RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 C3orf22Q8N5N4 141 aa4.26□□□□□ -1.73
DEPDC4-208ENST00000549341 Q8NBF4 154 aa4.26□□□□□ -1.73
DEPDC4-208ENST00000549341 IMUPQ9GZP8 106 aa4.26□□□□□ -1.73
DEPDC4-208ENST00000549341 LINC00846Q9NV44 126 aa4.26□□□□□ -1.73
DEPDC4-208ENST00000549341 SCGB1A1P11684 91 aa4.25□□□□□ -1.73
DEPDC4-208ENST00000549341 Q6Q795 121 aa4.25□□□□□ -1.73
DEPDC4-208ENST00000549341 IGFL1Q6UW32 110 aa4.24□□□□□ -1.73
DEPDC4-208ENST00000549341 IGLV9-49A0A0B4J1Y8 123 aa4.23□□□□□ -1.73
DEPDC4-208ENST00000549341 MT-ATP8P03928 68 aa4.23□□□□□ -1.73
DEPDC4-208ENST00000549341 CRYGAP11844 174 aa4.23□□□□□ -1.73
DEPDC4-208ENST00000549341 PRR4Q16378 134 aa4.23□□□□□ -1.73
DEPDC4-208ENST00000549341 SPINK6Q6UWN8 80 aa4.23□□□□□ -1.73
DEPDC4-208ENST00000549341 Q6ZVQ6 151 aa4.23□□□□□ -1.73
DEPDC4-208ENST00000549341 TRBV7-7A0A0K0K1E9 115 aa4.22□□□□□ -1.73
DEPDC4-208ENST00000549341 CXCL6P80162 114 aa4.22□□□□□ -1.73
DEPDC4-208ENST00000549341 FAM229BQ4G0N7 80 aa4.22□□□□□ -1.73
DEPDC4-208ENST00000549341 SSBP3-AS1Q7Z2R9 100 aa4.22□□□□□ -1.73
DEPDC4-208ENST00000549341 SS18L2Q9UHA2 77 aa4.22□□□□□ -1.73
DEPDC4-208ENST00000549341 A0A1W2PNM2 257 aa4.21□□□□□ -1.74
DEPDC4-208ENST00000549341 BPY2O14599 106 aa4.21□□□□□ -1.74
DEPDC4-208ENST00000549341 MOBPQ13875 183 aa4.21□□□□□ -1.74
DEPDC4-208ENST00000549341 IGKV3D-7A0A0C4DH55 119 aa4.2□□□□□ -1.74
DEPDC4-208ENST00000549341 A0A087WSZ3 146 aa4.19□□□□□ -1.74
DEPDC4-208ENST00000549341 HIST1H4AP62805 103 aaKnown RBP4.19□□□□□ -1.74
DEPDC4-208ENST00000549341 CD164Q04900 197 aa4.19□□□□□ -1.74
DEPDC4-208ENST00000549341 CRCT1Q9UGL9 99 aa4.19□□□□□ -1.74
DEPDC4-208ENST00000549341 J3KT08 172 aa4.18□□□□□ -1.74
DEPDC4-208ENST00000549341 KRTAP10-7P60409 375 aaPredicted RBP4.18□□□□□ -1.74
DEPDC4-208ENST00000549341 PRR26Q8N8Z3 221 aa4.18□□□□□ -1.74
DEPDC4-208ENST00000549341 NDUFB1O75438 58 aa4.16□□□□□ -1.74
DEPDC4-208ENST00000549341 ANAPC11Q9NYG5 84 aa4.16□□□□□ -1.74
DEPDC4-208ENST00000549341 TYMSOSQ8TAI1 123 aa4.15□□□□□ -1.75
DEPDC4-208ENST00000549341 LIMD2Q9BT23 127 aa4.15□□□□□ -1.75
DEPDC4-208ENST00000549341 FAM236AA0A1B0GUQ0 79 aa4.14□□□□□ -1.75
DEPDC4-208ENST00000549341 FAM236BA0A1B0GV22 79 aa4.14□□□□□ -1.75
DEPDC4-208ENST00000549341 ATOX1O00244 68 aa4.14□□□□□ -1.75
DEPDC4-208ENST00000549341 SPAG11AQ6PDA7 123 aa4.14□□□□□ -1.75
DEPDC4-208ENST00000549341 HRCT1Q6UXD1 115 aa4.14□□□□□ -1.75
DEPDC4-208ENST00000549341 A0A0G2JQZ4 141 aa4.13□□□□□ -1.75
DEPDC4-208ENST00000549341 SMIM20Q8N5G0 67 aa4.13□□□□□ -1.75
DEPDC4-208ENST00000549341 ANAPC13Q9BS18 74 aa4.13□□□□□ -1.75
DEPDC4-208ENST00000549341 PCP4P48539 62 aa4.12□□□□□ -1.75
DEPDC4-208ENST00000549341 KRTAP5-11Q6L8G4 156 aa4.12□□□□□ -1.75
DEPDC4-208ENST00000549341 A0A087X002 238 aa4.11□□□□□ -1.75
DEPDC4-208ENST00000549341 A8MWP4 228 aa4.11□□□□□ -1.75
DEPDC4-208ENST00000549341 SPINK1P00995 79 aa4.11□□□□□ -1.75
DEPDC4-208ENST00000549341 IGKV4-1P06312 121 aa4.11□□□□□ -1.75
DEPDC4-208ENST00000549341 KRTAP1-4P0C5Y4 121 aa4.11□□□□□ -1.75
DEPDC4-208ENST00000549341 ASB16-AS1Q495Z4 193 aa4.11□□□□□ -1.75
DEPDC4-208ENST00000549341 LINC00472Q9H8W2 130 aa4.11□□□□□ -1.75
DEPDC4-208ENST00000549341 A0A087WVE0 104 aa4.1□□□□□ -1.75
DEPDC4-208ENST00000549341 LCE1AQ5T7P2 110 aa4.1□□□□□ -1.75
DEPDC4-208ENST00000549341 Q5XG85 94 aa4.1□□□□□ -1.75
DEPDC4-208ENST00000549341 MUC17Q685J3 4493 aa4.09□□□□□ -1.75
DEPDC4-208ENST00000549341 DSCR10P59022 87 aa4.09□□□□□ -1.75
DEPDC4-208ENST00000549341 RPS29P62273 56 aaKnown RBP4.09□□□□□ -1.75
DEPDC4-208ENST00000549341 KRTAP13-2Q52LG2 175 aa4.09□□□□□ -1.75
DEPDC4-208ENST00000549341 LINC00304Q8N9R0 145 aa4.09□□□□□ -1.75
DEPDC4-208ENST00000549341 HCG22E2RYF7 251 aa4.08□□□□□ -1.76
DEPDC4-208ENST00000549341 DEFB116Q30KQ4 102 aa4.08□□□□□ -1.76
DEPDC4-208ENST00000549341 PRR15Q8IV56 129 aa4.08□□□□□ -1.76
DEPDC4-208ENST00000549341 K7EQZ3 153 aa4.07□□□□□ -1.76
DEPDC4-208ENST00000549341 Q8N9L7 120 aa4.07□□□□□ -1.76
DEPDC4-208ENST00000549341 TRAV7A0A075B6U4 112 aa4.06□□□□□ -1.76
DEPDC4-208ENST00000549341 C8orf87E5RJ46 101 aa4.06□□□□□ -1.76
DEPDC4-208ENST00000549341 KRTAP10-6P60371 365 aaPredicted RBP4.06□□□□□ -1.76
DEPDC4-208ENST00000549341 SERP2Q8N6R1 65 aa4.06□□□□□ -1.76
DEPDC4-208ENST00000549341 A0A1B0GVX0 72 aa4.05□□□□□ -1.76
DEPDC4-208ENST00000549341 UQCRQO14949 82 aa4.05□□□□□ -1.76
DEPDC4-208ENST00000549341 CASC2Q6XLA1 102 aa4.05□□□□□ -1.76
DEPDC4-208ENST00000549341 RETNLBQ9BQ08 111 aa4.05□□□□□ -1.76
DEPDC4-208ENST00000549341 COX7CP15954 63 aa4.04□□□□□ -1.76
DEPDC4-208ENST00000549341 Q96NJ1 140 aa4.04□□□□□ -1.76
DEPDC4-208ENST00000549341 IGHV6-1A0A0B4J1U7 121 aa4.03□□□□□ -1.76
DEPDC4-208ENST00000549341 hDV103S1A0JD37 113 aa4.03□□□□□ -1.76
DEPDC4-208ENST00000549341 WFDC13Q8IUB5 93 aa4.03□□□□□ -1.76
DEPDC4-208ENST00000549341 C8orf17Q9NRJ1 99 aa4.03□□□□□ -1.76
DEPDC4-208ENST00000549341 C1orf195Q5TG92 126 aa4.02□□□□□ -1.77
DEPDC4-208ENST00000549341 LINC00313P59037 77 aa4.01□□□□□ -1.77
DEPDC4-208ENST00000549341 TMEM254Q8TBM7 123 aa4.01□□□□□ -1.77
DEPDC4-208ENST00000549341 TP53AIP1Q9HCN2 124 aa4.01□□□□□ -1.77
DEPDC4-208ENST00000549341 MMP24-AS1A0A0U1RRL7 71 aa4□□□□□ -1.77
DEPDC4-208ENST00000549341 MRPL34Q9BQ48 92 aaKnown RBP4□□□□□ -1.77
DEPDC4-208ENST00000549341 NDUFS5O43920 106 aa3.99□□□□□ -1.77
DEPDC4-208ENST00000549341 MP68P56378 58 aa3.99□□□□□ -1.77
DEPDC4-208ENST00000549341 C5orf47Q569G3 176 aa3.99□□□□□ -1.77
DEPDC4-208ENST00000549341 Q8N9P0 234 aaPredicted RBP3.99□□□□□ -1.77
DEPDC4-208ENST00000549341 IGLV7-46A0A075B6I9 117 aa3.98□□□□□ -1.77
DEPDC4-208ENST00000549341 TPRXLQ17RH7 258 aa3.98□□□□□ -1.77
DEPDC4-208ENST00000549341 OCR1Q9BZK8 76 aa3.98□□□□□ -1.77
DEPDC4-208ENST00000549341 H3BPC8 53 aa3.97□□□□□ -1.77
DEPDC4-208ENST00000549341 CCDC179H3BU77 68 aa3.97□□□□□ -1.77
DEPDC4-208ENST00000549341 NDUFC1O43677 76 aa3.97□□□□□ -1.77
DEPDC4-208ENST00000549341 C20orf197Q8N268 126 aa3.96□□□□□ -1.78
DEPDC4-208ENST00000549341 FP248Q71RG6 208 aaPredicted RBP3.95□□□□□ -1.78
DEPDC4-208ENST00000549341 H0Y9P7 68 aa3.94□□□□□ -1.78
DEPDC4-208ENST00000549341 KLKP1Q107X0 134 aa3.94□□□□□ -1.78
DEPDC4-208ENST00000549341 TRAV22A0A0B4J277 110 aa3.93□□□□□ -1.78
DEPDC4-208ENST00000549341 KRTAP4-1Q9BYQ7 146 aa3.93□□□□□ -1.78
DEPDC4-208ENST00000549341 LCE1EQ5T753 118 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 203.1 ms