RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 DEFB116Q30KQ4 102 aa5.9□□□□□ -1.47
SS18-205ENST00000542420 WFDC13Q8IUB5 93 aa5.9□□□□□ -1.47
SS18-205ENST00000542420 Q8N9P0 234 aaPredicted RBP5.9□□□□□ -1.47
SS18-205ENST00000542420 H3BS24 57 aa5.88□□□□□ -1.47
SS18-205ENST00000542420 TENM2Q9NT68 2774 aa5.88□□□□□ -1.47
SS18-205ENST00000542420 ATP11AUNQ6ZP68 121 aa5.87□□□□□ -1.47
SS18-205ENST00000542420 SPANXA2-OT1Q8N9U9 137 aa5.87□□□□□ -1.47
SS18-205ENST00000542420 A0A1B0GVX0 72 aa5.87□□□□□ -1.47
SS18-205ENST00000542420 CHKB-CPT1BH3BT56 60 aa5.86□□□□□ -1.47
SS18-205ENST00000542420 NDUFS5O43920 106 aa5.86□□□□□ -1.47
SS18-205ENST00000542420 CDK2AP2O75956 126 aa5.86□□□□□ -1.47
SS18-205ENST00000542420 CIRBP-AS1Q8TBR5 109 aa5.86□□□□□ -1.47
SS18-205ENST00000542420 C8orf17Q9NRJ1 99 aa5.86□□□□□ -1.47
SS18-205ENST00000542420 H0Y9P7 68 aa5.85□□□□□ -1.47
SS18-205ENST00000542420 KRTAP10-2P60368 255 aa5.85□□□□□ -1.47
SS18-205ENST00000542420 Q75L30 129 aa5.85□□□□□ -1.47
SS18-205ENST00000542420 LIMD2Q9BT23 127 aa5.85□□□□□ -1.47
SS18-205ENST00000542420 KMT2AQ03164 3969 aa5.84□□□□□ -1.47
SS18-205ENST00000542420 MEGF8Q7Z7M0 2845 aa5.83□□□□□ -1.48
SS18-205ENST00000542420 LOC101927531A0A1B0GV80 90 aa5.83□□□□□ -1.48
SS18-205ENST00000542420 C8orf87E5RJ46 101 aa5.83□□□□□ -1.48
SS18-205ENST00000542420 SPTSSBQ8NFR3 76 aa5.83□□□□□ -1.48
SS18-205ENST00000542420 PRR15LQ9BU68 103 aa5.82□□□□□ -1.48
SS18-205ENST00000542420 LINC00208Q96KT6 92 aa5.81□□□□□ -1.48
SS18-205ENST00000542420 MRPL34Q9BQ48 92 aaKnown RBP5.81□□□□□ -1.48
SS18-205ENST00000542420 C7orf65Q6ZTY9 151 aa5.81□□□□□ -1.48
SS18-205ENST00000542420 FRAS1Q86XX4 4008 aa5.81□□□□□ -1.48
SS18-205ENST00000542420 KRTAP10-1P60331 282 aa5.8□□□□□ -1.48
SS18-205ENST00000542420 DNAH5Q8TE73 4624 aa5.8□□□□□ -1.48
SS18-205ENST00000542420 DNAH11Q96DT5 4516 aa5.8□□□□□ -1.48
SS18-205ENST00000542420 CDC42SE1Q9NRR8 79 aa5.79□□□□□ -1.48
SS18-205ENST00000542420 DNHD1Q96M86 4753 aa5.78□□□□□ -1.48
SS18-205ENST00000542420 ANAPC11Q9NYG5 84 aa5.77□□□□□ -1.49
SS18-205ENST00000542420 IGHV6-1A0A0B4J1U7 121 aa5.77□□□□□ -1.49
SS18-205ENST00000542420 A6NED7 52 aa5.76□□□□□ -1.49
SS18-205ENST00000542420 FBN3Q75N90 2809 aa5.76□□□□□ -1.49
SS18-205ENST00000542420 IGLV7-46A0A075B6I9 117 aa5.74□□□□□ -1.49
SS18-205ENST00000542420 RPS29P62273 56 aaKnown RBP5.74□□□□□ -1.49
SS18-205ENST00000542420 KRTAP1-4P0C5Y4 121 aa5.73□□□□□ -1.49
SS18-205ENST00000542420 KRTAP13-2Q52LG2 175 aa5.73□□□□□ -1.49
SS18-205ENST00000542420 SRRM2Q9UQ35 2752 aaKnown RBP5.72□□□□□ -1.49
SS18-205ENST00000542420 PKD1P98161 4303 aa5.72□□□□□ -1.49
SS18-205ENST00000542420 FAT2Q9NYQ8 4349 aa5.72□□□□□ -1.49
SS18-205ENST00000542420 SPINK6Q6UWN8 80 aa5.72□□□□□ -1.49
SS18-205ENST00000542420 A0A087X002 238 aa5.71□□□□□ -1.49
SS18-205ENST00000542420 COA5Q86WW8 74 aa5.71□□□□□ -1.49
SS18-205ENST00000542420 LINC01558Q9Y6Z2 57 aa5.7□□□□□ -1.5
SS18-205ENST00000542420 TGP01266 2768 aa5.7□□□□□ -1.5
SS18-205ENST00000542420 KRTAP13-3Q3SY46 172 aa5.7□□□□□ -1.5
SS18-205ENST00000542420 SPINK1P00995 79 aa5.69□□□□□ -1.5
SS18-205ENST00000542420 LINC00313P59037 77 aa5.69□□□□□ -1.5
SS18-205ENST00000542420 SPINK7P58062 85 aa5.68□□□□□ -1.5
SS18-205ENST00000542420 SPAG11AQ6PDA7 123 aa5.68□□□□□ -1.5
SS18-205ENST00000542420 NOTCH2NLQ7Z3S9 236 aa5.68□□□□□ -1.5
SS18-205ENST00000542420 A0A1B0GVY2 172 aa5.65□□□□□ -1.51
SS18-205ENST00000542420 TYMSOSQ8TAI1 123 aa5.65□□□□□ -1.51
SS18-205ENST00000542420 PRAC1Q96KF2 57 aa5.65□□□□□ -1.51
SS18-205ENST00000542420 PLA2G1BP04054 148 aaKnown RBP5.64□□□□□ -1.51
SS18-205ENST00000542420 LCE2BO14633 110 aa5.64□□□□□ -1.51
SS18-205ENST00000542420 SACSQ9NZJ4 4579 aa5.63□□□□□ -1.51
SS18-205ENST00000542420 KRTAP16-1A8MUX0 517 aa5.63□□□□□ -1.51
SS18-205ENST00000542420 ADM2Q7Z4H4 148 aa5.62□□□□□ -1.51
SS18-205ENST00000542420 LRP1BQ9NZR2 4599 aa5.61□□□□□ -1.51
SS18-205ENST00000542420 LINC01554Q52M75 96 aa5.61□□□□□ -1.51
SS18-205ENST00000542420 PCOTHQ58A44 107 aa5.6□□□□□ -1.51
SS18-205ENST00000542420 Q5W150 140 aa5.6□□□□□ -1.51
SS18-205ENST00000542420 HYDINQ4G0P3 5121 aa5.59□□□□□ -1.51
SS18-205ENST00000542420 LINC00304Q8N9R0 145 aa5.59□□□□□ -1.51
SS18-205ENST00000542420 IGKV2-30P06310 120 aa5.58□□□□□ -1.52
SS18-205ENST00000542420 LCE2CQ5TA81 110 aa5.58□□□□□ -1.52
SS18-205ENST00000542420 PRR26Q8N8Z3 221 aa5.57□□□□□ -1.52
SS18-205ENST00000542420 VPS13BQ7Z7G8 4022 aa5.56□□□□□ -1.52
SS18-205ENST00000542420 HRES1P13985 223 aa5.56□□□□□ -1.52
SS18-205ENST00000542420 KRTAP10-4P60372 401 aaPredicted RBP5.56□□□□□ -1.52
SS18-205ENST00000542420 ACYP2P14621 99 aa5.55□□□□□ -1.52
SS18-205ENST00000542420 DMAC1Q96GE9 116 aa5.55□□□□□ -1.52
SS18-205ENST00000542420 DYNC1H1Q14204 4646 aaKnown RBP5.53□□□□□ -1.52
SS18-205ENST00000542420 LCE2AQ5TA79 106 aaPredicted RBP5.51□□□□□ -1.53
SS18-205ENST00000542420 PKHD1L1Q86WI1 4243 aa5.5□□□□□ -1.53
SS18-205ENST00000542420 APOBP04114 4563 aaKnown RBP5.48□□□□□ -1.53
SS18-205ENST00000542420 C20orf166-AS1Q96NR2 134 aa5.47□□□□□ -1.53
SS18-205ENST00000542420 A8MUU9 505 aa5.46□□□□□ -1.54
SS18-205ENST00000542420 SMR3BP02814 79 aaPredicted RBP5.46□□□□□ -1.54
SS18-205ENST00000542420 IGKV2D-30A0A075B6S6 120 aa5.44□□□□□ -1.54
SS18-205ENST00000542420 SPATA8Q6RVD6 105 aa5.44□□□□□ -1.54
SS18-205ENST00000542420 PKHD1P08F94 4074 aa5.43□□□□□ -1.54
SS18-205ENST00000542420 CSAG1Q6PB30 78 aa5.41□□□□□ -1.54
SS18-205ENST00000542420 RYR2Q92736 4967 aa5.41□□□□□ -1.54
SS18-205ENST00000542420 RETNLBQ9BQ08 111 aa5.4□□□□□ -1.54
SS18-205ENST00000542420 KRTAP10-8P60410 259 aa5.38□□□□□ -1.55
SS18-205ENST00000542420 LOC100996750A0A140TA64 210 aa5.36□□□□□ -1.55
SS18-205ENST00000542420 KRTAP4-6Q9BYQ5 205 aa5.36□□□□□ -1.55
SS18-205ENST00000542420 MIR22HGQ0VDD5 57 aa5.32□□□□□ -1.56
SS18-205ENST00000542420 Q5VSD8 79 aa5.32□□□□□ -1.56
SS18-205ENST00000542420 A0A0A0MQY5 61 aa5.32□□□□□ -1.56
SS18-205ENST00000542420 A0A1B0GU69 56 aa5.32□□□□□ -1.56
SS18-205ENST00000542420 FAT1Q14517 4588 aa5.31□□□□□ -1.56
SS18-205ENST00000542420 FLG2Q5D862 2391 aaPredicted RBP5.31□□□□□ -1.56
SS18-205ENST00000542420 C9orf92A6NGG3 77 aa5.3□□□□□ -1.56
SS18-205ENST00000542420 Q8N1X5 172 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 115.9 ms