RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 FLNCQ14315 2725 aa0.95□□□□□ -2.26
LIMA1-207ENST00000551486 MACF1Q9UPN3 7388 aaKnown RBP0.94□□□□□ -2.26
LIMA1-207ENST00000551486 DEFB131AP59861 70 aa0.94□□□□□ -2.26
LIMA1-207ENST00000551486 PRLHP81277 87 aa0.94□□□□□ -2.26
LIMA1-207ENST00000551486 UNQ6190/PRO20217Q6UXQ8 127 aa0.94□□□□□ -2.26
LIMA1-207ENST00000551486 ZDBF2Q9HCK1 2354 aa0.94□□□□□ -2.26
LIMA1-207ENST00000551486 CNTRLQ7Z7A1 2325 aa0.94□□□□□ -2.26
LIMA1-207ENST00000551486 ABCA13Q86UQ4 5058 aa0.93□□□□□ -2.26
LIMA1-207ENST00000551486 K7EIL1 84 aa0.93□□□□□ -2.26
LIMA1-207ENST00000551486 SPRR1AP35321 89 aa0.93□□□□□ -2.26
LIMA1-207ENST00000551486 FSIP2Q5CZC0 6907 aa0.93□□□□□ -2.26
LIMA1-207ENST00000551486 NCOR1O75376 2440 aa0.93□□□□□ -2.26
LIMA1-207ENST00000551486 AKAP13Q12802 2813 aa0.93□□□□□ -2.26
LIMA1-207ENST00000551486 RYR2Q92736 4967 aa0.93□□□□□ -2.26
LIMA1-207ENST00000551486 SPG11Q96JI7 2443 aa0.92□□□□□ -2.26
LIMA1-207ENST00000551486 APELAP0DMC3 54 aa0.92□□□□□ -2.26
LIMA1-207ENST00000551486 BRD3OSQ6XYD6 125 aa0.92□□□□□ -2.26
LIMA1-207ENST00000551486 NBEAL1Q6ZS30 2694 aa0.92□□□□□ -2.26
LIMA1-207ENST00000551486 BSNQ9UPA5 3926 aa0.92□□□□□ -2.26
LIMA1-207ENST00000551486 PCNX1Q96RV3 2341 aa0.92□□□□□ -2.26
LIMA1-207ENST00000551486 PRUNE2Q8WUY3 3088 aa0.91□□□□□ -2.26
LIMA1-207ENST00000551486 NF1P21359 2839 aa0.91□□□□□ -2.26
LIMA1-207ENST00000551486 MYO15AQ9UKN7 3530 aa0.91□□□□□ -2.26
LIMA1-207ENST00000551486 SPINK1P00995 79 aa0.91□□□□□ -2.26
LIMA1-207ENST00000551486 KRTAP12-1P59990 96 aa0.91□□□□□ -2.26
LIMA1-207ENST00000551486 KLK9Q2XQG4 91 aa0.91□□□□□ -2.26
LIMA1-207ENST00000551486 ZFYVE26Q68DK2 2539 aa0.91□□□□□ -2.26
LIMA1-207ENST00000551486 FLNAP21333 2647 aaKnown RBP0.91□□□□□ -2.26
LIMA1-207ENST00000551486 DNAH14Q0VDD8 3507 aa0.91□□□□□ -2.26
LIMA1-207ENST00000551486 NBEAQ8NFP9 2946 aa0.91□□□□□ -2.26
LIMA1-207ENST00000551486 CRYBG3Q68DQ2 2970 aa0.9□□□□□ -2.26
LIMA1-207ENST00000551486 VPS13AQ96RL7 3174 aa0.9□□□□□ -2.26
LIMA1-207ENST00000551486 TPRP12270 2363 aaKnown RBP0.9□□□□□ -2.27
LIMA1-207ENST00000551486 NEBP20929 6669 aa0.9□□□□□ -2.27
LIMA1-207ENST00000551486 SPRR5A0A1B0GTR4 108 aa0.9□□□□□ -2.27
LIMA1-207ENST00000551486 FAT4Q6V0I7 4981 aa0.9□□□□□ -2.27
LIMA1-207ENST00000551486 PKDREJQ9NTG1 2253 aa0.9□□□□□ -2.27
LIMA1-207ENST00000551486 C2CD3Q4AC94 2353 aa0.9□□□□□ -2.27
LIMA1-207ENST00000551486 IGF2RP11717 2491 aa0.9□□□□□ -2.27
LIMA1-207ENST00000551486 AHNAK2Q8IVF2 5795 aa0.9□□□□□ -2.27
LIMA1-207ENST00000551486 POLQO75417 2590 aa0.9□□□□□ -2.27
LIMA1-207ENST00000551486 FCGBPQ9Y6R7 5405 aaPredicted RBP0.9□□□□□ -2.27
LIMA1-207ENST00000551486 USF3Q68DE3 2245 aa0.89□□□□□ -2.27
LIMA1-207ENST00000551486 PTPRZ1P23471 2315 aaPredicted RBP0.89□□□□□ -2.27
LIMA1-207ENST00000551486 FAM208BQ5VWN6 2430 aa0.89□□□□□ -2.27
LIMA1-207ENST00000551486 CEP295Q9C0D2 2601 aa0.89□□□□□ -2.27
LIMA1-207ENST00000551486 ZANQ9Y493 2812 aa0.89□□□□□ -2.27
LIMA1-207ENST00000551486 LOC400499M0QZD8 3231 aa0.89□□□□□ -2.27
LIMA1-207ENST00000551486 TENM2Q9NT68 2774 aa0.89□□□□□ -2.27
LIMA1-207ENST00000551486 NBPF19A0A087WUL8 3843 aa0.89□□□□□ -2.27
LIMA1-207ENST00000551486 SPRR1BP22528 89 aa0.89□□□□□ -2.27
LIMA1-207ENST00000551486 DEFB1P60022 68 aa0.89□□□□□ -2.27
LIMA1-207ENST00000551486 S4R3F8 94 aa0.89□□□□□ -2.27
LIMA1-207ENST00000551486 HERC1Q15751 4861 aa0.89□□□□□ -2.27
LIMA1-207ENST00000551486 MEGF8Q7Z7M0 2845 aa0.89□□□□□ -2.27
LIMA1-207ENST00000551486 ATRQ13535 2644 aa0.89□□□□□ -2.27
LIMA1-207ENST00000551486 ROS1P08922 2347 aa0.89□□□□□ -2.27
LIMA1-207ENST00000551486 ITPR1Q14643 2758 aa0.89□□□□□ -2.27
LIMA1-207ENST00000551486 WDFY3Q8IZQ1 3526 aa0.89□□□□□ -2.27
LIMA1-207ENST00000551486 SYNE2Q8WXH0 6885 aaKnown RBP0.88□□□□□ -2.27
LIMA1-207ENST00000551486 UTP20O75691 2785 aaKnown RBP0.88□□□□□ -2.27
LIMA1-207ENST00000551486 CELSR2Q9HCU4 2923 aa0.88□□□□□ -2.27
LIMA1-207ENST00000551486 A0A0D9SG42 100 aa0.88□□□□□ -2.27
LIMA1-207ENST00000551486 H0YGG7 62 aa0.88□□□□□ -2.27
LIMA1-207ENST00000551486 H3BUA1 57 aa0.88□□□□□ -2.27
LIMA1-207ENST00000551486 DEFB103AP81534 67 aa0.88□□□□□ -2.27
LIMA1-207ENST00000551486 PRO0255Q9UI72 69 aa0.88□□□□□ -2.27
LIMA1-207ENST00000551486 CELSR1Q9NYQ6 3014 aa0.88□□□□□ -2.27
LIMA1-207ENST00000551486 USP9YO00507 2555 aaPredicted RBP0.88□□□□□ -2.27
LIMA1-207ENST00000551486 DSPP15924 2871 aaKnown RBP0.87□□□□□ -2.27
LIMA1-207ENST00000551486 TLN1Q9Y490 2541 aaKnown RBP0.87□□□□□ -2.27
LIMA1-207ENST00000551486 PIEZO2Q9H5I5 2752 aa0.87□□□□□ -2.27
LIMA1-207ENST00000551486 FRYQ5TBA9 3013 aa0.87□□□□□ -2.27
LIMA1-207ENST00000551486 NSD1Q96L73 2696 aaPredicted RBP0.87□□□□□ -2.27
LIMA1-207ENST00000551486 DEFB109BQ30KR1 87 aa0.87□□□□□ -2.27
LIMA1-207ENST00000551486 NIPBLQ6KC79 2804 aaeCLIP0.86□□□□□ -2.27
LIMA1-207ENST00000551486 SPTBN1Q01082 2364 aaKnown RBP0.85□□□□□ -2.27
LIMA1-207ENST00000551486 HERC2O95714 4834 aa0.85□□□□□ -2.27
LIMA1-207ENST00000551486 MXRA5Q9NR99 2828 aa0.85□□□□□ -2.27
LIMA1-207ENST00000551486 PRRC2CQ9Y520 2896 aaKnown RBP0.85□□□□□ -2.27
LIMA1-207ENST00000551486 HTN1P15515 57 aa0.85□□□□□ -2.27
LIMA1-207ENST00000551486 ZZEF1O43149 2961 aa0.84□□□□□ -2.27
LIMA1-207ENST00000551486 KRTAP12-4P60329 112 aa0.84□□□□□ -2.27
LIMA1-207ENST00000551486 KRTAP6-3Q3LI67 103 aa0.84□□□□□ -2.27
LIMA1-207ENST00000551486 SPTAN1Q13813 2472 aaKnown RBP0.84□□□□□ -2.28
LIMA1-207ENST00000551486 LRBAP50851 2863 aa0.84□□□□□ -2.28
LIMA1-207ENST00000551486 SPTBN2O15020 2390 aa0.84□□□□□ -2.28
LIMA1-207ENST00000551486 AHNAKQ09666 5890 aaKnown RBP0.84□□□□□ -2.28
LIMA1-207ENST00000551486 SSPOA2VEC9 5147 aa0.83□□□□□ -2.28
LIMA1-207ENST00000551486 Q5VSD8 79 aa0.83□□□□□ -2.28
LIMA1-207ENST00000551486 DEFB119Q8N690 84 aa0.83□□□□□ -2.28
LIMA1-207ENST00000551486 COX14Q96I36 57 aa0.83□□□□□ -2.28
LIMA1-207ENST00000551486 MAP1BP46821 2468 aaKnown RBP0.83□□□□□ -2.28
LIMA1-207ENST00000551486 WDR87Q6ZQQ6 2873 aa0.83□□□□□ -2.28
LIMA1-207ENST00000551486 CREBBPQ92793 2442 aa0.83□□□□□ -2.28
LIMA1-207ENST00000551486 CSMD2Q7Z408 3487 aa0.82□□□□□ -2.28
LIMA1-207ENST00000551486 DEFB108BQ8NET1 73 aa0.82□□□□□ -2.28
LIMA1-207ENST00000551486 RHPN1-AS1Q9BWJ2 59 aa0.82□□□□□ -2.28
LIMA1-207ENST00000551486 DMDP11532 3685 aa0.82□□□□□ -2.28
LIMA1-207ENST00000551486 SPENQ96T58 3664 aaKnown RBP0.82□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms