A0A1B0GW54 56 aa0.73□□□□□ -2.29
PTCH1-223ENST00000551623 HSBP1O75506 76 aa0.73□□□□□ -2.29
PTCH1-223ENST00000551623 CCKP06307 115 aa0.73□□□□□ -2.29
PTCH1-223ENST00000551623 UQCC3Q6UW78 93 aa0.73□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms