RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 INE1O15225 51 aa1.24□□□□□ -2.21
SKA3-207ENST00000536239 DMXL1Q9Y485 3027 aa1.24□□□□□ -2.21
SKA3-207ENST00000536239 PRRC2CQ9Y520 2896 aaKnown RBP1.24□□□□□ -2.21
SKA3-207ENST00000536239 COL12A1Q99715 3063 aa1.23□□□□□ -2.21
SKA3-207ENST00000536239 GVINP1Q7Z2Y8 2422 aa1.23□□□□□ -2.21
SKA3-207ENST00000536239 HTN3P15516 51 aa1.23□□□□□ -2.21
SKA3-207ENST00000536239 SPINK6Q6UWN8 80 aa1.23□□□□□ -2.21
SKA3-207ENST00000536239 Q6ZRN7 208 aaPredicted RBP1.23□□□□□ -2.21
SKA3-207ENST00000536239 R4GN34 69 aa1.23□□□□□ -2.21
SKA3-207ENST00000536239 HTTP42858 3142 aa1.23□□□□□ -2.21
SKA3-207ENST00000536239 SPEGQ15772 3267 aa1.23□□□□□ -2.21
SKA3-207ENST00000536239 UBR5O95071 2799 aaPredicted RBP1.22□□□□□ -2.21
SKA3-207ENST00000536239 DEFB135Q30KP9 77 aa1.22□□□□□ -2.21
SKA3-207ENST00000536239 UBE2DNLQ8IWF7 75 aa1.22□□□□□ -2.21
SKA3-207ENST00000536239 DEFB123Q8N688 67 aa1.22□□□□□ -2.21
SKA3-207ENST00000536239 DEFB124Q8NES8 71 aa1.22□□□□□ -2.21
SKA3-207ENST00000536239 SPACA4Q8TDM5 124 aa1.22□□□□□ -2.21
SKA3-207ENST00000536239 S4R3F8 94 aa1.22□□□□□ -2.21
SKA3-207ENST00000536239 NBASA2RRP1 2371 aa1.22□□□□□ -2.21
SKA3-207ENST00000536239 LAMA3Q16787 3333 aa1.22□□□□□ -2.21
SKA3-207ENST00000536239 ATMQ13315 3056 aa1.21□□□□□ -2.21
SKA3-207ENST00000536239 CSPG4Q6UVK1 2322 aa1.21□□□□□ -2.22
SKA3-207ENST00000536239 DEFB4AO15263 64 aa1.21□□□□□ -2.22
SKA3-207ENST00000536239 APLNQ9ULZ1 77 aa1.21□□□□□ -2.22
SKA3-207ENST00000536239 CELSR1Q9NYQ6 3014 aa1.21□□□□□ -2.22
SKA3-207ENST00000536239 DCHS2Q6V1P9 2916 aa1.2□□□□□ -2.22
SKA3-207ENST00000536239 ANKHD1Q8IWZ3 2542 aaKnown RBP1.2□□□□□ -2.22
SKA3-207ENST00000536239 APCP25054 2843 aa1.2□□□□□ -2.22
SKA3-207ENST00000536239 SPTAN1Q13813 2472 aaKnown RBP1.2□□□□□ -2.22
SKA3-207ENST00000536239 CREBBPQ92793 2442 aa1.2□□□□□ -2.22
SKA3-207ENST00000536239 LOC400499M0QZD8 3231 aa1.2□□□□□ -2.22
SKA3-207ENST00000536239 VCANP13611 3396 aa1.19□□□□□ -2.22
SKA3-207ENST00000536239 DMDP11532 3685 aa1.19□□□□□ -2.22
SKA3-207ENST00000536239 OTOGLQ3ZCN5 2332 aa1.19□□□□□ -2.22
SKA3-207ENST00000536239 SPTBN5Q9NRC6 3674 aaKnown RBP1.18□□□□□ -2.22
SKA3-207ENST00000536239 A0A0D9SG42 100 aa1.18□□□□□ -2.22
SKA3-207ENST00000536239 PTPN13Q12923 2485 aa1.18□□□□□ -2.22
SKA3-207ENST00000536239 VWFP04275 2813 aa1.18□□□□□ -2.22
SKA3-207ENST00000536239 NF1P21359 2839 aa1.18□□□□□ -2.22
SKA3-207ENST00000536239 CEP290O15078 2479 aa1.17□□□□□ -2.22
SKA3-207ENST00000536239 BRCA2P51587 3418 aa1.17□□□□□ -2.22
SKA3-207ENST00000536239 TEX15Q9BXT5 2789 aa1.17□□□□□ -2.22
SKA3-207ENST00000536239 CDH23Q9H251 3354 aa1.17□□□□□ -2.22
SKA3-207ENST00000536239 HRNRQ86YZ3 2850 aaPredicted RBP1.17□□□□□ -2.22
SKA3-207ENST00000536239 KRTAP12-1P59990 96 aa1.17□□□□□ -2.22
SKA3-207ENST00000536239 KRTAP13-4Q3LI77 160 aa1.17□□□□□ -2.22
SKA3-207ENST00000536239 CSMD1Q96PZ7 3565 aa1.17□□□□□ -2.22
SKA3-207ENST00000536239 CELSR3Q9NYQ7 3312 aa1.17□□□□□ -2.22
SKA3-207ENST00000536239 CRYBG3Q68DQ2 2970 aa1.17□□□□□ -2.22
SKA3-207ENST00000536239 WDFY3Q8IZQ1 3526 aa1.16□□□□□ -2.22
SKA3-207ENST00000536239 MUC6Q6W4X9 2439 aa1.16□□□□□ -2.22
SKA3-207ENST00000536239 TLN1Q9Y490 2541 aaKnown RBP1.16□□□□□ -2.22
SKA3-207ENST00000536239 M0QZ58 72 aa1.16□□□□□ -2.22
SKA3-207ENST00000536239 FBN3Q75N90 2809 aa1.16□□□□□ -2.22
SKA3-207ENST00000536239 F8P00451 2351 aa1.16□□□□□ -2.22
SKA3-207ENST00000536239 CCDC168Q8NDH2 2452 aa1.16□□□□□ -2.22
SKA3-207ENST00000536239 COL6A5A8TX70 2615 aa1.16□□□□□ -2.22
SKA3-207ENST00000536239 FN1P02751 2386 aaKnown RBP1.15□□□□□ -2.22
SKA3-207ENST00000536239 RIF1Q5UIP0 2472 aaKnown RBP1.15□□□□□ -2.22
SKA3-207ENST00000536239 SRRM2Q9UQ35 2752 aaKnown RBP1.15□□□□□ -2.22
SKA3-207ENST00000536239 MEGF8Q7Z7M0 2845 aa1.15□□□□□ -2.23
SKA3-207ENST00000536239 TLN2Q9Y4G6 2542 aa1.15□□□□□ -2.23
SKA3-207ENST00000536239 HIVEP3Q5T1R4 2406 aa1.15□□□□□ -2.23
SKA3-207ENST00000536239 ADGRG4Q8IZF6 3080 aa1.14□□□□□ -2.23
SKA3-207ENST00000536239 SETXQ7Z333 2677 aaKnown RBP1.14□□□□□ -2.23
SKA3-207ENST00000536239 NAV2Q8IVL1 2488 aa1.14□□□□□ -2.23
SKA3-207ENST00000536239 SONP18583 2426 aaKnown RBP1.14□□□□□ -2.23
SKA3-207ENST00000536239 ZNF462Q96JM2 2506 aa1.14□□□□□ -2.23
SKA3-207ENST00000536239 FAM208BQ5VWN6 2430 aa1.14□□□□□ -2.23
SKA3-207ENST00000536239 ZFHX4Q86UP3 3567 aa1.13□□□□□ -2.23
SKA3-207ENST00000536239 UTP20O75691 2785 aaKnown RBP1.13□□□□□ -2.23
SKA3-207ENST00000536239 KRTAP12-3P60328 96 aa1.13□□□□□ -2.23
SKA3-207ENST00000536239 USP9XQ93008 2570 aaPredicted RBP1.12□□□□□ -2.23
SKA3-207ENST00000536239 RPS29P62273 56 aaKnown RBP1.12□□□□□ -2.23
SKA3-207ENST00000536239 DOPEY1Q5JWR5 2465 aa1.12□□□□□ -2.23
SKA3-207ENST00000536239 JMJD1CQ15652 2540 aa1.11□□□□□ -2.23
SKA3-207ENST00000536239 CENPEQ02224 2701 aa1.11□□□□□ -2.23
SKA3-207ENST00000536239 Q5VSD8 79 aa1.1□□□□□ -2.23
SKA3-207ENST00000536239 SPENQ96T58 3664 aaKnown RBP1.1□□□□□ -2.23
SKA3-207ENST00000536239 TENM4Q6N022 2769 aa1.1□□□□□ -2.23
SKA3-207ENST00000536239 NBEAL2Q6ZNJ1 2754 aa1.1□□□□□ -2.23
SKA3-207ENST00000536239 CEP295Q9C0D2 2601 aa1.1□□□□□ -2.23
SKA3-207ENST00000536239 EYSQ5T1H1 3165 aa1.1□□□□□ -2.23
SKA3-207ENST00000536239 GCN1Q92616 2671 aaKnown RBP1.1□□□□□ -2.23
SKA3-207ENST00000536239 ZFYVE26Q68DK2 2539 aa1.1□□□□□ -2.23
SKA3-207ENST00000536239 KRTAP13-2Q52LG2 175 aa1.09□□□□□ -2.23
SKA3-207ENST00000536239 NIPBLQ6KC79 2804 aaeCLIP1.09□□□□□ -2.24
SKA3-207ENST00000536239 MTORP42345 2549 aa1.09□□□□□ -2.24
SKA3-207ENST00000536239 BAHCC1Q9P281 2608 aa1.08□□□□□ -2.24
SKA3-207ENST00000536239 SMG1Q96Q15 3661 aaKnown RBP1.08□□□□□ -2.24
SKA3-207ENST00000536239 MYO9AB2RTY4 2548 aa1.08□□□□□ -2.24
SKA3-207ENST00000536239 LAMA5O15230 3695 aa1.08□□□□□ -2.24
SKA3-207ENST00000536239 PDZD2O15018 2839 aa1.08□□□□□ -2.24
SKA3-207ENST00000536239 MXRA5Q9NR99 2828 aa1.08□□□□□ -2.24
SKA3-207ENST00000536239 RELNP78509 3460 aa1.08□□□□□ -2.24
SKA3-207ENST00000536239 CHD8Q9HCK8 2581 aa1.07□□□□□ -2.24
SKA3-207ENST00000536239 HELZ2Q9BYK8 2649 aaKnown RBP1.07□□□□□ -2.24
SKA3-207ENST00000536239 UNC79Q9P2D8 2635 aa1.07□□□□□ -2.24
SKA3-207ENST00000536239 HECTD1Q9ULT8 2610 aa1.07□□□□□ -2.24
SKA3-207ENST00000536239 DMBT1Q9UGM3 2413 aaPredicted RBP1.07□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms