RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 C1orf195Q5TG92 126 aa9.45□□□□□ -0.9
CHMP1A-202ENST00000535997 SSBP3-AS1Q7Z2R9 100 aa9.45□□□□□ -0.9
CHMP1A-202ENST00000535997 PCOTHQ58A44 107 aa9.44□□□□□ -0.9
CHMP1A-202ENST00000535997 LY6G6CO95867 125 aa9.44□□□□□ -0.9
CHMP1A-202ENST00000535997 Q8N9P0 234 aaPredicted RBP9.43□□□□□ -0.9
CHMP1A-202ENST00000535997 CIRBP-AS1Q8TBR5 109 aa9.43□□□□□ -0.9
CHMP1A-202ENST00000535997 LIMD2Q9BT23 127 aa9.43□□□□□ -0.9
CHMP1A-202ENST00000535997 COA5Q86WW8 74 aa9.42□□□□□ -0.9
CHMP1A-202ENST00000535997 DNAH11Q96DT5 4516 aa9.41□□□□□ -0.9
CHMP1A-202ENST00000535997 A8MUN3 132 aa9.4□□□□□ -0.9
CHMP1A-202ENST00000535997 SPINK6Q6UWN8 80 aa9.4□□□□□ -0.9
CHMP1A-202ENST00000535997 DNAH5Q8TE73 4624 aa9.4□□□□□ -0.91
CHMP1A-202ENST00000535997 DNAH6Q9C0G6 4158 aa9.4□□□□□ -0.91
CHMP1A-202ENST00000535997 ALMS1Q8TCU4 4167 aa9.39□□□□□ -0.91
CHMP1A-202ENST00000535997 DNHD1Q96M86 4753 aa9.38□□□□□ -0.91
CHMP1A-202ENST00000535997 Q5VV11 94 aa9.36□□□□□ -0.91
CHMP1A-202ENST00000535997 KRTAP10-2P60368 255 aa9.36□□□□□ -0.91
CHMP1A-202ENST00000535997 LOC101927531A0A1B0GV80 90 aa9.35□□□□□ -0.91
CHMP1A-202ENST00000535997 C8orf87E5RJ46 101 aa9.34□□□□□ -0.91
CHMP1A-202ENST00000535997 KRTAP13-3Q3SY46 172 aa9.33□□□□□ -0.92
CHMP1A-202ENST00000535997 Q5W150 140 aa9.33□□□□□ -0.92
CHMP1A-202ENST00000535997 Q6ZSA8 131 aa9.3□□□□□ -0.92
CHMP1A-202ENST00000535997 PRR15LQ9BU68 103 aa9.3□□□□□ -0.92
CHMP1A-202ENST00000535997 CHKB-CPT1BH3BT56 60 aa9.28□□□□□ -0.92
CHMP1A-202ENST00000535997 HRES1P13985 223 aa9.28□□□□□ -0.92
CHMP1A-202ENST00000535997 LINC00313P59037 77 aa9.28□□□□□ -0.92
CHMP1A-202ENST00000535997 LRP1BQ9NZR2 4599 aa9.27□□□□□ -0.93
CHMP1A-202ENST00000535997 KRTAP21-3Q3LHN1 58 aa9.27□□□□□ -0.93
CHMP1A-202ENST00000535997 KRTAP13-2Q52LG2 175 aa9.26□□□□□ -0.93
CHMP1A-202ENST00000535997 KRTAP10-1P60331 282 aa9.25□□□□□ -0.93
CHMP1A-202ENST00000535997 Q75L30 129 aa9.25□□□□□ -0.93
CHMP1A-202ENST00000535997 PKD1P98161 4303 aa9.25□□□□□ -0.93
CHMP1A-202ENST00000535997 LINC01558Q9Y6Z2 57 aa9.24□□□□□ -0.93
CHMP1A-202ENST00000535997 SPAG11AQ6PDA7 123 aa9.23□□□□□ -0.93
CHMP1A-202ENST00000535997 FAM229AH3BQW9 127 aa9.21□□□□□ -0.93
CHMP1A-202ENST00000535997 PMAIP1Q13794 54 aa9.21□□□□□ -0.93
CHMP1A-202ENST00000535997 FAT2Q9NYQ8 4349 aa9.2□□□□□ -0.94
CHMP1A-202ENST00000535997 HYDINQ4G0P3 5121 aa9.19□□□□□ -0.94
CHMP1A-202ENST00000535997 KRTAP1-4P0C5Y4 121 aa9.18□□□□□ -0.94
CHMP1A-202ENST00000535997 ACYP2P14621 99 aa9.18□□□□□ -0.94
CHMP1A-202ENST00000535997 SEC61GP60059 68 aa9.16□□□□□ -0.94
CHMP1A-202ENST00000535997 VPS13BQ7Z7G8 4022 aa9.16□□□□□ -0.94
CHMP1A-202ENST00000535997 A6NED7 52 aa9.16□□□□□ -0.94
CHMP1A-202ENST00000535997 A8MU10 97 aa9.16□□□□□ -0.94
CHMP1A-202ENST00000535997 KRTAP16-1A8MUX0 517 aa9.13□□□□□ -0.95
CHMP1A-202ENST00000535997 LCA10Q71F78 164 aa9.12□□□□□ -0.95
CHMP1A-202ENST00000535997 DMAC1Q96GE9 116 aa9.12□□□□□ -0.95
CHMP1A-202ENST00000535997 PLA2G1BP04054 148 aaKnown RBP9.11□□□□□ -0.95
CHMP1A-202ENST00000535997 IGKV2-30P06310 120 aa9.11□□□□□ -0.95
CHMP1A-202ENST00000535997 PRR26Q8N8Z3 221 aa9.11□□□□□ -0.95
CHMP1A-202ENST00000535997 C4orf48Q5BLP8 95 aa9.11□□□□□ -0.95
CHMP1A-202ENST00000535997 ATP11AUNQ6ZP68 121 aa9.09□□□□□ -0.95
CHMP1A-202ENST00000535997 RETNLBQ9BQ08 111 aa9.08□□□□□ -0.96
CHMP1A-202ENST00000535997 SPINK1P00995 79 aa9.08□□□□□ -0.96
CHMP1A-202ENST00000535997 CDC42SE1Q9NRR8 79 aa9.08□□□□□ -0.96
CHMP1A-202ENST00000535997 TYMSOSQ8TAI1 123 aa9.07□□□□□ -0.96
CHMP1A-202ENST00000535997 SPTSSBQ8NFR3 76 aa9.02□□□□□ -0.96
CHMP1A-202ENST00000535997 SPINK7P58062 85 aa9.01□□□□□ -0.97
CHMP1A-202ENST00000535997 RPS29P62273 56 aaKnown RBP8.97□□□□□ -0.97
CHMP1A-202ENST00000535997 IGKV2D-30A0A075B6S6 120 aa8.97□□□□□ -0.97
CHMP1A-202ENST00000535997 KTN1-AS1Q86SY8 53 aa8.95□□□□□ -0.98
CHMP1A-202ENST00000535997 PKHD1P08F94 4074 aa8.94□□□□□ -0.98
CHMP1A-202ENST00000535997 LINC00304Q8N9R0 145 aa8.94□□□□□ -0.98
CHMP1A-202ENST00000535997 SACSQ9NZJ4 4579 aa8.91□□□□□ -0.98
CHMP1A-202ENST00000535997 A0A1B0GU69 56 aa8.9□□□□□ -0.98
CHMP1A-202ENST00000535997 A6NN06 94 aa8.9□□□□□ -0.98
CHMP1A-202ENST00000535997 C7orf65Q6ZTY9 151 aa8.88□□□□□ -0.99
CHMP1A-202ENST00000535997 DYNC1H1Q14204 4646 aaKnown RBP8.86□□□□□ -0.99
CHMP1A-202ENST00000535997 SMR3BP02814 79 aaPredicted RBP8.82□□□□□ -1
CHMP1A-202ENST00000535997 RBM12B-AS1Q9P1G2 102 aa8.78□□□□□ -1
CHMP1A-202ENST00000535997 SPATA8Q6RVD6 105 aa8.78□□□□□ -1
CHMP1A-202ENST00000535997 FAT1Q14517 4588 aa8.78□□□□□ -1
CHMP1A-202ENST00000535997 A0A1B0GVY2 172 aa8.76□□□□□ -1.01
CHMP1A-202ENST00000535997 UQCR11O14957 56 aa8.76□□□□□ -1.01
CHMP1A-202ENST00000535997 C20orf166-AS1Q96NR2 134 aa8.76□□□□□ -1.01
CHMP1A-202ENST00000535997 APOBP04114 4563 aaKnown RBP8.75□□□□□ -1.01
CHMP1A-202ENST00000535997 A8MUU9 505 aa8.75□□□□□ -1.01
CHMP1A-202ENST00000535997 KRTAP10-4P60372 401 aaPredicted RBP8.75□□□□□ -1.01
CHMP1A-202ENST00000535997 PKHD1L1Q86WI1 4243 aa8.75□□□□□ -1.01
CHMP1A-202ENST00000535997 Q8N1X5 172 aa8.74□□□□□ -1.01
CHMP1A-202ENST00000535997 C9orf92A6NGG3 77 aa8.71□□□□□ -1.01
CHMP1A-202ENST00000535997 MIR22HGQ0VDD5 57 aa8.71□□□□□ -1.02
CHMP1A-202ENST00000535997 RYR2Q92736 4967 aa8.59□□□□□ -1.03
CHMP1A-202ENST00000535997 KRTAP3-1Q9BYR8 98 aa8.59□□□□□ -1.03
CHMP1A-202ENST00000535997 FLG2Q5D862 2391 aaPredicted RBP8.55□□□□□ -1.04
CHMP1A-202ENST00000535997 KMT2CQ8NEZ4 4911 aaKnown RBP8.5□□□□□ -1.05
CHMP1A-202ENST00000535997 FAT3Q8TDW7 4589 aa8.49□□□□□ -1.05
CHMP1A-202ENST00000535997 COX6B2Q6YFQ2 88 aa8.48□□□□□ -1.05
CHMP1A-202ENST00000535997 KRTAP10-8P60410 259 aa8.45□□□□□ -1.06
CHMP1A-202ENST00000535997 PRAC1Q96KF2 57 aa8.45□□□□□ -1.06
CHMP1A-202ENST00000535997 TNXBP22105 4242 aa8.45□□□□□ -1.06
CHMP1A-202ENST00000535997 LRP1Q07954 4544 aaKnown RBP8.43□□□□□ -1.06
CHMP1A-202ENST00000535997 A0A1B0GU33 70 aa8.43□□□□□ -1.06
CHMP1A-202ENST00000535997 ADM2Q7Z4H4 148 aa8.42□□□□□ -1.06
CHMP1A-202ENST00000535997 H0YAA0 97 aa8.41□□□□□ -1.06
CHMP1A-202ENST00000535997 H1FX-AS1Q4G0G2 97 aa8.38□□□□□ -1.07
CHMP1A-202ENST00000535997 Q5VSD8 79 aa8.36□□□□□ -1.07
CHMP1A-202ENST00000535997 HSPG2P98160 4391 aa8.34□□□□□ -1.07
CHMP1A-202ENST00000535997 RPL37P61927 97 aaKnown RBP8.33□□□□□ -1.08
CHMP1A-202ENST00000535997 DMBT1Q9UGM3 2413 aaPredicted RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms