RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 Q75L30 129 aa12.09□□□□□ -0.47
TMEM260-203ENST00000539559 PSORS1C2Q9UIG4 136 aa12.09□□□□□ -0.47
TMEM260-203ENST00000539559 CDK2AP2O75956 126 aa12.09□□□□□ -0.47
TMEM260-203ENST00000539559 DNAH8Q96JB1 4490 aa12.08□□□□□ -0.48
TMEM260-203ENST00000539559 LOC101927531A0A1B0GV80 90 aa12.07□□□□□ -0.48
TMEM260-203ENST00000539559 HRES1P13985 223 aa12.07□□□□□ -0.48
TMEM260-203ENST00000539559 LINC00483Q53H64 154 aa12.07□□□□□ -0.48
TMEM260-203ENST00000539559 MRPL34Q9BQ48 92 aaKnown RBP12.07□□□□□ -0.48
TMEM260-203ENST00000539559 HECTD4Q9Y4D8 3996 aa12.03□□□□□ -0.48
TMEM260-203ENST00000539559 FBN3Q75N90 2809 aa12.02□□□□□ -0.48
TMEM260-203ENST00000539559 Q5W150 140 aa12.02□□□□□ -0.49
TMEM260-203ENST00000539559 A0A087WTM6 91 aa12.01□□□□□ -0.49
TMEM260-203ENST00000539559 IGLV5-52A0A0A0MRZ9 124 aa12□□□□□ -0.49
TMEM260-203ENST00000539559 VPS13DQ5THJ4 4388 aa12□□□□□ -0.49
TMEM260-203ENST00000539559 LINC01558Q9Y6Z2 57 aa11.99□□□□□ -0.49
TMEM260-203ENST00000539559 SPINK7P58062 85 aa11.98□□□□□ -0.49
TMEM260-203ENST00000539559 PRR26Q8N8Z3 221 aa11.98□□□□□ -0.49
TMEM260-203ENST00000539559 RTL8CO15255 209 aa11.97□□□□□ -0.49
TMEM260-203ENST00000539559 ZNF706Q9Y5V0 76 aaPredicted RBP11.97□□□□□ -0.49
TMEM260-203ENST00000539559 KMT2AQ03164 3969 aa11.96□□□□□ -0.49
TMEM260-203ENST00000539559 ZNF861PO60384 105 aa11.95□□□□□ -0.5
TMEM260-203ENST00000539559 LY6G6CO95867 125 aa11.95□□□□□ -0.5
TMEM260-203ENST00000539559 PLAC8Q9NZF1 115 aa11.95□□□□□ -0.5
TMEM260-203ENST00000539559 CIRBP-AS1Q8TBR5 109 aa11.94□□□□□ -0.5
TMEM260-203ENST00000539559 ATP11AUNQ6ZP68 121 aa11.94□□□□□ -0.5
TMEM260-203ENST00000539559 TGP01266 2768 aa11.94□□□□□ -0.5
TMEM260-203ENST00000539559 C1orf134Q5TEV5 83 aa11.94□□□□□ -0.5
TMEM260-203ENST00000539559 CDC42SE1Q9NRR8 79 aa11.93□□□□□ -0.5
TMEM260-203ENST00000539559 DNAH17Q9UFH2 4485 aa11.92□□□□□ -0.5
TMEM260-203ENST00000539559 RETNLBQ9BQ08 111 aa11.91□□□□□ -0.5
TMEM260-203ENST00000539559 KTN1-AS1Q86SY8 53 aa11.89□□□□□ -0.51
TMEM260-203ENST00000539559 DNAH2Q9P225 4427 aa11.89□□□□□ -0.51
TMEM260-203ENST00000539559 A6NN06 94 aa11.88□□□□□ -0.51
TMEM260-203ENST00000539559 KRTAP13-3Q3SY46 172 aa11.85□□□□□ -0.51
TMEM260-203ENST00000539559 IGLV7-43P04211 117 aa11.79□□□□□ -0.52
TMEM260-203ENST00000539559 RBM12B-AS1Q9P1G2 102 aa11.78□□□□□ -0.52
TMEM260-203ENST00000539559 ALMS1Q8TCU4 4167 aa11.75□□□□□ -0.53
TMEM260-203ENST00000539559 DNAH6Q9C0G6 4158 aa11.75□□□□□ -0.53
TMEM260-203ENST00000539559 ACYP2P14621 99 aa11.73□□□□□ -0.53
TMEM260-203ENST00000539559 LINC00313P59037 77 aa11.68□□□□□ -0.54
TMEM260-203ENST00000539559 DNAH11Q96DT5 4516 aa11.65□□□□□ -0.54
TMEM260-203ENST00000539559 C7orf65Q6ZTY9 151 aa11.65□□□□□ -0.54
TMEM260-203ENST00000539559 KRTAP10-2P60368 255 aa11.64□□□□□ -0.55
TMEM260-203ENST00000539559 DMAC1Q96GE9 116 aa11.64□□□□□ -0.55
TMEM260-203ENST00000539559 C8orf87E5RJ46 101 aa11.63□□□□□ -0.55
TMEM260-203ENST00000539559 SSBP3-AS1Q7Z2R9 100 aa11.62□□□□□ -0.55
TMEM260-203ENST00000539559 KRTAP13-2Q52LG2 175 aa11.61□□□□□ -0.55
TMEM260-203ENST00000539559 FAM229AH3BQW9 127 aa11.59□□□□□ -0.55
TMEM260-203ENST00000539559 IGKV2-30P06310 120 aa11.58□□□□□ -0.56
TMEM260-203ENST00000539559 A0A1B0GU69 56 aa11.57□□□□□ -0.56
TMEM260-203ENST00000539559 PRAC1Q96KF2 57 aa11.57□□□□□ -0.56
TMEM260-203ENST00000539559 IGKV2D-30A0A075B6S6 120 aa11.56□□□□□ -0.56
TMEM260-203ENST00000539559 DNAH5Q8TE73 4624 aa11.55□□□□□ -0.56
TMEM260-203ENST00000539559 ADM2Q7Z4H4 148 aa11.54□□□□□ -0.56
TMEM260-203ENST00000539559 LRP1BQ9NZR2 4599 aa11.52□□□□□ -0.57
TMEM260-203ENST00000539559 KRTAP16-1A8MUX0 517 aa11.51□□□□□ -0.57
TMEM260-203ENST00000539559 KRTAP10-1P60331 282 aa11.5□□□□□ -0.57
TMEM260-203ENST00000539559 Q6ZSA8 131 aa11.49□□□□□ -0.57
TMEM260-203ENST00000539559 HYDINQ4G0P3 5121 aa11.47□□□□□ -0.57
TMEM260-203ENST00000539559 FAT2Q9NYQ8 4349 aa11.41□□□□□ -0.58
TMEM260-203ENST00000539559 SPINK1P00995 79 aa11.4□□□□□ -0.58
TMEM260-203ENST00000539559 PKD1P98161 4303 aa11.39□□□□□ -0.59
TMEM260-203ENST00000539559 MIR22HGQ0VDD5 57 aa11.39□□□□□ -0.59
TMEM260-203ENST00000539559 SPATA8Q6RVD6 105 aa11.39□□□□□ -0.59
TMEM260-203ENST00000539559 KRTAP1-4P0C5Y4 121 aa11.37□□□□□ -0.59
TMEM260-203ENST00000539559 VPS13BQ7Z7G8 4022 aa11.36□□□□□ -0.59
TMEM260-203ENST00000539559 Q8N1X5 172 aa11.35□□□□□ -0.59
TMEM260-203ENST00000539559 UQCR11O14957 56 aa11.34□□□□□ -0.59
TMEM260-203ENST00000539559 PLA2G1BP04054 148 aaKnown RBP11.29□□□□□ -0.6
TMEM260-203ENST00000539559 SACSQ9NZJ4 4579 aa11.27□□□□□ -0.61
TMEM260-203ENST00000539559 C4orf48Q5BLP8 95 aa11.27□□□□□ -0.61
TMEM260-203ENST00000539559 TYMSOSQ8TAI1 123 aa11.25□□□□□ -0.61
TMEM260-203ENST00000539559 A0A1B0GVY2 172 aa11.19□□□□□ -0.62
TMEM260-203ENST00000539559 PKHD1P08F94 4074 aa11.15□□□□□ -0.62
TMEM260-203ENST00000539559 CSAG1Q6PB30 78 aa11.11□□□□□ -0.63
TMEM260-203ENST00000539559 C9orf92A6NGG3 77 aa11.11□□□□□ -0.63
TMEM260-203ENST00000539559 LINC01554Q52M75 96 aa11.09□□□□□ -0.63
TMEM260-203ENST00000539559 SMR3BP02814 79 aaPredicted RBP11.06□□□□□ -0.64
TMEM260-203ENST00000539559 LINC00304Q8N9R0 145 aa11.06□□□□□ -0.64
TMEM260-203ENST00000539559 RYR2Q92736 4967 aa11.02□□□□□ -0.64
TMEM260-203ENST00000539559 H0YAA0 97 aa11.02□□□□□ -0.65
TMEM260-203ENST00000539559 DYNC1H1Q14204 4646 aaKnown RBP11□□□□□ -0.65
TMEM260-203ENST00000539559 KMT2CQ8NEZ4 4911 aaKnown RBP10.98□□□□□ -0.65
TMEM260-203ENST00000539559 KRTAP3-1Q9BYR8 98 aa10.98□□□□□ -0.65
TMEM260-203ENST00000539559 KRTAP10-4P60372 401 aaPredicted RBP10.91□□□□□ -0.66
TMEM260-203ENST00000539559 FAT1Q14517 4588 aa10.88□□□□□ -0.67
TMEM260-203ENST00000539559 FLG2Q5D862 2391 aaPredicted RBP10.88□□□□□ -0.67
TMEM260-203ENST00000539559 APOBP04114 4563 aaKnown RBP10.87□□□□□ -0.67
TMEM260-203ENST00000539559 A0A1B0GU33 70 aa10.87□□□□□ -0.67
TMEM260-203ENST00000539559 A8MUU9 505 aa10.85□□□□□ -0.67
TMEM260-203ENST00000539559 C20orf166-AS1Q96NR2 134 aa10.84□□□□□ -0.67
TMEM260-203ENST00000539559 RPS29P62273 56 aaKnown RBP10.81□□□□□ -0.68
TMEM260-203ENST00000539559 H1FX-AS1Q4G0G2 97 aa10.8□□□□□ -0.68
TMEM260-203ENST00000539559 CRIPTQ9P021 101 aa10.76□□□□□ -0.69
TMEM260-203ENST00000539559 PKHD1L1Q86WI1 4243 aa10.7□□□□□ -0.7
TMEM260-203ENST00000539559 RYR3Q15413 4870 aa10.67□□□□□ -0.7
TMEM260-203ENST00000539559 KRTAP25-1Q3LHN0 102 aa10.67□□□□□ -0.7
TMEM260-203ENST00000539559 COX6B2Q6YFQ2 88 aa10.66□□□□□ -0.7
TMEM260-203ENST00000539559 Q5VSD8 79 aa10.66□□□□□ -0.7
TMEM260-203ENST00000539559 DMBT1Q9UGM3 2413 aaPredicted RBP10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms