RNA–Protein interactions for RNA: ENST00000529661.1

C11orf88-204, Transcript of chromosome 11 open reading frame 88, humanhuman

TSL 3

Gene C11orf88, Length 624 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf88-204ENST00000529661 EP400Q96L91 3159 aa0.58□□□□□ -2.32
C11orf88-204ENST00000529661 PRKDCP78527 4128 aaKnown RBP0.58□□□□□ -2.32
C11orf88-204ENST00000529661 UNC80Q8N2C7 3258 aa0.58□□□□□ -2.32
C11orf88-204ENST00000529661 CEP250Q9BV73 2442 aa0.57□□□□□ -2.32
C11orf88-204ENST00000529661 ALMS1Q8TCU4 4167 aa0.57□□□□□ -2.32
C11orf88-204ENST00000529661 M0R1W7 72 aa0.57□□□□□ -2.32
C11orf88-204ENST00000529661 FCER1GP30273 86 aa0.57□□□□□ -2.32
C11orf88-204ENST00000529661 STAB2Q8WWQ8 2551 aa0.57□□□□□ -2.32
C11orf88-204ENST00000529661 FAT2Q9NYQ8 4349 aa0.57□□□□□ -2.32
C11orf88-204ENST00000529661 CLASP1Q7Z460 1538 aa0.57□□□□□ -2.32
C11orf88-204ENST00000529661 KMT2CQ8NEZ4 4911 aaKnown RBP0.57□□□□□ -2.32
C11orf88-204ENST00000529661 MTORP42345 2549 aa0.57□□□□□ -2.32
C11orf88-204ENST00000529661 MGAM2Q2M2H8 2515 aa0.57□□□□□ -2.32
C11orf88-204ENST00000529661 PCNX1Q96RV3 2341 aa0.56□□□□□ -2.32
C11orf88-204ENST00000529661 DSTQ03001 7570 aaKnown RBP0.56□□□□□ -2.32
C11orf88-204ENST00000529661 IAPPP10997 89 aa0.56□□□□□ -2.32
C11orf88-204ENST00000529661 HYDINQ4G0P3 5121 aa0.56□□□□□ -2.32
C11orf88-204ENST00000529661 C5orf42Q9H799 3197 aa0.56□□□□□ -2.32
C11orf88-204ENST00000529661 TNXBP22105 4242 aa0.56□□□□□ -2.32
C11orf88-204ENST00000529661 NEBP20929 6669 aa0.55□□□□□ -2.32
C11orf88-204ENST00000529661 HUWE1Q7Z6Z7 4374 aaKnown RBP0.55□□□□□ -2.32
C11orf88-204ENST00000529661 FANCD2Q9BXW9 1451 aa0.55□□□□□ -2.32
C11orf88-204ENST00000529661 RIF1Q5UIP0 2472 aaKnown RBP0.55□□□□□ -2.32
C11orf88-204ENST00000529661 ASPMQ8IZT6 3477 aa0.55□□□□□ -2.32
C11orf88-204ENST00000529661 IGIPA6NJ69 53 aa0.55□□□□□ -2.32
C11orf88-204ENST00000529661 DSPP15924 2871 aaKnown RBP0.55□□□□□ -2.32
C11orf88-204ENST00000529661 ITPR2Q14571 2701 aa0.55□□□□□ -2.32
C11orf88-204ENST00000529661 RELNP78509 3460 aa0.55□□□□□ -2.32
C11orf88-204ENST00000529661 COL12A1Q99715 3063 aa0.54□□□□□ -2.32
C11orf88-204ENST00000529661 EPPK1P58107 5090 aaKnown RBP0.54□□□□□ -2.32
C11orf88-204ENST00000529661 NF1P21359 2839 aa0.54□□□□□ -2.32
C11orf88-204ENST00000529661 NRXN3Q9Y4C0 1643 aa0.54□□□□□ -2.32
C11orf88-204ENST00000529661 ABCA13Q86UQ4 5058 aa0.54□□□□□ -2.32
C11orf88-204ENST00000529661 LOC730098B7Z3J9 87 aa0.54□□□□□ -2.32
C11orf88-204ENST00000529661 DEFB130BP0DP73 79 aa0.54□□□□□ -2.32
C11orf88-204ENST00000529661 DEFB130AP0DP74 79 aa0.54□□□□□ -2.32
C11orf88-204ENST00000529661 CRYBG3Q68DQ2 2970 aa0.54□□□□□ -2.32
C11orf88-204ENST00000529661 CELSR1Q9NYQ6 3014 aa0.54□□□□□ -2.32
C11orf88-204ENST00000529661 SPTBN5Q9NRC6 3674 aaKnown RBP0.54□□□□□ -2.32
C11orf88-204ENST00000529661 RYR3Q15413 4870 aa0.54□□□□□ -2.32
C11orf88-204ENST00000529661 LRBAP50851 2863 aa0.53□□□□□ -2.32
C11orf88-204ENST00000529661 WNK1Q9H4A3 2382 aa0.53□□□□□ -2.32
C11orf88-204ENST00000529661 SYNE1Q8NF91 8797 aaKnown RBP0.53□□□□□ -2.32
C11orf88-204ENST00000529661 M0R2T5 61 aa0.53□□□□□ -2.32
C11orf88-204ENST00000529661 CENPFP49454 3210 aa0.53□□□□□ -2.32
C11orf88-204ENST00000529661 LRP1Q07954 4544 aaKnown RBP0.53□□□□□ -2.32
C11orf88-204ENST00000529661 TGP01266 2768 aa0.53□□□□□ -2.32
C11orf88-204ENST00000529661 BIRC6Q9NR09 4857 aa0.53□□□□□ -2.32
C11orf88-204ENST00000529661 ABCA5Q8WWZ7 1642 aa0.53□□□□□ -2.33
C11orf88-204ENST00000529661 CEP290O15078 2479 aa0.53□□□□□ -2.33
C11orf88-204ENST00000529661 LAMA3Q16787 3333 aa0.52□□□□□ -2.33
C11orf88-204ENST00000529661 BRCA2P51587 3418 aa0.52□□□□□ -2.33
C11orf88-204ENST00000529661 DNHD1Q96M86 4753 aa0.52□□□□□ -2.33
C11orf88-204ENST00000529661 PRM1P04553 51 aa0.52□□□□□ -2.33
C11orf88-204ENST00000529661 SSPOA2VEC9 5147 aa0.52□□□□□ -2.33
C11orf88-204ENST00000529661 WDR87Q6ZQQ6 2873 aa0.52□□□□□ -2.33
C11orf88-204ENST00000529661 CFAP54Q96N23 3096 aa0.52□□□□□ -2.33
C11orf88-204ENST00000529661 FAM186AA6NE01 2351 aa0.52□□□□□ -2.33
C11orf88-204ENST00000529661 UTRNP46939 3433 aa0.51□□□□□ -2.33
C11orf88-204ENST00000529661 HERC1Q15751 4861 aa0.51□□□□□ -2.33
C11orf88-204ENST00000529661 MINOS1Q5TGZ0 78 aa0.51□□□□□ -2.33
C11orf88-204ENST00000529661 DMBT1Q9UGM3 2413 aaPredicted RBP0.51□□□□□ -2.33
C11orf88-204ENST00000529661 PRRC2CQ9Y520 2896 aaKnown RBP0.51□□□□□ -2.33
C11orf88-204ENST00000529661 HTTP42858 3142 aa0.51□□□□□ -2.33
C11orf88-204ENST00000529661 DCHS1Q96JQ0 3298 aa0.5□□□□□ -2.33
C11orf88-204ENST00000529661 AGLP35573 1532 aa0.5□□□□□ -2.33
C11orf88-204ENST00000529661 KMT2DO14686 5537 aa0.5□□□□□ -2.33
C11orf88-204ENST00000529661 DEFB135Q30KP9 77 aa0.5□□□□□ -2.33
C11orf88-204ENST00000529661 FAT4Q6V0I7 4981 aa0.5□□□□□ -2.33
C11orf88-204ENST00000529661 MYCBP2O75592 4640 aa0.5□□□□□ -2.33
C11orf88-204ENST00000529661 HIVEP1P15822 2718 aa0.5□□□□□ -2.33
C11orf88-204ENST00000529661 ACANP16112 2415 aa0.49□□□□□ -2.33
C11orf88-204ENST00000529661 ABCC8Q09428 1581 aa0.49□□□□□ -2.33
C11orf88-204ENST00000529661 NBASA2RRP1 2371 aa0.49□□□□□ -2.33
C11orf88-204ENST00000529661 COL7A1Q02388 2944 aa0.49□□□□□ -2.33
C11orf88-204ENST00000529661 KMT2AQ03164 3969 aa0.49□□□□□ -2.33
C11orf88-204ENST00000529661 MUC3AQ02505 3323 aa0.49□□□□□ -2.33
C11orf88-204ENST00000529661 NIPBLQ6KC79 2804 aaeCLIP0.48□□□□□ -2.33
C11orf88-204ENST00000529661 APC2O95996 2303 aa0.48□□□□□ -2.33
C11orf88-204ENST00000529661 A0A1B0GUL6 1792 aa0.48□□□□□ -2.33
C11orf88-204ENST00000529661 C6orf48Q9UBA6 75 aa0.48□□□□□ -2.33
C11orf88-204ENST00000529661 HRNRQ86YZ3 2850 aaPredicted RBP0.48□□□□□ -2.33
C11orf88-204ENST00000529661 PHGR1C9JFL3 82 aa0.47□□□□□ -2.33
C11orf88-204ENST00000529661 RPS27P42677 84 aaKnown RBP0.47□□□□□ -2.33
C11orf88-204ENST00000529661 RPS27LQ71UM5 84 aaKnown RBP0.47□□□□□ -2.33
C11orf88-204ENST00000529661 RNF213Q63HN8 5207 aa0.47□□□□□ -2.33
C11orf88-204ENST00000529661 H0YGX0 51 aa0.46□□□□□ -2.34
C11orf88-204ENST00000529661 FRYLO94915 3013 aa0.46□□□□□ -2.34
C11orf88-204ENST00000529661 LMO7Q8WWI1 1683 aa0.46□□□□□ -2.34
C11orf88-204ENST00000529661 MAP1AP78559 2803 aaPredicted RBP0.46□□□□□ -2.34
C11orf88-204ENST00000529661 GOLGB1Q14789 3259 aaKnown RBP0.46□□□□□ -2.34
C11orf88-204ENST00000529661 EFCAB6Q5THR3 1501 aa0.45□□□□□ -2.34
C11orf88-204ENST00000529661 DMXL2Q8TDJ6 3036 aa0.45□□□□□ -2.34
C11orf88-204ENST00000529661 SPRR2DP22532 72 aa0.45□□□□□ -2.34
C11orf88-204ENST00000529661 WT1-ASQ06250 92 aa0.45□□□□□ -2.34
C11orf88-204ENST00000529661 TMEM167BQ9NRX6 74 aa0.45□□□□□ -2.34
C11orf88-204ENST00000529661 USP34Q70CQ2 3546 aa0.44□□□□□ -2.34
C11orf88-204ENST00000529661 FREM2Q5SZK8 3169 aa0.44□□□□□ -2.34
C11orf88-204ENST00000529661 VPS13AQ96RL7 3174 aa0.44□□□□□ -2.34
C11orf88-204ENST00000529661 MDN1Q9NU22 5596 aa0.44□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms