RNA–Protein interactions for RNA: ENST00000542685.5

XRCC4-206, Transcript of X-ray repair cross complementing 4, humanhuman

TSL 1 (best)

Gene XRCC4, Length 1,243 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC4-206ENST00000542685 A0A087WTM6 91 aa3.3□□□□□ -1.88
XRCC4-206ENST00000542685 SPINT4Q6UDR6 99 aa3.29□□□□□ -1.88
XRCC4-206ENST00000542685 CRYBG3Q68DQ2 2970 aa3.28□□□□□ -1.88
XRCC4-206ENST00000542685 FBN2P35556 2912 aa3.27□□□□□ -1.89
XRCC4-206ENST00000542685 PANO1I0J062 215 aa3.27□□□□□ -1.89
XRCC4-206ENST00000542685 KRTAP10-1P60331 282 aa3.27□□□□□ -1.89
XRCC4-206ENST00000542685 MAP1AP78559 2803 aaPredicted RBP3.26□□□□□ -1.89
XRCC4-206ENST00000542685 TLN2Q9Y4G6 2542 aa3.26□□□□□ -1.89
XRCC4-206ENST00000542685 SETXQ7Z333 2677 aaKnown RBP3.26□□□□□ -1.89
XRCC4-206ENST00000542685 COL12A1Q99715 3063 aa3.26□□□□□ -1.89
XRCC4-206ENST00000542685 AKAP9Q99996 3911 aa3.26□□□□□ -1.89
XRCC4-206ENST00000542685 SPG11Q96JI7 2443 aa3.25□□□□□ -1.89
XRCC4-206ENST00000542685 MXRA5Q9NR99 2828 aa3.25□□□□□ -1.89
XRCC4-206ENST00000542685 CELSR2Q9HCU4 2923 aa3.25□□□□□ -1.89
XRCC4-206ENST00000542685 H0YAA0 97 aa3.24□□□□□ -1.89
XRCC4-206ENST00000542685 LCE1CQ5T751 118 aa3.24□□□□□ -1.89
XRCC4-206ENST00000542685 LCE1BQ5T7P3 118 aa3.24□□□□□ -1.89
XRCC4-206ENST00000542685 COX6B2Q6YFQ2 88 aa3.24□□□□□ -1.89
XRCC4-206ENST00000542685 CHD6Q8TD26 2715 aa3.24□□□□□ -1.89
XRCC4-206ENST00000542685 NCOR2Q9Y618 2525 aa3.24□□□□□ -1.89
XRCC4-206ENST00000542685 NAV2Q8IVL1 2488 aa3.24□□□□□ -1.89
XRCC4-206ENST00000542685 USP9XQ93008 2570 aaPredicted RBP3.23□□□□□ -1.89
XRCC4-206ENST00000542685 MYO9AB2RTY4 2548 aa3.23□□□□□ -1.89
XRCC4-206ENST00000542685 KRTAP13-1Q8IUC0 172 aa3.23□□□□□ -1.89
XRCC4-206ENST00000542685 PSORS1C2Q9UIG4 136 aa3.23□□□□□ -1.89
XRCC4-206ENST00000542685 PTPN13Q12923 2485 aa3.22□□□□□ -1.89
XRCC4-206ENST00000542685 USP9YO00507 2555 aaPredicted RBP3.22□□□□□ -1.89
XRCC4-206ENST00000542685 A0A096LNI7 61 aa3.22□□□□□ -1.89
XRCC4-206ENST00000542685 A0A0G2JQZ4 141 aa3.22□□□□□ -1.89
XRCC4-206ENST00000542685 A0A1W2PNN7 141 aa3.22□□□□□ -1.89
XRCC4-206ENST00000542685 SSBP3-AS1Q7Z2R9 100 aa3.22□□□□□ -1.89
XRCC4-206ENST00000542685 ANK3Q12955 4377 aaKnown RBP3.22□□□□□ -1.89
XRCC4-206ENST00000542685 PKD1L2Q7Z442 2459 aa3.21□□□□□ -1.89
XRCC4-206ENST00000542685 A0A1B0GU33 70 aa3.21□□□□□ -1.9
XRCC4-206ENST00000542685 PRLHP81277 87 aa3.21□□□□□ -1.9
XRCC4-206ENST00000542685 Q6ZSA8 131 aa3.21□□□□□ -1.9
XRCC4-206ENST00000542685 UBR5O95071 2799 aaPredicted RBP3.21□□□□□ -1.9
XRCC4-206ENST00000542685 ITPR1Q14643 2758 aa3.21□□□□□ -1.9
XRCC4-206ENST00000542685 JMJD1CQ15652 2540 aa3.21□□□□□ -1.9
XRCC4-206ENST00000542685 H1FX-AS1Q4G0G2 97 aa3.2□□□□□ -1.9
XRCC4-206ENST00000542685 CAMK2N1Q7Z7J9 78 aa3.2□□□□□ -1.9
XRCC4-206ENST00000542685 FN1P02751 2386 aaKnown RBP3.2□□□□□ -1.9
XRCC4-206ENST00000542685 NBPF19A0A087WUL8 3843 aa3.2□□□□□ -1.9
XRCC4-206ENST00000542685 CACNA1AO00555 2505 aa3.2□□□□□ -1.9
XRCC4-206ENST00000542685 ZANQ9Y493 2812 aa3.2□□□□□ -1.9
XRCC4-206ENST00000542685 TEX15Q9BXT5 2789 aa3.19□□□□□ -1.9
XRCC4-206ENST00000542685 NBDYA0A0U1RRE5 68 aa3.19□□□□□ -1.9
XRCC4-206ENST00000542685 ITPR3Q14573 2671 aa3.19□□□□□ -1.9
XRCC4-206ENST00000542685 UTP20O75691 2785 aaKnown RBP3.19□□□□□ -1.9
XRCC4-206ENST00000542685 HIVEP2P31629 2446 aa3.19□□□□□ -1.9
XRCC4-206ENST00000542685 CSMD2Q7Z408 3487 aa3.18□□□□□ -1.9
XRCC4-206ENST00000542685 LRRK2Q5S007 2527 aa3.18□□□□□ -1.9
XRCC4-206ENST00000542685 ACACBO00763 2458 aa3.17□□□□□ -1.9
XRCC4-206ENST00000542685 ZNF469Q96JG9 3925 aaPredicted RBP3.16□□□□□ -1.9
XRCC4-206ENST00000542685 K7EIL1 84 aa3.16□□□□□ -1.9
XRCC4-206ENST00000542685 LCE3DQ9BYE3 92 aa3.16□□□□□ -1.9
XRCC4-206ENST00000542685 EPG5Q9HCE0 2579 aa3.15□□□□□ -1.91
XRCC4-206ENST00000542685 TENM2Q9NT68 2774 aa3.15□□□□□ -1.91
XRCC4-206ENST00000542685 J3QKU1 62 aa3.14□□□□□ -1.91
XRCC4-206ENST00000542685 CRIPTQ9P021 101 aa3.14□□□□□ -1.91
XRCC4-206ENST00000542685 CFAP46Q8IYW2 2715 aa3.14□□□□□ -1.91
XRCC4-206ENST00000542685 IGSF10Q6WRI0 2623 aa3.14□□□□□ -1.91
XRCC4-206ENST00000542685 APCP25054 2843 aa3.13□□□□□ -1.91
XRCC4-206ENST00000542685 RPL37P61927 97 aaKnown RBP3.13□□□□□ -1.91
XRCC4-206ENST00000542685 CIRBP-AS1Q8TBR5 109 aa3.13□□□□□ -1.91
XRCC4-206ENST00000542685 SPACA4Q8TDM5 124 aa3.13□□□□□ -1.91
XRCC4-206ENST00000542685 SMR3AQ99954 134 aa3.13□□□□□ -1.91
XRCC4-206ENST00000542685 SPTBN4Q9H254 2564 aa3.13□□□□□ -1.91
XRCC4-206ENST00000542685 PDZD2O15018 2839 aa3.13□□□□□ -1.91
XRCC4-206ENST00000542685 ZFYVE26Q68DK2 2539 aa3.13□□□□□ -1.91
XRCC4-206ENST00000542685 CHD8Q9HCK8 2581 aa3.12□□□□□ -1.91
XRCC4-206ENST00000542685 FLNAP21333 2647 aaKnown RBP3.12□□□□□ -1.91
XRCC4-206ENST00000542685 SONP18583 2426 aaKnown RBP3.12□□□□□ -1.91
XRCC4-206ENST00000542685 CUBNO60494 3623 aa3.12□□□□□ -1.91
XRCC4-206ENST00000542685 FLNCQ14315 2725 aa3.11□□□□□ -1.91
XRCC4-206ENST00000542685 TPRXLQ17RH7 258 aa3.11□□□□□ -1.91
XRCC4-206ENST00000542685 POLQO75417 2590 aa3.11□□□□□ -1.91
XRCC4-206ENST00000542685 FAM208BQ5VWN6 2430 aa3.11□□□□□ -1.91
XRCC4-206ENST00000542685 GCN1Q92616 2671 aaKnown RBP3.1□□□□□ -1.91
XRCC4-206ENST00000542685 PP632Q6XCG6 107 aa3.1□□□□□ -1.91
XRCC4-206ENST00000542685 Q6ZRN7 208 aaPredicted RBP3.1□□□□□ -1.91
XRCC4-206ENST00000542685 DNAH1Q9P2D7 4330 aa3.1□□□□□ -1.91
XRCC4-206ENST00000542685 PIEZO1Q92508 2521 aa3.1□□□□□ -1.91
XRCC4-206ENST00000542685 APLNQ9ULZ1 77 aa3.09□□□□□ -1.91
XRCC4-206ENST00000542685 ZNF462Q96JM2 2506 aa3.09□□□□□ -1.92
XRCC4-206ENST00000542685 MYO18BQ8IUG5 2567 aa3.07□□□□□ -1.92
XRCC4-206ENST00000542685 HIVEP1P15822 2718 aa3.07□□□□□ -1.92
XRCC4-206ENST00000542685 USP24Q9UPU5 2620 aa3.06□□□□□ -1.92
XRCC4-206ENST00000542685 ABCA12Q86UK0 2595 aa3.06□□□□□ -1.92
XRCC4-206ENST00000542685 CCDC168Q8NDH2 2452 aa3.05□□□□□ -1.92
XRCC4-206ENST00000542685 NF1P21359 2839 aa3.05□□□□□ -1.92
XRCC4-206ENST00000542685 UBE2DNLQ8IWF7 75 aa3.05□□□□□ -1.92
XRCC4-206ENST00000542685 NBEAL2Q6ZNJ1 2754 aa3.04□□□□□ -1.92
XRCC4-206ENST00000542685 SPINK1P00995 79 aa3.04□□□□□ -1.92
XRCC4-206ENST00000542685 SPINK6Q6UWN8 80 aa3.03□□□□□ -1.92
XRCC4-206ENST00000542685 NIPBLQ6KC79 2804 aaeCLIP3.02□□□□□ -1.93
XRCC4-206ENST00000542685 MTORP42345 2549 aa3.01□□□□□ -1.93
XRCC4-206ENST00000542685 OTOGQ6ZRI0 2925 aa3.01□□□□□ -1.93
XRCC4-206ENST00000542685 UNC79Q9P2D8 2635 aa3.01□□□□□ -1.93
XRCC4-206ENST00000542685 ACANP16112 2415 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms