RNA–Protein interactions for RNA: ENST00000543473.1

SUDS3-204, Transcript of SDS3 homolog, SIN3A corepressor complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SUDS3, Length 4,897 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SUDS3-204ENST00000543473 PANO1I0J062 215 aa11.44□□□□□ -0.58
SUDS3-204ENST00000543473 KRTAP7-1Q8IUC3 87 aa11.43□□□□□ -0.58
SUDS3-204ENST00000543473 A0A087X002 238 aa11.42□□□□□ -0.58
SUDS3-204ENST00000543473 NOTCH2NLQ7Z3S9 236 aa11.42□□□□□ -0.58
SUDS3-204ENST00000543473 WDFY3Q8IZQ1 3526 aa11.42□□□□□ -0.58
SUDS3-204ENST00000543473 LAMA5O15230 3695 aa11.41□□□□□ -0.58
SUDS3-204ENST00000543473 DCHS1Q96JQ0 3298 aa11.41□□□□□ -0.58
SUDS3-204ENST00000543473 SPATA8Q6RVD6 105 aa11.39□□□□□ -0.59
SUDS3-204ENST00000543473 FLG2Q5D862 2391 aaPredicted RBP11.38□□□□□ -0.59
SUDS3-204ENST00000543473 KRTAP10-2P60368 255 aa11.37□□□□□ -0.59
SUDS3-204ENST00000543473 KRTAP11-1Q8IUC1 163 aa11.36□□□□□ -0.59
SUDS3-204ENST00000543473 MXRA5Q9NR99 2828 aa11.36□□□□□ -0.59
SUDS3-204ENST00000543473 KRTAP10-1P60331 282 aa11.33□□□□□ -0.6
SUDS3-204ENST00000543473 LUZP6Q538Z0 58 aa11.32□□□□□ -0.6
SUDS3-204ENST00000543473 ASPMQ8IZT6 3477 aa11.31□□□□□ -0.6
SUDS3-204ENST00000543473 DMDP11532 3685 aa11.31□□□□□ -0.6
SUDS3-204ENST00000543473 COX6B2Q6YFQ2 88 aa11.28□□□□□ -0.6
SUDS3-204ENST00000543473 H1FX-AS1Q4G0G2 97 aa11.26□□□□□ -0.61
SUDS3-204ENST00000543473 RPL37P61927 97 aaKnown RBP11.26□□□□□ -0.61
SUDS3-204ENST00000543473 ADM2Q7Z4H4 148 aa11.24□□□□□ -0.61
SUDS3-204ENST00000543473 ROMO1P60602 79 aa11.23□□□□□ -0.61
SUDS3-204ENST00000543473 S4R3F8 94 aa11.19□□□□□ -0.62
SUDS3-204ENST00000543473 Q6ZSA8 131 aa11.17□□□□□ -0.62
SUDS3-204ENST00000543473 Q6ZRN7 208 aaPredicted RBP11.16□□□□□ -0.62
SUDS3-204ENST00000543473 ZFHX4Q86UP3 3567 aa11.14□□□□□ -0.63
SUDS3-204ENST00000543473 KRTAP13-1Q8IUC0 172 aa11.12□□□□□ -0.63
SUDS3-204ENST00000543473 CAMK2N1Q7Z7J9 78 aa11.1□□□□□ -0.63
SUDS3-204ENST00000543473 Q5VSD8 79 aa11.1□□□□□ -0.63
SUDS3-204ENST00000543473 KRTAP25-1Q3LHN0 102 aa11.06□□□□□ -0.64
SUDS3-204ENST00000543473 CELSR1Q9NYQ6 3014 aa11.03□□□□□ -0.64
SUDS3-204ENST00000543473 KRTAP21-3Q3LHN1 58 aa11.02□□□□□ -0.65
SUDS3-204ENST00000543473 PDZD2O15018 2839 aa10.97□□□□□ -0.65
SUDS3-204ENST00000543473 R4GN34 69 aa10.97□□□□□ -0.65
SUDS3-204ENST00000543473 TENM1Q9UKZ4 2725 aa10.94□□□□□ -0.66
SUDS3-204ENST00000543473 TENM3Q9P273 2699 aa10.93□□□□□ -0.66
SUDS3-204ENST00000543473 A0A0A0MQY5 61 aa10.91□□□□□ -0.66
SUDS3-204ENST00000543473 KRTAP13-2Q52LG2 175 aa10.9□□□□□ -0.67
SUDS3-204ENST00000543473 SMG1Q96Q15 3661 aaKnown RBP10.83□□□□□ -0.68
SUDS3-204ENST00000543473 OTOGQ6ZRI0 2925 aa10.83□□□□□ -0.68
SUDS3-204ENST00000543473 M0QZ58 72 aa10.81□□□□□ -0.68
SUDS3-204ENST00000543473 FBN1P35555 2871 aaKnown RBP10.8□□□□□ -0.68
SUDS3-204ENST00000543473 PKD1L1Q8TDX9 2849 aa10.79□□□□□ -0.68
SUDS3-204ENST00000543473 RPS29P62273 56 aaKnown RBP10.76□□□□□ -0.69
SUDS3-204ENST00000543473 NBPF19A0A087WUL8 3843 aa10.75□□□□□ -0.69
SUDS3-204ENST00000543473 TENM2Q9NT68 2774 aa10.73□□□□□ -0.69
SUDS3-204ENST00000543473 VWFP04275 2813 aa10.72□□□□□ -0.69
SUDS3-204ENST00000543473 KRTAP16-1A8MUX0 517 aa10.72□□□□□ -0.69
SUDS3-204ENST00000543473 NDUFAF8A1L188 74 aa10.69□□□□□ -0.7
SUDS3-204ENST00000543473 A8MUU9 505 aa10.68□□□□□ -0.7
SUDS3-204ENST00000543473 CSMD1Q96PZ7 3565 aa10.68□□□□□ -0.7
SUDS3-204ENST00000543473 SEC61BP60468 96 aaKnown RBP10.67□□□□□ -0.7
SUDS3-204ENST00000543473 ZFHX3Q15911 3703 aa10.66□□□□□ -0.7
SUDS3-204ENST00000543473 M0R2T5 61 aa10.61□□□□□ -0.71
SUDS3-204ENST00000543473 TGP01266 2768 aa10.56□□□□□ -0.72
SUDS3-204ENST00000543473 SVEP1Q4LDE5 3571 aa10.56□□□□□ -0.72
SUDS3-204ENST00000543473 CSMD2Q7Z408 3487 aa10.52□□□□□ -0.72
SUDS3-204ENST00000543473 H0YAA0 97 aa10.51□□□□□ -0.73
SUDS3-204ENST00000543473 C20orf166-AS1Q96NR2 134 aa10.5□□□□□ -0.73
SUDS3-204ENST00000543473 SPENQ96T58 3664 aaKnown RBP10.49□□□□□ -0.73
SUDS3-204ENST00000543473 KRTAP1-4P0C5Y4 121 aa10.4□□□□□ -0.74
SUDS3-204ENST00000543473 CUBNO60494 3623 aa10.37□□□□□ -0.75
SUDS3-204ENST00000543473 C10orf95Q9H7T3 257 aa10.36□□□□□ -0.75
SUDS3-204ENST00000543473 KRTAP13-3Q3SY46 172 aa10.34□□□□□ -0.75
SUDS3-204ENST00000543473 BSNQ9UPA5 3926 aa10.3□□□□□ -0.76
SUDS3-204ENST00000543473 PLAC4Q8WY50 150 aa10.29□□□□□ -0.76
SUDS3-204ENST00000543473 ANK3Q12955 4377 aaKnown RBP10.19□□□□□ -0.78
SUDS3-204ENST00000543473 TRRAPQ9Y4A5 3859 aa10.14□□□□□ -0.79
SUDS3-204ENST00000543473 P0C880 135 aa10.1□□□□□ -0.79
SUDS3-204ENST00000543473 SRRM2Q9UQ35 2752 aaKnown RBP10.09□□□□□ -0.79
SUDS3-204ENST00000543473 XP32Q5T750 250 aa10.05□□□□□ -0.8
SUDS3-204ENST00000543473 TNP1P09430 55 aa10.03□□□□□ -0.8
SUDS3-204ENST00000543473 A0A1B0GVY2 172 aa10□□□□□ -0.81
SUDS3-204ENST00000543473 PP632Q6XCG6 107 aa9.98□□□□□ -0.81
SUDS3-204ENST00000543473 FBN3Q75N90 2809 aa9.94□□□□□ -0.82
SUDS3-204ENST00000543473 KRTAP10-8P60410 259 aa9.87□□□□□ -0.83
SUDS3-204ENST00000543473 TPRXLQ17RH7 258 aa9.83□□□□□ -0.84
SUDS3-204ENST00000543473 MEGF8Q7Z7M0 2845 aa9.82□□□□□ -0.84
SUDS3-204ENST00000543473 COL7A1Q02388 2944 aa9.74□□□□□ -0.85
SUDS3-204ENST00000543473 KRTAP3-1Q9BYR8 98 aa9.73□□□□□ -0.85
SUDS3-204ENST00000543473 KRTAP12-2P59991 146 aa9.73□□□□□ -0.85
SUDS3-204ENST00000543473 VPS13CQ709C8 3753 aa9.7□□□□□ -0.86
SUDS3-204ENST00000543473 ZNF469Q96JG9 3925 aaPredicted RBP9.62□□□□□ -0.87
SUDS3-204ENST00000543473 KRTAP12-1P59990 96 aa9.59□□□□□ -0.87
SUDS3-204ENST00000543473 KRTAP13-4Q3LI77 160 aa9.5□□□□□ -0.89
SUDS3-204ENST00000543473 KRTAP10-6P60371 365 aaPredicted RBP9.49□□□□□ -0.89
SUDS3-204ENST00000543473 HUWE1Q7Z6Z7 4374 aaKnown RBP9.42□□□□□ -0.9
SUDS3-204ENST00000543473 AKAP9Q99996 3911 aa9.37□□□□□ -0.91
SUDS3-204ENST00000543473 KRTAP10-10P60014 251 aa9.29□□□□□ -0.92
SUDS3-204ENST00000543473 KRTAP15-1Q3LI76 137 aa9.22□□□□□ -0.93
SUDS3-204ENST00000543473 MT1HL1P0DM35 61 aa9.19□□□□□ -0.94
SUDS3-204ENST00000543473 KRTAP3-2Q9BYR7 98 aa9.18□□□□□ -0.94
SUDS3-204ENST00000543473 KRTAP10-4P60372 401 aaPredicted RBP9.15□□□□□ -0.95
SUDS3-204ENST00000543473 KRTAP3-3Q9BYR6 98 aa9.13□□□□□ -0.95
SUDS3-204ENST00000543473 CSMD3Q7Z407 3707 aa9.13□□□□□ -0.95
SUDS3-204ENST00000543473 DNAH9Q9NYC9 4486 aa9.11□□□□□ -0.95
SUDS3-204ENST00000543473 DNHD1Q96M86 4753 aa9.06□□□□□ -0.96
SUDS3-204ENST00000543473 KRTAP4-5Q9BYR2 181 aa9.06□□□□□ -0.96
SUDS3-204ENST00000543473 PRO2289Q9P1D8 64 aa8.98□□□□□ -0.97
SUDS3-204ENST00000543473 PLECQ15149 4684 aaKnown RBP8.89□□□□□ -0.99
SUDS3-204ENST00000543473 DNAH5Q8TE73 4624 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms