RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 LINC00846Q9NV44 126 aa1.33□□□□□ -2.2
SYNE1-232ENST00000535081 PSENENQ9NZ42 101 aa1.33□□□□□ -2.2
SYNE1-232ENST00000535081 TMEM14CQ9P0S9 112 aa1.33□□□□□ -2.2
SYNE1-232ENST00000535081 NDUFA12Q9UI09 145 aa1.33□□□□□ -2.2
SYNE1-232ENST00000535081 TRBV20OR9-2A0A075B6H5 130 aa1.32□□□□□ -2.2
SYNE1-232ENST00000535081 LOC107984156A0A0G2JMH3 177 aa1.32□□□□□ -2.2
SYNE1-232ENST00000535081 TRBV27A0A0K0K1C4 114 aa1.32□□□□□ -2.2
SYNE1-232ENST00000535081 M0R378 163 aa1.32□□□□□ -2.2
SYNE1-232ENST00000535081 NDUFC1O43677 76 aa1.32□□□□□ -2.2
SYNE1-232ENST00000535081 BCE1O60756 84 aa1.32□□□□□ -2.2
SYNE1-232ENST00000535081 SH2D1AO60880 128 aa1.32□□□□□ -2.2
SYNE1-232ENST00000535081 LTAP01374 205 aa1.32□□□□□ -2.2
SYNE1-232ENST00000535081 ARL14EPLP0DKL9 152 aa1.32□□□□□ -2.2
SYNE1-232ENST00000535081 HBBP68871 147 aa1.32□□□□□ -2.2
SYNE1-232ENST00000535081 SS18Q15532 418 aa1.32□□□□□ -2.2
SYNE1-232ENST00000535081 MIC13Q5XKP0 118 aa1.32□□□□□ -2.2
SYNE1-232ENST00000535081 PATE2Q6UY27 113 aa1.32□□□□□ -2.2
SYNE1-232ENST00000535081 LCA10Q71F78 164 aa1.32□□□□□ -2.2
SYNE1-232ENST00000535081 PHF5AQ7RTV0 110 aaKnown RBP1.32□□□□□ -2.2
SYNE1-232ENST00000535081 ARL17AQ8IVW1 177 aa1.32□□□□□ -2.2
SYNE1-232ENST00000535081 Q8N8P6 123 aa1.32□□□□□ -2.2
SYNE1-232ENST00000535081 TOMM6Q96B49 74 aa1.32□□□□□ -2.2
SYNE1-232ENST00000535081 IGKV3OR2-268A0A0C4DH90 116 aa1.31□□□□□ -2.2
SYNE1-232ENST00000535081 TEX49A0A1B0GTD5 131 aa1.31□□□□□ -2.2
SYNE1-232ENST00000535081 LINC01549A6NIU2 74 aa1.31□□□□□ -2.2
SYNE1-232ENST00000535081 A8MUN3 132 aa1.31□□□□□ -2.2
SYNE1-232ENST00000535081 H7BZZ5 65 aa1.31□□□□□ -2.2
SYNE1-232ENST00000535081 TMEM256-PLSCR3K7ERE1 68 aa1.31□□□□□ -2.2
SYNE1-232ENST00000535081 CCKP06307 115 aa1.31□□□□□ -2.2
SYNE1-232ENST00000535081 FCER1GP30273 86 aa1.31□□□□□ -2.2
SYNE1-232ENST00000535081 CKS2P33552 79 aa1.31□□□□□ -2.2
SYNE1-232ENST00000535081 IFI27P40305 119 aaPredicted RBP1.31□□□□□ -2.2
SYNE1-232ENST00000535081 RBM3P98179 157 aaKnown RBP1.31□□□□□ -2.2
SYNE1-232ENST00000535081 COX6B2Q6YFQ2 88 aa1.31□□□□□ -2.2
SYNE1-232ENST00000535081 RETNLBQ9BQ08 111 aa1.31□□□□□ -2.2
SYNE1-232ENST00000535081 UBE2D4Q9Y2X8 147 aa1.31□□□□□ -2.2
SYNE1-232ENST00000535081 GVQW2A0A096LPI5 108 aaPredicted RBP1.3□□□□□ -2.2
SYNE1-232ENST00000535081 IGKV2D-26A0A0A0MRZ7 120 aa1.3□□□□□ -2.2
SYNE1-232ENST00000535081 TRAV13-2A0A0B4J235 113 aa1.3□□□□□ -2.2
SYNE1-232ENST00000535081 TRBV6-1A0A0K0K1D8 114 aa1.3□□□□□ -2.2
SYNE1-232ENST00000535081 M0R381 172 aa1.3□□□□□ -2.2
SYNE1-232ENST00000535081 LST1O00453 97 aa1.3□□□□□ -2.2
SYNE1-232ENST00000535081 XCL1P47992 114 aa1.3□□□□□ -2.2
SYNE1-232ENST00000535081 ZNF80P51504 273 aaPredicted RBP1.3□□□□□ -2.2
SYNE1-232ENST00000535081 MP68P56378 58 aa1.3□□□□□ -2.2
SYNE1-232ENST00000535081 KLKP1Q107X0 134 aa1.3□□□□□ -2.2
SYNE1-232ENST00000535081 Q1T7F1 81 aa1.3□□□□□ -2.2
SYNE1-232ENST00000535081 ASB16-AS1Q495Z4 193 aa1.3□□□□□ -2.2
SYNE1-232ENST00000535081 Q6JHZ5 121 aa1.3□□□□□ -2.2
SYNE1-232ENST00000535081 KRTAP5-10Q6L8G5 202 aa1.3□□□□□ -2.2
SYNE1-232ENST00000535081 C2orf82Q6UX34 121 aa1.3□□□□□ -2.2
SYNE1-232ENST00000535081 FAM19A3Q7Z5A8 133 aa1.3□□□□□ -2.2
SYNE1-232ENST00000535081 DAND5Q8N907 189 aa1.3□□□□□ -2.2
SYNE1-232ENST00000535081 PRO1854Q9UHT4 67 aa1.3□□□□□ -2.2
SYNE1-232ENST00000535081 TRAV7A0A075B6U4 112 aa1.29□□□□□ -2.2
SYNE1-232ENST00000535081 TRBV30A0A0K0K1B3 111 aa1.29□□□□□ -2.2
SYNE1-232ENST00000535081 LINC01546A6NGU7 62 aa1.29□□□□□ -2.2
SYNE1-232ENST00000535081 HIGD1CA8MV81 97 aa1.29□□□□□ -2.2
SYNE1-232ENST00000535081 COX7A2LO14548 114 aa1.29□□□□□ -2.2
SYNE1-232ENST00000535081 PLNP26678 52 aa1.29□□□□□ -2.2
SYNE1-232ENST00000535081 RPL28P46779 137 aaKnown RBP1.29□□□□□ -2.2
SYNE1-232ENST00000535081 C9orf116Q5BN46 136 aaPredicted RBP1.29□□□□□ -2.2
SYNE1-232ENST00000535081 ATP5EP2Q5VTU8 51 aa1.29□□□□□ -2.2
SYNE1-232ENST00000535081 C7orf65Q6ZTY9 151 aa1.29□□□□□ -2.2
SYNE1-232ENST00000535081 SMCR5Q8TEV8 140 aa1.29□□□□□ -2.2
SYNE1-232ENST00000535081 TIMM21Q9BVV7 248 aa1.29□□□□□ -2.2
SYNE1-232ENST00000535081 NPCDR1Q9BY65 106 aa1.29□□□□□ -2.2
SYNE1-232ENST00000535081 TMEM167BQ9NRX6 74 aa1.29□□□□□ -2.2
SYNE1-232ENST00000535081 MRPL35Q9NZE8 188 aaKnown RBP1.29□□□□□ -2.2
SYNE1-232ENST00000535081 TRAV12-1A0A0B4J245 112 aa1.28□□□□□ -2.2
SYNE1-232ENST00000535081 K7EMI3 77 aa1.28□□□□□ -2.2
SYNE1-232ENST00000535081 COX6CP09669 75 aa1.28□□□□□ -2.2
SYNE1-232ENST00000535081 ARMS2P0C7Q2 107 aa1.28□□□□□ -2.2
SYNE1-232ENST00000535081 RNASE3P12724 160 aaKnown RBP1.28□□□□□ -2.2
SYNE1-232ENST00000535081 LINC00313P59037 77 aa1.28□□□□□ -2.2
SYNE1-232ENST00000535081 MRPL51Q4U2R6 128 aaKnown RBP1.28□□□□□ -2.2
SYNE1-232ENST00000535081 S100A7L2Q5SY68 101 aa1.28□□□□□ -2.2
SYNE1-232ENST00000535081 SPANXN1Q5VSR9 72 aa1.28□□□□□ -2.2
SYNE1-232ENST00000535081 SPAG11AQ6PDA7 123 aa1.28□□□□□ -2.2
SYNE1-232ENST00000535081 ATP11AUNQ6ZP68 121 aa1.28□□□□□ -2.2
SYNE1-232ENST00000535081 MIR17HGQ75NE6 70 aa1.28□□□□□ -2.2
SYNE1-232ENST00000535081 C20orf197Q8N268 126 aa1.28□□□□□ -2.2
SYNE1-232ENST00000535081 TTTY13Q9BZ97 58 aa1.28□□□□□ -2.2
SYNE1-232ENST00000535081 TRBV10-3A0A0K0K1G6 114 aa1.27□□□□□ -2.21
SYNE1-232ENST00000535081 A6NN06 94 aa1.27□□□□□ -2.21
SYNE1-232ENST00000535081 ZNF815PA8K554 130 aa1.27□□□□□ -2.21
SYNE1-232ENST00000535081 F8WEM9 126 aa1.27□□□□□ -2.21
SYNE1-232ENST00000535081 NDUFA1O15239 70 aa1.27□□□□□ -2.21
SYNE1-232ENST00000535081 ERC2-IT1O76042 136 aa1.27□□□□□ -2.21
SYNE1-232ENST00000535081 MGPP08493 103 aa1.27□□□□□ -2.21
SYNE1-232ENST00000535081 FAM229BQ4G0N7 80 aa1.27□□□□□ -2.21
SYNE1-232ENST00000535081 LINC01554Q52M75 96 aa1.27□□□□□ -2.21
SYNE1-232ENST00000535081 KRTAP26-1Q6PEX3 210 aa1.27□□□□□ -2.21
SYNE1-232ENST00000535081 SFTA2Q6UW10 78 aa1.27□□□□□ -2.21
SYNE1-232ENST00000535081 A0A1B0GUT8 65 aa1.26□□□□□ -2.21
SYNE1-232ENST00000535081 F8VRH5 84 aa1.26□□□□□ -2.21
SYNE1-232ENST00000535081 MT1HP80294 61 aa1.26□□□□□ -2.21
SYNE1-232ENST00000535081 SOSTDC1Q6X4U4 206 aa1.26□□□□□ -2.21
SYNE1-232ENST00000535081 FAM167A-AS1Q96KT0 104 aa1.26□□□□□ -2.21
SYNE1-232ENST00000535081 CYP4F30PQ9H0H9 118 aa1.26□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms