RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 C1orf195Q5TG92 126 aa8.91□□□□□ -0.98
USP28-214ENST00000545540 SPAG11AQ6PDA7 123 aa8.91□□□□□ -0.98
USP28-214ENST00000545540 Q8N9P0 234 aaPredicted RBP8.91□□□□□ -0.98
USP28-214ENST00000545540 Q5VV11 94 aa8.9□□□□□ -0.98
USP28-214ENST00000545540 Q5W150 140 aa8.89□□□□□ -0.99
USP28-214ENST00000545540 LINC00483Q53H64 154 aa8.88□□□□□ -0.99
USP28-214ENST00000545540 MRPL34Q9BQ48 92 aaKnown RBP8.87□□□□□ -0.99
USP28-214ENST00000545540 KRTAP10-2P60368 255 aa8.86□□□□□ -0.99
USP28-214ENST00000545540 LRP1BQ9NZR2 4599 aa8.86□□□□□ -0.99
USP28-214ENST00000545540 C1orf134Q5TEV5 83 aa8.86□□□□□ -0.99
USP28-214ENST00000545540 SPANXA2-OT1Q8N9U9 137 aa8.86□□□□□ -0.99
USP28-214ENST00000545540 ALMS1Q8TCU4 4167 aa8.85□□□□□ -0.99
USP28-214ENST00000545540 PLAC8Q9NZF1 115 aa8.85□□□□□ -0.99
USP28-214ENST00000545540 IGLV7-46A0A075B6I9 117 aa8.84□□□□□ -0.99
USP28-214ENST00000545540 H3BPC8 53 aa8.84□□□□□ -0.99
USP28-214ENST00000545540 SPTSSBQ8NFR3 76 aa8.84□□□□□ -0.99
USP28-214ENST00000545540 ZNF706Q9Y5V0 76 aaPredicted RBP8.84□□□□□ -0.99
USP28-214ENST00000545540 Q6ZR54 194 aa8.84□□□□□ -0.99
USP28-214ENST00000545540 IGLV7-43P04211 117 aa8.83□□□□□ -1
USP28-214ENST00000545540 DNAH5Q8TE73 4624 aa8.82□□□□□ -1
USP28-214ENST00000545540 ASB16-AS1Q495Z4 193 aa8.82□□□□□ -1
USP28-214ENST00000545540 HYDINQ4G0P3 5121 aa8.81□□□□□ -1
USP28-214ENST00000545540 PRR26Q8N8Z3 221 aa8.81□□□□□ -1
USP28-214ENST00000545540 TP53AIP1Q9HCN2 124 aa8.8□□□□□ -1
USP28-214ENST00000545540 A6NED7 52 aa8.79□□□□□ -1
USP28-214ENST00000545540 HRES1P13985 223 aa8.79□□□□□ -1
USP28-214ENST00000545540 PMAIP1Q13794 54 aa8.75□□□□□ -1.01
USP28-214ENST00000545540 V9GYY9 64 aa8.75□□□□□ -1.01
USP28-214ENST00000545540 LCA10Q71F78 164 aa8.74□□□□□ -1.01
USP28-214ENST00000545540 LIMD2Q9BT23 127 aa8.74□□□□□ -1.01
USP28-214ENST00000545540 FAT2Q9NYQ8 4349 aa8.73□□□□□ -1.01
USP28-214ENST00000545540 VPS13BQ7Z7G8 4022 aa8.71□□□□□ -1.01
USP28-214ENST00000545540 KRTAP10-1P60331 282 aa8.7□□□□□ -1.02
USP28-214ENST00000545540 KRTAP13-2Q52LG2 175 aa8.7□□□□□ -1.02
USP28-214ENST00000545540 SPINK7P58062 85 aa8.69□□□□□ -1.02
USP28-214ENST00000545540 LINC00313P59037 77 aa8.66□□□□□ -1.02
USP28-214ENST00000545540 PKHD1P08F94 4074 aa8.66□□□□□ -1.02
USP28-214ENST00000545540 LOC101927531A0A1B0GV80 90 aa8.64□□□□□ -1.03
USP28-214ENST00000545540 IGKV2D-30A0A075B6S6 120 aa8.63□□□□□ -1.03
USP28-214ENST00000545540 IGKV2-30P06310 120 aa8.63□□□□□ -1.03
USP28-214ENST00000545540 KRTAP13-3Q3SY46 172 aa8.63□□□□□ -1.03
USP28-214ENST00000545540 Q75L30 129 aa8.62□□□□□ -1.03
USP28-214ENST00000545540 PKD1P98161 4303 aa8.61□□□□□ -1.03
USP28-214ENST00000545540 SSBP3-AS1Q7Z2R9 100 aa8.6□□□□□ -1.03
USP28-214ENST00000545540 LINC01558Q9Y6Z2 57 aa8.59□□□□□ -1.03
USP28-214ENST00000545540 PLA2G1BP04054 148 aaKnown RBP8.56□□□□□ -1.04
USP28-214ENST00000545540 SMR3BP02814 79 aaPredicted RBP8.55□□□□□ -1.04
USP28-214ENST00000545540 FAT1Q14517 4588 aa8.53□□□□□ -1.04
USP28-214ENST00000545540 ACYP2P14621 99 aa8.53□□□□□ -1.04
USP28-214ENST00000545540 KRTAP1-4P0C5Y4 121 aa8.52□□□□□ -1.04
USP28-214ENST00000545540 SPINK1P00995 79 aa8.52□□□□□ -1.05
USP28-214ENST00000545540 SEC61GP60059 68 aa8.52□□□□□ -1.05
USP28-214ENST00000545540 CDC42SE1Q9NRR8 79 aa8.5□□□□□ -1.05
USP28-214ENST00000545540 C8orf87E5RJ46 101 aa8.5□□□□□ -1.05
USP28-214ENST00000545540 FAM229AH3BQW9 127 aa8.5□□□□□ -1.05
USP28-214ENST00000545540 TYMSOSQ8TAI1 123 aa8.49□□□□□ -1.05
USP28-214ENST00000545540 C4orf48Q5BLP8 95 aa8.48□□□□□ -1.05
USP28-214ENST00000545540 ATP11AUNQ6ZP68 121 aa8.48□□□□□ -1.05
USP28-214ENST00000545540 KRTAP16-1A8MUX0 517 aa8.47□□□□□ -1.05
USP28-214ENST00000545540 Q8N1X5 172 aa8.47□□□□□ -1.05
USP28-214ENST00000545540 Q6ZSA8 131 aa8.45□□□□□ -1.06
USP28-214ENST00000545540 DMAC1Q96GE9 116 aa8.45□□□□□ -1.06
USP28-214ENST00000545540 C9orf92A6NGG3 77 aa8.43□□□□□ -1.06
USP28-214ENST00000545540 C7orf65Q6ZTY9 151 aa8.43□□□□□ -1.06
USP28-214ENST00000545540 A6NN06 94 aa8.42□□□□□ -1.06
USP28-214ENST00000545540 A0A1B0GU69 56 aa8.42□□□□□ -1.06
USP28-214ENST00000545540 KTN1-AS1Q86SY8 53 aa8.39□□□□□ -1.07
USP28-214ENST00000545540 ADM2Q7Z4H4 148 aa8.36□□□□□ -1.07
USP28-214ENST00000545540 PRAC1Q96KF2 57 aa8.36□□□□□ -1.07
USP28-214ENST00000545540 SACSQ9NZJ4 4579 aa8.35□□□□□ -1.07
USP28-214ENST00000545540 DYNC1H1Q14204 4646 aaKnown RBP8.35□□□□□ -1.07
USP28-214ENST00000545540 RBM12B-AS1Q9P1G2 102 aa8.32□□□□□ -1.08
USP28-214ENST00000545540 LINC00304Q8N9R0 145 aa8.31□□□□□ -1.08
USP28-214ENST00000545540 DMBT1Q9UGM3 2413 aaPredicted RBP8.29□□□□□ -1.08
USP28-214ENST00000545540 FLG2Q5D862 2391 aaPredicted RBP8.28□□□□□ -1.08
USP28-214ENST00000545540 MIR22HGQ0VDD5 57 aa8.24□□□□□ -1.09
USP28-214ENST00000545540 MYCBP2O75592 4640 aa8.23□□□□□ -1.09
USP28-214ENST00000545540 LRP1Q07954 4544 aaKnown RBP8.23□□□□□ -1.09
USP28-214ENST00000545540 KMT2CQ8NEZ4 4911 aaKnown RBP8.2□□□□□ -1.1
USP28-214ENST00000545540 UQCR11O14957 56 aa8.2□□□□□ -1.1
USP28-214ENST00000545540 APOBP04114 4563 aaKnown RBP8.18□□□□□ -1.1
USP28-214ENST00000545540 SPATA8Q6RVD6 105 aa8.16□□□□□ -1.1
USP28-214ENST00000545540 KRTAP3-1Q9BYR8 98 aa8.12□□□□□ -1.11
USP28-214ENST00000545540 PKHD1L1Q86WI1 4243 aa8.07□□□□□ -1.12
USP28-214ENST00000545540 HSPG2P98160 4391 aa8.05□□□□□ -1.12
USP28-214ENST00000545540 KRTAP10-4P60372 401 aaPredicted RBP8.03□□□□□ -1.12
USP28-214ENST00000545540 A8MUU9 505 aa8.01□□□□□ -1.13
USP28-214ENST00000545540 H0YAA0 97 aa8.01□□□□□ -1.13
USP28-214ENST00000545540 C20orf166-AS1Q96NR2 134 aa8□□□□□ -1.13
USP28-214ENST00000545540 CSAG1Q6PB30 78 aa8□□□□□ -1.13
USP28-214ENST00000545540 KRTAP21-3Q3LHN1 58 aa7.99□□□□□ -1.13
USP28-214ENST00000545540 RYR2Q92736 4967 aa7.99□□□□□ -1.13
USP28-214ENST00000545540 A0A1B0GVY2 172 aa7.99□□□□□ -1.13
USP28-214ENST00000545540 FAT3Q8TDW7 4589 aa7.96□□□□□ -1.13
USP28-214ENST00000545540 CRIPTQ9P021 101 aa7.96□□□□□ -1.13
USP28-214ENST00000545540 A0A1B0GU33 70 aa7.94□□□□□ -1.14
USP28-214ENST00000545540 RPS29P62273 56 aaKnown RBP7.94□□□□□ -1.14
USP28-214ENST00000545540 LPAP08519 4548 aa7.9□□□□□ -1.15
USP28-214ENST00000545540 TNXBP22105 4242 aa7.86□□□□□ -1.15
USP28-214ENST00000545540 KIAA1109Q2LD37 5005 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 130.7 ms