RNA–Protein interactions for RNA: ENST00000538827.5

CD4-208, Transcript of CD4 molecule, humanhuman

TSL 1 (best)

Gene CD4, Length 985 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD4-208ENST00000538827 IGKV3D-7A0A0C4DH55 119 aa8.02□□□□□ -1.13
CD4-208ENST00000538827 LINC00643Q86TS7 51 aa8.01□□□□□ -1.13
CD4-208ENST00000538827 J3KT08 172 aa8□□□□□ -1.13
CD4-208ENST00000538827 ATP5EP2Q5VTU8 51 aa7.99□□□□□ -1.13
CD4-208ENST00000538827 Q8N9L7 120 aa7.96□□□□□ -1.14
CD4-208ENST00000538827 DSCR10P59022 87 aa7.95□□□□□ -1.14
CD4-208ENST00000538827 CXCL6P80162 114 aa7.95□□□□□ -1.14
CD4-208ENST00000538827 A8MWP4 228 aa7.94□□□□□ -1.14
CD4-208ENST00000538827 K7EQZ3 153 aa7.94□□□□□ -1.14
CD4-208ENST00000538827 NDUFB1O75438 58 aa7.94□□□□□ -1.14
CD4-208ENST00000538827 IGHV6-1A0A0B4J1U7 121 aa7.93□□□□□ -1.14
CD4-208ENST00000538827 MT-ATP8P03928 68 aa7.93□□□□□ -1.14
CD4-208ENST00000538827 PRR4Q16378 134 aa7.93□□□□□ -1.14
CD4-208ENST00000538827 A0A1B0GVX0 72 aa7.92□□□□□ -1.14
CD4-208ENST00000538827 HIST1H4AP62805 103 aaKnown RBP7.92□□□□□ -1.14
CD4-208ENST00000538827 FP248Q71RG6 208 aaPredicted RBP7.91□□□□□ -1.14
CD4-208ENST00000538827 FAT4Q6V0I7 4981 aa7.89□□□□□ -1.15
CD4-208ENST00000538827 IGLV7-46A0A075B6I9 117 aa7.89□□□□□ -1.15
CD4-208ENST00000538827 PRR15Q8IV56 129 aa7.89□□□□□ -1.15
CD4-208ENST00000538827 A0A087WVE0 104 aa7.86□□□□□ -1.15
CD4-208ENST00000538827 C9orf92A6NGG3 77 aa7.86□□□□□ -1.15
CD4-208ENST00000538827 C8orf17Q9NRJ1 99 aa7.86□□□□□ -1.15
CD4-208ENST00000538827 A0A0U1RQV1 116 aa7.85□□□□□ -1.15
CD4-208ENST00000538827 C8orf87E5RJ46 101 aa7.85□□□□□ -1.15
CD4-208ENST00000538827 WFDC13Q8IUB5 93 aa7.85□□□□□ -1.15
CD4-208ENST00000538827 MMP24-AS1A0A0U1RRL7 71 aa7.83□□□□□ -1.16
CD4-208ENST00000538827 LINC00313P59037 77 aa7.83□□□□□ -1.16
CD4-208ENST00000538827 NOTCH2NLQ7Z3S9 236 aa7.83□□□□□ -1.16
CD4-208ENST00000538827 HCG22E2RYF7 251 aa7.82□□□□□ -1.16
CD4-208ENST00000538827 CASC2Q6XLA1 102 aa7.8□□□□□ -1.16
CD4-208ENST00000538827 MUC2Q02817 5179 aa7.79□□□□□ -1.16
CD4-208ENST00000538827 IMUPQ9GZP8 106 aa7.79□□□□□ -1.16
CD4-208ENST00000538827 hDV103S1A0JD37 113 aa7.78□□□□□ -1.16
CD4-208ENST00000538827 KRTAP13-3Q3SY46 172 aa7.77□□□□□ -1.17
CD4-208ENST00000538827 TMEM254Q8TBM7 123 aa7.76□□□□□ -1.17
CD4-208ENST00000538827 FAM236AA0A1B0GUQ0 79 aa7.75□□□□□ -1.17
CD4-208ENST00000538827 FAM236BA0A1B0GV22 79 aa7.75□□□□□ -1.17
CD4-208ENST00000538827 MRPL34Q9BQ48 92 aaKnown RBP7.75□□□□□ -1.17
CD4-208ENST00000538827 LPAP08519 4548 aa7.74□□□□□ -1.17
CD4-208ENST00000538827 KRTAP16-1A8MUX0 517 aa7.74□□□□□ -1.17
CD4-208ENST00000538827 TPRXLQ17RH7 258 aa7.74□□□□□ -1.17
CD4-208ENST00000538827 NDUFS5O43920 106 aa7.73□□□□□ -1.17
CD4-208ENST00000538827 LCE2AQ5TA79 106 aaPredicted RBP7.71□□□□□ -1.18
CD4-208ENST00000538827 SCGB1A1P11684 91 aa7.7□□□□□ -1.18
CD4-208ENST00000538827 XP32Q5T750 250 aa7.7□□□□□ -1.18
CD4-208ENST00000538827 Q8N9P0 234 aaPredicted RBP7.65□□□□□ -1.18
CD4-208ENST00000538827 C20orf166-AS1Q96NR2 134 aa7.65□□□□□ -1.18
CD4-208ENST00000538827 A8MUU9 505 aa7.64□□□□□ -1.19
CD4-208ENST00000538827 RPL37P61927 97 aaKnown RBP7.63□□□□□ -1.19
CD4-208ENST00000538827 Q75L30 129 aa7.63□□□□□ -1.19
CD4-208ENST00000538827 ATOX1O00244 68 aa7.62□□□□□ -1.19
CD4-208ENST00000538827 TP53AIP1Q9HCN2 124 aa7.59□□□□□ -1.19
CD4-208ENST00000538827 CRCT1Q9UGL9 99 aa7.58□□□□□ -1.2
CD4-208ENST00000538827 ATP11AUNQ6ZP68 121 aa7.57□□□□□ -1.2
CD4-208ENST00000538827 ZCCHC13Q8WW36 166 aaKnown RBP7.57□□□□□ -1.2
CD4-208ENST00000538827 OCR1Q9BZK8 76 aa7.57□□□□□ -1.2
CD4-208ENST00000538827 UQCRQO14949 82 aa7.56□□□□□ -1.2
CD4-208ENST00000538827 SMIM20Q8N5G0 67 aa7.56□□□□□ -1.2
CD4-208ENST00000538827 TRAV7A0A075B6U4 112 aa7.54□□□□□ -1.2
CD4-208ENST00000538827 PCOTHQ58A44 107 aa7.54□□□□□ -1.2
CD4-208ENST00000538827 TRAV22A0A0B4J277 110 aa7.53□□□□□ -1.2
CD4-208ENST00000538827 H0Y9P7 68 aa7.53□□□□□ -1.2
CD4-208ENST00000538827 SEC61BP60468 96 aaKnown RBP7.52□□□□□ -1.21
CD4-208ENST00000538827 Q5W150 140 aa7.52□□□□□ -1.21
CD4-208ENST00000538827 ANAPC13Q9BS18 74 aa7.52□□□□□ -1.21
CD4-208ENST00000538827 SERP2Q8N6R1 65 aa7.5□□□□□ -1.21
CD4-208ENST00000538827 MP68P56378 58 aa7.49□□□□□ -1.21
CD4-208ENST00000538827 MUC17Q685J3 4493 aa7.48□□□□□ -1.21
CD4-208ENST00000538827 FSIP2Q5CZC0 6907 aa7.48□□□□□ -1.21
CD4-208ENST00000538827 IGKV2D-30A0A075B6S6 120 aa7.46□□□□□ -1.22
CD4-208ENST00000538827 IGKV2-30P06310 120 aa7.46□□□□□ -1.22
CD4-208ENST00000538827 C5orf47Q569G3 176 aa7.46□□□□□ -1.22
CD4-208ENST00000538827 COX7CP15954 63 aa7.44□□□□□ -1.22
CD4-208ENST00000538827 LINC00208Q96KT6 92 aa7.44□□□□□ -1.22
CD4-208ENST00000538827 LOC101927531A0A1B0GV80 90 aa7.42□□□□□ -1.22
CD4-208ENST00000538827 C7orf65Q6ZTY9 151 aa7.42□□□□□ -1.22
CD4-208ENST00000538827 C20orf197Q8N268 126 aa7.41□□□□□ -1.22
CD4-208ENST00000538827 C1orf64Q8NEQ6 169 aa7.41□□□□□ -1.22
CD4-208ENST00000538827 H3BPC8 53 aa7.4□□□□□ -1.22
CD4-208ENST00000538827 LCE2BO14633 110 aa7.39□□□□□ -1.23
CD4-208ENST00000538827 SNURFQ9Y675 71 aa7.39□□□□□ -1.23
CD4-208ENST00000538827 SPINK7P58062 85 aa7.38□□□□□ -1.23
CD4-208ENST00000538827 CCDC179H3BU77 68 aa7.34□□□□□ -1.23
CD4-208ENST00000538827 CYP4F30PQ9H0H9 118 aa7.34□□□□□ -1.23
CD4-208ENST00000538827 KRTAP4-1Q9BYQ7 146 aa7.33□□□□□ -1.24
CD4-208ENST00000538827 KLKP1Q107X0 134 aa7.3□□□□□ -1.24
CD4-208ENST00000538827 PCP4P48539 62 aa7.28□□□□□ -1.24
CD4-208ENST00000538827 HRES1P13985 223 aa7.27□□□□□ -1.25
CD4-208ENST00000538827 CYSTM1Q9H1C7 97 aa7.25□□□□□ -1.25
CD4-208ENST00000538827 C4orf26Q17RF5 130 aa7.24□□□□□ -1.25
CD4-208ENST00000538827 FAM236DA0A1B0GTK5 79 aa7.22□□□□□ -1.25
CD4-208ENST00000538827 FAM236CP0DP71 79 aa7.22□□□□□ -1.25
CD4-208ENST00000538827 RBM12B-AS1Q9P1G2 102 aa7.22□□□□□ -1.25
CD4-208ENST00000538827 NDUFC1O43677 76 aa7.21□□□□□ -1.26
CD4-208ENST00000538827 KRTAP9-7A8MTY7 169 aa7.19□□□□□ -1.26
CD4-208ENST00000538827 H7BZZ5 65 aa7.17□□□□□ -1.26
CD4-208ENST00000538827 COX6B2Q6YFQ2 88 aa7.16□□□□□ -1.26
CD4-208ENST00000538827 MPLKIPQ8TAP9 179 aa7.15□□□□□ -1.26
CD4-208ENST00000538827 SPANXA2-OT1Q8N9U9 137 aa7.12□□□□□ -1.27
CD4-208ENST00000538827 DMAC1Q96GE9 116 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms