RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 OSTCQ9NRP0 149 aa3.21□□□□□ -1.9
CD44-237ENST00000534082 V9GYV3 84 aa3.21□□□□□ -1.9
CD44-237ENST00000534082 ATOX1O00244 68 aa3.2□□□□□ -1.9
CD44-237ENST00000534082 NCR3O14931 201 aa3.2□□□□□ -1.9
CD44-237ENST00000534082 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.2□□□□□ -1.9
CD44-237ENST00000534082 ORMDL3Q8N138 153 aa3.2□□□□□ -1.9
CD44-237ENST00000534082 hADV29S1A0JD25 119 aa3.19□□□□□ -1.9
CD44-237ENST00000534082 H7C2G1 150 aa3.19□□□□□ -1.9
CD44-237ENST00000534082 KRTAP5-9P26371 169 aa3.19□□□□□ -1.9
CD44-237ENST00000534082 Q6ZRX8 168 aa3.19□□□□□ -1.9
CD44-237ENST00000534082 ZNF625Q96I27 306 aaPredicted RBP3.19□□□□□ -1.9
CD44-237ENST00000534082 TRBV10-3A0A0K0K1G6 114 aa3.18□□□□□ -1.9
CD44-237ENST00000534082 ZNF73O43830 326 aaPredicted RBP3.18□□□□□ -1.9
CD44-237ENST00000534082 C6orf99Q4VX62 202 aa3.18□□□□□ -1.9
CD44-237ENST00000534082 ORMDL2Q53FV1 153 aa3.18□□□□□ -1.9
CD44-237ENST00000534082 ST20-AS1Q8NBB2 130 aa3.18□□□□□ -1.9
CD44-237ENST00000534082 SMIM7Q9BQ49 75 aa3.18□□□□□ -1.9
CD44-237ENST00000534082 HIST1H4AP62805 103 aaKnown RBP3.17□□□□□ -1.9
CD44-237ENST00000534082 SMIM29Q86T20 159 aa3.17□□□□□ -1.9
CD44-237ENST00000534082 Q8N8P6 123 aa3.17□□□□□ -1.9
CD44-237ENST00000534082 HIGD1BQ9P298 99 aa3.17□□□□□ -1.9
CD44-237ENST00000534082 SMIM27A0A1W2PRY6 76 aa3.16□□□□□ -1.9
CD44-237ENST00000534082 A8MUN3 132 aa3.16□□□□□ -1.9
CD44-237ENST00000534082 LST1O00453 97 aa3.16□□□□□ -1.9
CD44-237ENST00000534082 SCGB1C2P0DMR2 95 aa3.16□□□□□ -1.9
CD44-237ENST00000534082 LINC00158P58513 81 aa3.16□□□□□ -1.9
CD44-237ENST00000534082 RPL23P62829 140 aaKnown RBP3.16□□□□□ -1.9
CD44-237ENST00000534082 LCE1EQ5T753 118 aa3.16□□□□□ -1.9
CD44-237ENST00000534082 Q6ZVQ6 151 aa3.16□□□□□ -1.9
CD44-237ENST00000534082 LCA10Q71F78 164 aa3.16□□□□□ -1.9
CD44-237ENST00000534082 K7EMI3 77 aa3.15□□□□□ -1.91
CD44-237ENST00000534082 MT3P25713 68 aa3.15□□□□□ -1.91
CD44-237ENST00000534082 Q1RN00 199 aa3.15□□□□□ -1.91
CD44-237ENST00000534082 SERP2Q8N6R1 65 aa3.15□□□□□ -1.91
CD44-237ENST00000534082 TOMM6Q96B49 74 aa3.15□□□□□ -1.91
CD44-237ENST00000534082 TMEM256-PLSCR3K7ERE1 68 aa3.14□□□□□ -1.91
CD44-237ENST00000534082 MP68P56378 58 aa3.14□□□□□ -1.91
CD44-237ENST00000534082 ATP5EP56381 51 aaPredicted RBP3.14□□□□□ -1.91
CD44-237ENST00000534082 SFTA2Q6UW10 78 aa3.14□□□□□ -1.91
CD44-237ENST00000534082 OBSCN-AS1Q96MR7 158 aa3.14□□□□□ -1.91
CD44-237ENST00000534082 NXT2Q9NPJ8 142 aaKnown RBP3.14□□□□□ -1.91
CD44-237ENST00000534082 ACYP1P07311 99 aa3.13□□□□□ -1.91
CD44-237ENST00000534082 SPRR1BP22528 89 aa3.13□□□□□ -1.91
CD44-237ENST00000534082 PSMB2P49721 201 aa3.13□□□□□ -1.91
CD44-237ENST00000534082 LINC00313P59037 77 aa3.13□□□□□ -1.91
CD44-237ENST00000534082 TMEM170BQ5T4T1 132 aa3.13□□□□□ -1.91
CD44-237ENST00000534082 URB1-AS1Q96HZ7 61 aa3.13□□□□□ -1.91
CD44-237ENST00000534082 SCGB3A1Q96QR1 104 aa3.13□□□□□ -1.91
CD44-237ENST00000534082 CYSTM1Q9H1C7 97 aa3.13□□□□□ -1.91
CD44-237ENST00000534082 K7ERJ3 54 aa3.12□□□□□ -1.91
CD44-237ENST00000534082 TIMM17BO60830 172 aa3.12□□□□□ -1.91
CD44-237ENST00000534082 HBDP02042 147 aa3.12□□□□□ -1.91
CD44-237ENST00000534082 HERVK_113P61574 105 aa3.12□□□□□ -1.91
CD44-237ENST00000534082 KRTAP2-1Q9BYU5 128 aa3.12□□□□□ -1.91
CD44-237ENST00000534082 A6NN06 94 aa3.11□□□□□ -1.91
CD44-237ENST00000534082 ZNF22P17026 224 aaPredicted RBP3.11□□□□□ -1.91
CD44-237ENST00000534082 FXYD2P54710 66 aa3.11□□□□□ -1.91
CD44-237ENST00000534082 NOTCH2NLQ7Z3S9 236 aa3.11□□□□□ -1.91
CD44-237ENST00000534082 LINC00643Q86TS7 51 aa3.11□□□□□ -1.91
CD44-237ENST00000534082 MIR7-3HGQ8N6C7 128 aa3.11□□□□□ -1.91
CD44-237ENST00000534082 A0A0G2JQZ4 141 aa3.1□□□□□ -1.91
CD44-237ENST00000534082 PSPHP1O15172 72 aa3.1□□□□□ -1.91
CD44-237ENST00000534082 NHP2Q9NX24 153 aaKnown RBP3.1□□□□□ -1.91
CD44-237ENST00000534082 TRAV23DV6A0A075B6W5 121 aa3.09□□□□□ -1.91
CD44-237ENST00000534082 LOC107984156A0A0G2JMH3 177 aa3.09□□□□□ -1.91
CD44-237ENST00000534082 CCKP06307 115 aa3.09□□□□□ -1.91
CD44-237ENST00000534082 C7orf65Q6ZTY9 151 aa3.09□□□□□ -1.91
CD44-237ENST00000534082 ARL17AQ8IVW1 177 aa3.09□□□□□ -1.91
CD44-237ENST00000534082 CHCHD1Q96BP2 118 aaKnown RBP3.09□□□□□ -1.91
CD44-237ENST00000534082 IGHV6-1A0A0B4J1U7 121 aa3.08□□□□□ -1.92
CD44-237ENST00000534082 TRBV10-2A0A0K0K1G8 114 aa3.08□□□□□ -1.92
CD44-237ENST00000534082 MYMXA0A1B0GTQ4 84 aa3.08□□□□□ -1.92
CD44-237ENST00000534082 CXCL6P80162 114 aa3.08□□□□□ -1.92
CD44-237ENST00000534082 LINC01549A6NIU2 74 aa3.07□□□□□ -1.92
CD44-237ENST00000534082 LEPROTL1O95214 131 aa3.07□□□□□ -1.92
CD44-237ENST00000534082 SPRR2EP22531 72 aa3.07□□□□□ -1.92
CD44-237ENST00000534082 SPRR2BP35325 72 aa3.07□□□□□ -1.92
CD44-237ENST00000534082 SPRR2AP35326 72 aa3.07□□□□□ -1.92
CD44-237ENST00000534082 S100A7L2Q5SY68 101 aa3.07□□□□□ -1.92
CD44-237ENST00000534082 Q96NJ1 140 aa3.07□□□□□ -1.92
CD44-237ENST00000534082 A8MWP4 228 aa3.06□□□□□ -1.92
CD44-237ENST00000534082 HRES1P13985 223 aa3.06□□□□□ -1.92
CD44-237ENST00000534082 LINC01554Q52M75 96 aa3.06□□□□□ -1.92
CD44-237ENST00000534082 IGFL1Q6UW32 110 aa3.06□□□□□ -1.92
CD44-237ENST00000534082 C11orf86A6NJI1 115 aa3.05□□□□□ -1.92
CD44-237ENST00000534082 A8MUU9 505 aa3.05□□□□□ -1.92
CD44-237ENST00000534082 H7BZZ5 65 aa3.05□□□□□ -1.92
CD44-237ENST00000534082 NDUFC1O43677 76 aa3.05□□□□□ -1.92
CD44-237ENST00000534082 RBM3P98179 157 aaKnown RBP3.05□□□□□ -1.92
CD44-237ENST00000534082 Q1T7F1 81 aa3.05□□□□□ -1.92
CD44-237ENST00000534082 IFI27L1Q96BM0 104 aa3.05□□□□□ -1.92
CD44-237ENST00000534082 DEFB105AQ8NG35 78 aa3.04□□□□□ -1.92
CD44-237ENST00000534082 DHRS4-AS1Q9P1J3 65 aa3.04□□□□□ -1.92
CD44-237ENST00000534082 TRAV13-2A0A0B4J235 113 aa3.03□□□□□ -1.92
CD44-237ENST00000534082 A0A0B4J2C4 111 aa3.03□□□□□ -1.92
CD44-237ENST00000534082 TEX49A0A1B0GTD5 131 aa3.03□□□□□ -1.92
CD44-237ENST00000534082 KLKP1Q107X0 134 aa3.03□□□□□ -1.92
CD44-237ENST00000534082 FAM218AQ96MZ4 157 aa3.03□□□□□ -1.92
CD44-237ENST00000534082 KRTAP16-1A8MUX0 517 aa3.02□□□□□ -1.93
CD44-237ENST00000534082 LINC01546A6NGU7 62 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms