RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 KRTAP9-8Q9BYQ0 159 aa4.89□□□□□ -1.63
USP28-205ENST00000537706 C9orf92A6NGG3 77 aa4.89□□□□□ -1.63
USP28-205ENST00000537706 B5MCH6 92 aa4.89□□□□□ -1.63
USP28-205ENST00000537706 SSBP3-AS1Q7Z2R9 100 aa4.89□□□□□ -1.63
USP28-205ENST00000537706 DSCR8Q96T75 97 aa4.89□□□□□ -1.63
USP28-205ENST00000537706 ETDCA0A1B0GVM5 59 aa4.88□□□□□ -1.63
USP28-205ENST00000537706 ATP5EP2Q5VTU8 51 aa4.88□□□□□ -1.63
USP28-205ENST00000537706 TRBV7-4A0A0J9YYF1 115 aa4.87□□□□□ -1.63
USP28-205ENST00000537706 NDUFV3P56181 108 aaKnown RBP4.87□□□□□ -1.63
USP28-205ENST00000537706 LCE2BO14633 110 aa4.87□□□□□ -1.63
USP28-205ENST00000537706 Q9BRP9 147 aa4.87□□□□□ -1.63
USP28-205ENST00000537706 ANAPC13Q9BS18 74 aa4.86□□□□□ -1.63
USP28-205ENST00000537706 MOBPQ13875 183 aa4.85□□□□□ -1.63
USP28-205ENST00000537706 NEBP20929 6669 aa4.85□□□□□ -1.63
USP28-205ENST00000537706 IGLV5-48A0A075B6I7 105 aa4.85□□□□□ -1.63
USP28-205ENST00000537706 KRTAP19-6Q3LI70 58 aa4.85□□□□□ -1.63
USP28-205ENST00000537706 UBL5Q9BZL1 73 aa4.85□□□□□ -1.63
USP28-205ENST00000537706 IGLV9-49A0A0B4J1Y8 123 aa4.84□□□□□ -1.63
USP28-205ENST00000537706 FAM236AA0A1B0GUQ0 79 aa4.84□□□□□ -1.64
USP28-205ENST00000537706 FAM236BA0A1B0GV22 79 aa4.84□□□□□ -1.64
USP28-205ENST00000537706 LIMD2Q9BT23 127 aa4.83□□□□□ -1.64
USP28-205ENST00000537706 IGKV3D-7A0A0C4DH55 119 aa4.82□□□□□ -1.64
USP28-205ENST00000537706 HIST1H4AP62805 103 aaKnown RBP4.82□□□□□ -1.64
USP28-205ENST00000537706 RPL37P61927 97 aaKnown RBP4.82□□□□□ -1.64
USP28-205ENST00000537706 ERC2-IT1O76042 136 aa4.81□□□□□ -1.64
USP28-205ENST00000537706 Q6ZVQ6 151 aa4.81□□□□□ -1.64
USP28-205ENST00000537706 DEFB105AQ8NG35 78 aa4.81□□□□□ -1.64
USP28-205ENST00000537706 ST20-AS1Q8NBB2 130 aa4.8□□□□□ -1.64
USP28-205ENST00000537706 A0A1B0GW54 56 aa4.8□□□□□ -1.64
USP28-205ENST00000537706 KRTAP10-10P60014 251 aa4.8□□□□□ -1.64
USP28-205ENST00000537706 LINC00483Q53H64 154 aa4.8□□□□□ -1.64
USP28-205ENST00000537706 ATOX1O00244 68 aa4.79□□□□□ -1.64
USP28-205ENST00000537706 MT2AP02795 61 aa4.79□□□□□ -1.64
USP28-205ENST00000537706 CXCL6P80162 114 aa4.79□□□□□ -1.64
USP28-205ENST00000537706 C9orf153Q5TBE3 101 aa4.78□□□□□ -1.64
USP28-205ENST00000537706 A0A087WVE0 104 aa4.78□□□□□ -1.64
USP28-205ENST00000537706 KRTAP9-3Q9BYQ3 159 aa4.78□□□□□ -1.64
USP28-205ENST00000537706 F8WEM9 126 aa4.77□□□□□ -1.65
USP28-205ENST00000537706 SMIM29Q86T20 159 aa4.76□□□□□ -1.65
USP28-205ENST00000537706 A0A1W2PNM2 257 aa4.75□□□□□ -1.65
USP28-205ENST00000537706 CCDC179H3BU77 68 aa4.75□□□□□ -1.65
USP28-205ENST00000537706 SPRR1BP22528 89 aa4.75□□□□□ -1.65
USP28-205ENST00000537706 MT1FP04733 61 aa4.74□□□□□ -1.65
USP28-205ENST00000537706 UQCRQO14949 82 aa4.73□□□□□ -1.65
USP28-205ENST00000537706 NREPQ16612 68 aa4.73□□□□□ -1.65
USP28-205ENST00000537706 COX7CP15954 63 aa4.72□□□□□ -1.65
USP28-205ENST00000537706 IGFL1Q6UW32 110 aa4.72□□□□□ -1.65
USP28-205ENST00000537706 SERP2Q8N6R1 65 aa4.72□□□□□ -1.65
USP28-205ENST00000537706 BPY2O14599 106 aa4.7□□□□□ -1.66
USP28-205ENST00000537706 ATP11AUNQ6ZP68 121 aa4.7□□□□□ -1.66
USP28-205ENST00000537706 IGKV4-1P06312 121 aa4.69□□□□□ -1.66
USP28-205ENST00000537706 HRCT1Q6UXD1 115 aa4.69□□□□□ -1.66
USP28-205ENST00000537706 SMIM20Q8N5G0 67 aa4.69□□□□□ -1.66
USP28-205ENST00000537706 KRTAP2-3P0C7H8 128 aa4.68□□□□□ -1.66
USP28-205ENST00000537706 KRTAP2-4Q9BYR9 128 aa4.68□□□□□ -1.66
USP28-205ENST00000537706 Q8N9L7 120 aa4.66□□□□□ -1.66
USP28-205ENST00000537706 TRAV7A0A075B6U4 112 aa4.66□□□□□ -1.66
USP28-205ENST00000537706 A0A0G2JQZ4 141 aa4.66□□□□□ -1.66
USP28-205ENST00000537706 A0A087WSZ3 146 aa4.65□□□□□ -1.67
USP28-205ENST00000537706 FAM236DA0A1B0GTK5 79 aa4.64□□□□□ -1.67
USP28-205ENST00000537706 FAM236CP0DP71 79 aa4.64□□□□□ -1.67
USP28-205ENST00000537706 DSCR10P59022 87 aa4.64□□□□□ -1.67
USP28-205ENST00000537706 C20orf166-AS1Q96NR2 134 aa4.64□□□□□ -1.67
USP28-205ENST00000537706 MUC12Q9UKN1 5478 aa4.63□□□□□ -1.67
USP28-205ENST00000537706 SS18L2Q9UHA2 77 aa4.62□□□□□ -1.67
USP28-205ENST00000537706 K7EQZ3 153 aa4.62□□□□□ -1.67
USP28-205ENST00000537706 CD164Q04900 197 aa4.62□□□□□ -1.67
USP28-205ENST00000537706 OCR1Q9BZK8 76 aa4.6□□□□□ -1.67
USP28-205ENST00000537706 CYSTM1Q9H1C7 97 aa4.6□□□□□ -1.67
USP28-205ENST00000537706 TMEM258P61165 79 aa4.6□□□□□ -1.67
USP28-205ENST00000537706 C20orf197Q8N268 126 aa4.6□□□□□ -1.67
USP28-205ENST00000537706 HCG22E2RYF7 251 aa4.59□□□□□ -1.67
USP28-205ENST00000537706 KLKP1Q107X0 134 aa4.59□□□□□ -1.67
USP28-205ENST00000537706 C1orf195Q5TG92 126 aa4.59□□□□□ -1.67
USP28-205ENST00000537706 LINC00472Q9H8W2 130 aa4.59□□□□□ -1.67
USP28-205ENST00000537706 J3KT08 172 aa4.58□□□□□ -1.68
USP28-205ENST00000537706 Q5XG85 94 aa4.58□□□□□ -1.68
USP28-205ENST00000537706 Q75L30 129 aa4.58□□□□□ -1.68
USP28-205ENST00000537706 A8MWP4 228 aa4.58□□□□□ -1.68
USP28-205ENST00000537706 DEFB116Q30KQ4 102 aa4.56□□□□□ -1.68
USP28-205ENST00000537706 PRR15Q8IV56 129 aa4.56□□□□□ -1.68
USP28-205ENST00000537706 TMEM254Q8TBM7 123 aa4.56□□□□□ -1.68
USP28-205ENST00000537706 Q96NJ1 140 aa4.56□□□□□ -1.68
USP28-205ENST00000537706 H7BZZ5 65 aa4.54□□□□□ -1.68
USP28-205ENST00000537706 NDUFC1O43677 76 aa4.54□□□□□ -1.68
USP28-205ENST00000537706 RBM12B-AS1Q9P1G2 102 aa4.54□□□□□ -1.68
USP28-205ENST00000537706 SNURFQ9Y675 71 aa4.54□□□□□ -1.68
USP28-205ENST00000537706 NDUFB1O75438 58 aa4.52□□□□□ -1.69
USP28-205ENST00000537706 CASC2Q6XLA1 102 aa4.52□□□□□ -1.69
USP28-205ENST00000537706 WFDC13Q8IUB5 93 aa4.52□□□□□ -1.69
USP28-205ENST00000537706 MMP24-AS1A0A0U1RRL7 71 aa4.51□□□□□ -1.69
USP28-205ENST00000537706 KRTAP5-9P26371 169 aa4.5□□□□□ -1.69
USP28-205ENST00000537706 KRTAP3-3Q9BYR6 98 aa4.5□□□□□ -1.69
USP28-205ENST00000537706 KRTAP3-2Q9BYR7 98 aa4.5□□□□□ -1.69
USP28-205ENST00000537706 ATP5EP56381 51 aaPredicted RBP4.5□□□□□ -1.69
USP28-205ENST00000537706 C5orf47Q569G3 176 aa4.5□□□□□ -1.69
USP28-205ENST00000537706 KRTAP2-2Q9BYT5 123 aa4.5□□□□□ -1.69
USP28-205ENST00000537706 KRTAP2-1Q9BYU5 128 aa4.5□□□□□ -1.69
USP28-205ENST00000537706 A0A1B0GVX0 72 aa4.49□□□□□ -1.69
USP28-205ENST00000537706 RPS28P62857 69 aaKnown RBP4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms