RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 LIMD2Q9BT23 127 aa8.48□□□□□ -1.05
CPSF1-208ENST00000532560 SS18L2Q9UHA2 77 aa8.48□□□□□ -1.05
CPSF1-208ENST00000532560 F8WEM9 126 aa8.47□□□□□ -1.05
CPSF1-208ENST00000532560 A0A087WVE0 104 aa8.46□□□□□ -1.06
CPSF1-208ENST00000532560 HRCT1Q6UXD1 115 aa8.46□□□□□ -1.06
CPSF1-208ENST00000532560 IGLV8-61A0A075B6I0 122 aa8.44□□□□□ -1.06
CPSF1-208ENST00000532560 KRTAP13-3Q3SY46 172 aa8.43□□□□□ -1.06
CPSF1-208ENST00000532560 Q5XG85 94 aa8.43□□□□□ -1.06
CPSF1-208ENST00000532560 A0A0G2JQZ4 141 aa8.42□□□□□ -1.06
CPSF1-208ENST00000532560 TRAV7A0A075B6U4 112 aa8.41□□□□□ -1.06
CPSF1-208ENST00000532560 TMEM258P61165 79 aa8.4□□□□□ -1.06
CPSF1-208ENST00000532560 NREPQ16612 68 aa8.4□□□□□ -1.06
CPSF1-208ENST00000532560 IGFL1Q6UW32 110 aa8.38□□□□□ -1.07
CPSF1-208ENST00000532560 RPS28P62857 69 aaKnown RBP8.35□□□□□ -1.07
CPSF1-208ENST00000532560 BPY2O14599 106 aa8.34□□□□□ -1.07
CPSF1-208ENST00000532560 C1orf195Q5TG92 126 aa8.32□□□□□ -1.08
CPSF1-208ENST00000532560 J3KT08 172 aa8.3□□□□□ -1.08
CPSF1-208ENST00000532560 NDUFC1O43677 76 aa8.3□□□□□ -1.08
CPSF1-208ENST00000532560 KLKP1Q107X0 134 aa8.3□□□□□ -1.08
CPSF1-208ENST00000532560 ASB16-AS1Q495Z4 193 aa8.3□□□□□ -1.08
CPSF1-208ENST00000532560 A0A1W2PNM2 257 aa8.29□□□□□ -1.08
CPSF1-208ENST00000532560 IGKV4-1P06312 121 aa8.29□□□□□ -1.08
CPSF1-208ENST00000532560 XP32Q5T750 250 aa8.28□□□□□ -1.08
CPSF1-208ENST00000532560 MUC17Q685J3 4493 aa8.28□□□□□ -1.08
CPSF1-208ENST00000532560 C20orf197Q8N268 126 aa8.26□□□□□ -1.09
CPSF1-208ENST00000532560 MUC2Q02817 5179 aa8.24□□□□□ -1.09
CPSF1-208ENST00000532560 SEC61BP60468 96 aaKnown RBP8.24□□□□□ -1.09
CPSF1-208ENST00000532560 C9orf92A6NGG3 77 aa8.23□□□□□ -1.09
CPSF1-208ENST00000532560 ATP5EP56381 51 aaPredicted RBP8.23□□□□□ -1.09
CPSF1-208ENST00000532560 CYSTM1Q9H1C7 97 aa8.21□□□□□ -1.1
CPSF1-208ENST00000532560 A0A0U1RQV1 116 aa8.2□□□□□ -1.1
CPSF1-208ENST00000532560 OCR1Q9BZK8 76 aa8.2□□□□□ -1.1
CPSF1-208ENST00000532560 A0A087WSZ3 146 aa8.19□□□□□ -1.1
CPSF1-208ENST00000532560 FAM236DA0A1B0GTK5 79 aa8.19□□□□□ -1.1
CPSF1-208ENST00000532560 FAM236CP0DP71 79 aa8.19□□□□□ -1.1
CPSF1-208ENST00000532560 H7BZZ5 65 aa8.18□□□□□ -1.1
CPSF1-208ENST00000532560 Q8N9L7 120 aa8.16□□□□□ -1.1
CPSF1-208ENST00000532560 TMEM254Q8TBM7 123 aa8.16□□□□□ -1.1
CPSF1-208ENST00000532560 DSCR10P59022 87 aa8.15□□□□□ -1.1
CPSF1-208ENST00000532560 SERP1Q9Y6X1 66 aa8.14□□□□□ -1.11
CPSF1-208ENST00000532560 Q96NJ1 140 aa8.13□□□□□ -1.11
CPSF1-208ENST00000532560 KRTAP4-1Q9BYQ7 146 aa8.12□□□□□ -1.11
CPSF1-208ENST00000532560 HCG22E2RYF7 251 aa8.11□□□□□ -1.11
CPSF1-208ENST00000532560 KRTAP9-2Q9BYQ4 174 aa8.11□□□□□ -1.11
CPSF1-208ENST00000532560 RPL37P61927 97 aaKnown RBP8.1□□□□□ -1.11
CPSF1-208ENST00000532560 SNURFQ9Y675 71 aa8.1□□□□□ -1.11
CPSF1-208ENST00000532560 K7EQZ3 153 aa8.09□□□□□ -1.11
CPSF1-208ENST00000532560 C5orf47Q569G3 176 aa8.09□□□□□ -1.11
CPSF1-208ENST00000532560 PCOTHQ58A44 107 aa8.09□□□□□ -1.11
CPSF1-208ENST00000532560 SVIPQ8NHG7 77 aa8.08□□□□□ -1.12
CPSF1-208ENST00000532560 FAT4Q6V0I7 4981 aa8.04□□□□□ -1.12
CPSF1-208ENST00000532560 A8MWP4 228 aa8.04□□□□□ -1.12
CPSF1-208ENST00000532560 LINC00472Q9H8W2 130 aa8.04□□□□□ -1.12
CPSF1-208ENST00000532560 Q75L30 129 aa8.03□□□□□ -1.12
CPSF1-208ENST00000532560 PRR15Q8IV56 129 aa8.03□□□□□ -1.12
CPSF1-208ENST00000532560 H3BPC8 53 aa8.02□□□□□ -1.13
CPSF1-208ENST00000532560 NDUFB1O75438 58 aa8.01□□□□□ -1.13
CPSF1-208ENST00000532560 SMIM26A0A096LP01 95 aa8□□□□□ -1.13
CPSF1-208ENST00000532560 LCE2AQ5TA79 106 aaPredicted RBP8□□□□□ -1.13
CPSF1-208ENST00000532560 ZCCHC13Q8WW36 166 aaKnown RBP8□□□□□ -1.13
CPSF1-208ENST00000532560 MP68P56378 58 aa7.99□□□□□ -1.13
CPSF1-208ENST00000532560 CASC2Q6XLA1 102 aa7.97□□□□□ -1.13
CPSF1-208ENST00000532560 C20orf166-AS1Q96NR2 134 aa7.97□□□□□ -1.13
CPSF1-208ENST00000532560 KRTAP9-6A0A140TA67 174 aa7.96□□□□□ -1.14
CPSF1-208ENST00000532560 DEFB116Q30KQ4 102 aa7.96□□□□□ -1.14
CPSF1-208ENST00000532560 A8MUU9 505 aa7.95□□□□□ -1.14
CPSF1-208ENST00000532560 ATP11AUNQ6ZP68 121 aa7.95□□□□□ -1.14
CPSF1-208ENST00000532560 LINC00313P59037 77 aa7.94□□□□□ -1.14
CPSF1-208ENST00000532560 WFDC13Q8IUB5 93 aa7.93□□□□□ -1.14
CPSF1-208ENST00000532560 hDV103S1A0JD37 113 aa7.92□□□□□ -1.14
CPSF1-208ENST00000532560 KRTAP19-2Q3LHN2 52 aa7.92□□□□□ -1.14
CPSF1-208ENST00000532560 TP53AIP1Q9HCN2 124 aa7.92□□□□□ -1.14
CPSF1-208ENST00000532560 IGHV6-1A0A0B4J1U7 121 aa7.91□□□□□ -1.14
CPSF1-208ENST00000532560 KRTAP16-1A8MUX0 517 aa7.91□□□□□ -1.14
CPSF1-208ENST00000532560 A0A1B0GVX0 72 aa7.9□□□□□ -1.14
CPSF1-208ENST00000532560 CYP4F30PQ9H0H9 118 aa7.9□□□□□ -1.14
CPSF1-208ENST00000532560 MMP24-AS1A0A0U1RRL7 71 aa7.89□□□□□ -1.15
CPSF1-208ENST00000532560 C8orf87E5RJ46 101 aa7.89□□□□□ -1.15
CPSF1-208ENST00000532560 NOTCH2NLQ7Z3S9 236 aa7.89□□□□□ -1.15
CPSF1-208ENST00000532560 LCE2CQ5TA81 110 aa7.88□□□□□ -1.15
CPSF1-208ENST00000532560 SPANXA2-OT1Q8N9U9 137 aa7.88□□□□□ -1.15
CPSF1-208ENST00000532560 TRAV22A0A0B4J277 110 aa7.87□□□□□ -1.15
CPSF1-208ENST00000532560 H0Y9P7 68 aa7.86□□□□□ -1.15
CPSF1-208ENST00000532560 C8orf17Q9NRJ1 99 aa7.84□□□□□ -1.15
CPSF1-208ENST00000532560 LINC00208Q96KT6 92 aa7.83□□□□□ -1.16
CPSF1-208ENST00000532560 C4orf26Q17RF5 130 aa7.81□□□□□ -1.16
CPSF1-208ENST00000532560 C1orf64Q8NEQ6 169 aa7.79□□□□□ -1.16
CPSF1-208ENST00000532560 MT1HP80294 61 aa7.78□□□□□ -1.16
CPSF1-208ENST00000532560 COX6B2Q6YFQ2 88 aa7.77□□□□□ -1.17
CPSF1-208ENST00000532560 MRPL34Q9BQ48 92 aaKnown RBP7.77□□□□□ -1.17
CPSF1-208ENST00000532560 Q8N9P0 234 aaPredicted RBP7.74□□□□□ -1.17
CPSF1-208ENST00000532560 V9GYY9 64 aa7.74□□□□□ -1.17
CPSF1-208ENST00000532560 Q1T7F1 81 aa7.73□□□□□ -1.17
CPSF1-208ENST00000532560 LOC101927531A0A1B0GV80 90 aa7.68□□□□□ -1.18
CPSF1-208ENST00000532560 NDUFS5O43920 106 aa7.68□□□□□ -1.18
CPSF1-208ENST00000532560 FLGP20930 4061 aaPredicted RBP7.66□□□□□ -1.18
CPSF1-208ENST00000532560 MPLKIPQ8TAP9 179 aa7.65□□□□□ -1.18
CPSF1-208ENST00000532560 HRES1P13985 223 aa7.64□□□□□ -1.19
CPSF1-208ENST00000532560 PRO0628Q9UI54 55 aa7.64□□□□□ -1.19
CPSF1-208ENST00000532560 FSIP2Q5CZC0 6907 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 162.7 ms