RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 LORP23490 312 aaPredicted RBP7.62□□□□□ -1.19
USP28-204ENST00000537642 M0R2T5 61 aa7.61□□□□□ -1.19
USP28-204ENST00000537642 BATFQ16520 125 aa7.61□□□□□ -1.19
USP28-204ENST00000537642 JMJD7-PLA2G4BH0Y9G9 81 aa7.59□□□□□ -1.19
USP28-204ENST00000537642 Q6ZQT0 140 aa7.59□□□□□ -1.19
USP28-204ENST00000537642 A0A1B0GVX0 72 aa7.58□□□□□ -1.2
USP28-204ENST00000537642 C21orf62-AS1Q17RA5 79 aa7.58□□□□□ -1.2
USP28-204ENST00000537642 LOC110117498A0A087WWA1 95 aa7.57□□□□□ -1.2
USP28-204ENST00000537642 KRTAP9-6A0A140TA67 174 aa7.57□□□□□ -1.2
USP28-204ENST00000537642 LYRM7Q5U5X0 104 aa7.57□□□□□ -1.2
USP28-204ENST00000537642 C8orf87E5RJ46 101 aa7.56□□□□□ -1.2
USP28-204ENST00000537642 J3KT08 172 aa7.56□□□□□ -1.2
USP28-204ENST00000537642 TAX1BP3O14907 124 aa7.56□□□□□ -1.2
USP28-204ENST00000537642 TRBV20-1A0A075B6N2 111 aa7.55□□□□□ -1.2
USP28-204ENST00000537642 C14orf132Q9NPU4 83 aa7.54□□□□□ -1.2
USP28-204ENST00000537642 PDE6GP18545 87 aa7.53□□□□□ -1.2
USP28-204ENST00000537642 A0A1B0GW54 56 aa7.52□□□□□ -1.21
USP28-204ENST00000537642 C9orf118A6NHY6 69 aa7.52□□□□□ -1.21
USP28-204ENST00000537642 K7ERU9 68 aa7.5□□□□□ -1.21
USP28-204ENST00000537642 PCP4P48539 62 aa7.5□□□□□ -1.21
USP28-204ENST00000537642 GTF2H5Q6ZYL4 71 aa7.5□□□□□ -1.21
USP28-204ENST00000537642 A0A1W2PPM0 123 aa7.48□□□□□ -1.21
USP28-204ENST00000537642 NDUFB1O75438 58 aa7.48□□□□□ -1.21
USP28-204ENST00000537642 A8MWP4 228 aa7.47□□□□□ -1.21
USP28-204ENST00000537642 HRES1P13985 223 aa7.47□□□□□ -1.21
USP28-204ENST00000537642 IGKV3D-7A0A0C4DH55 119 aa7.46□□□□□ -1.22
USP28-204ENST00000537642 H3BT86 120 aa7.46□□□□□ -1.22
USP28-204ENST00000537642 MTURNQ8N3F0 131 aa7.46□□□□□ -1.22
USP28-204ENST00000537642 MPLKIPQ8TAP9 179 aa7.46□□□□□ -1.22
USP28-204ENST00000537642 K7EP34 96 aa7.45□□□□□ -1.22
USP28-204ENST00000537642 Q8N9P0 234 aaPredicted RBP7.45□□□□□ -1.22
USP28-204ENST00000537642 ZCCHC13Q8WW36 166 aaKnown RBP7.45□□□□□ -1.22
USP28-204ENST00000537642 C8orf17Q9NRJ1 99 aa7.45□□□□□ -1.22
USP28-204ENST00000537642 FSIP2Q5CZC0 6907 aa7.44□□□□□ -1.22
USP28-204ENST00000537642 NREPQ16612 68 aa7.43□□□□□ -1.22
USP28-204ENST00000537642 FAM236DA0A1B0GTK5 79 aa7.42□□□□□ -1.22
USP28-204ENST00000537642 FAM236CP0DP71 79 aa7.42□□□□□ -1.22
USP28-204ENST00000537642 CRCT1Q9UGL9 99 aa7.42□□□□□ -1.22
USP28-204ENST00000537642 PRR15Q8IV56 129 aa7.41□□□□□ -1.22
USP28-204ENST00000537642 RBM12B-AS1Q9P1G2 102 aa7.41□□□□□ -1.22
USP28-204ENST00000537642 Q6ZVQ6 151 aa7.38□□□□□ -1.23
USP28-204ENST00000537642 SCGB1A1P11684 91 aa7.37□□□□□ -1.23
USP28-204ENST00000537642 SPINK7P58062 85 aa7.37□□□□□ -1.23
USP28-204ENST00000537642 KRTAP9-8Q9BYQ0 159 aa7.37□□□□□ -1.23
USP28-204ENST00000537642 SPCS1Q9Y6A9 102 aa7.37□□□□□ -1.23
USP28-204ENST00000537642 MMP24-AS1A0A0U1RRL7 71 aa7.36□□□□□ -1.23
USP28-204ENST00000537642 F8W1H4 67 aa7.35□□□□□ -1.23
USP28-204ENST00000537642 SMCPP49901 116 aaPredicted RBP7.34□□□□□ -1.23
USP28-204ENST00000537642 J3QR89 54 aa7.33□□□□□ -1.24
USP28-204ENST00000537642 K7EQZ3 153 aa7.33□□□□□ -1.24
USP28-204ENST00000537642 TMEM254Q8TBM7 123 aa7.33□□□□□ -1.24
USP28-204ENST00000537642 MRPL34Q9BQ48 92 aaKnown RBP7.32□□□□□ -1.24
USP28-204ENST00000537642 hDV103S1A0JD37 113 aa7.3□□□□□ -1.24
USP28-204ENST00000537642 BPY2O14599 106 aa7.3□□□□□ -1.24
USP28-204ENST00000537642 PRO0461Q9UI25 63 aa7.28□□□□□ -1.24
USP28-204ENST00000537642 MT2AP02795 61 aa7.27□□□□□ -1.25
USP28-204ENST00000537642 WFDC13Q8IUB5 93 aa7.27□□□□□ -1.25
USP28-204ENST00000537642 NDUFS5O43920 106 aa7.25□□□□□ -1.25
USP28-204ENST00000537642 Q8N9L7 120 aa7.25□□□□□ -1.25
USP28-204ENST00000537642 MT1FP04733 61 aa7.22□□□□□ -1.25
USP28-204ENST00000537642 USH2AO75445 5202 aa7.21□□□□□ -1.25
USP28-204ENST00000537642 LINC00846Q9NV44 126 aa7.21□□□□□ -1.26
USP28-204ENST00000537642 Q5W150 140 aa7.19□□□□□ -1.26
USP28-204ENST00000537642 CASC2Q6XLA1 102 aa7.19□□□□□ -1.26
USP28-204ENST00000537642 UBL5Q9BZL1 73 aa7.17□□□□□ -1.26
USP28-204ENST00000537642 HCG22E2RYF7 251 aa7.16□□□□□ -1.26
USP28-204ENST00000537642 KRTAP10-10P60014 251 aa7.16□□□□□ -1.26
USP28-204ENST00000537642 IGKV2D-30A0A075B6S6 120 aa7.15□□□□□ -1.26
USP28-204ENST00000537642 IGKV2-30P06310 120 aa7.15□□□□□ -1.26
USP28-204ENST00000537642 ETDBQ3ZM63 59 aa7.15□□□□□ -1.26
USP28-204ENST00000537642 SSPOA2VEC9 5147 aa7.15□□□□□ -1.27
USP28-204ENST00000537642 KRTAP9-3Q9BYQ3 159 aa7.14□□□□□ -1.27
USP28-204ENST00000537642 C7orf65Q6ZTY9 151 aa7.13□□□□□ -1.27
USP28-204ENST00000537642 LCE2BO14633 110 aa7.11□□□□□ -1.27
USP28-204ENST00000537642 CXCL6P80162 114 aa7.1□□□□□ -1.27
USP28-204ENST00000537642 H1FX-AS1Q4G0G2 97 aa7.1□□□□□ -1.27
USP28-204ENST00000537642 FAM240AA0A1B0GVK7 77 aa7.04□□□□□ -1.28
USP28-204ENST00000537642 C4orf26Q17RF5 130 aa7.02□□□□□ -1.29
USP28-204ENST00000537642 MT-ATP8P03928 68 aa6.97□□□□□ -1.29
USP28-204ENST00000537642 TP53AIP1Q9HCN2 124 aa6.97□□□□□ -1.29
USP28-204ENST00000537642 FCGBPQ9Y6R7 5405 aaPredicted RBP6.96□□□□□ -1.29
USP28-204ENST00000537642 ACYP1P07311 99 aa6.96□□□□□ -1.3
USP28-204ENST00000537642 KRTAP19-1Q8IUB9 90 aa6.96□□□□□ -1.3
USP28-204ENST00000537642 KRTAP3-1Q9BYR8 98 aa6.95□□□□□ -1.3
USP28-204ENST00000537642 IMUPQ9GZP8 106 aa6.94□□□□□ -1.3
USP28-204ENST00000537642 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.91□□□□□ -1.3
USP28-204ENST00000537642 C1orf64Q8NEQ6 169 aa6.9□□□□□ -1.3
USP28-204ENST00000537642 ANAPC13Q9BS18 74 aa6.9□□□□□ -1.3
USP28-204ENST00000537642 C5orf47Q569G3 176 aa6.87□□□□□ -1.31
USP28-204ENST00000537642 SVIPQ8NHG7 77 aa6.87□□□□□ -1.31
USP28-204ENST00000537642 S4R3F8 94 aa6.86□□□□□ -1.31
USP28-204ENST00000537642 ATP5EP2Q5VTU8 51 aa6.85□□□□□ -1.31
USP28-204ENST00000537642 KRTAP19-6Q3LI70 58 aa6.84□□□□□ -1.31
USP28-204ENST00000537642 LINC00643Q86TS7 51 aa6.84□□□□□ -1.31
USP28-204ENST00000537642 CYP4F30PQ9H0H9 118 aa6.84□□□□□ -1.31
USP28-204ENST00000537642 TRAV22A0A0B4J277 110 aa6.82□□□□□ -1.32
USP28-204ENST00000537642 HIST1H4AP62805 103 aaKnown RBP6.82□□□□□ -1.32
USP28-204ENST00000537642 LCA10Q71F78 164 aa6.82□□□□□ -1.32
USP28-204ENST00000537642 KRTAP9-7A8MTY7 169 aa6.81□□□□□ -1.32
USP28-204ENST00000537642 CSAG1Q6PB30 78 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms