RNA–Protein interactions for RNA: ENST00000513761.5

CLCN3-209, Transcript of chloride voltage-gated channel 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCN3, Length 6,692 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-209ENST00000513761 CUBNO60494 3623 aa4.64□□□□□ -1.67
CLCN3-209ENST00000513761 CSAG1Q6PB30 78 aa4.64□□□□□ -1.67
CLCN3-209ENST00000513761 A0A087X002 238 aa4.64□□□□□ -1.67
CLCN3-209ENST00000513761 NOTCH2NLQ7Z3S9 236 aa4.64□□□□□ -1.67
CLCN3-209ENST00000513761 Q6ZR54 194 aa4.64□□□□□ -1.67
CLCN3-209ENST00000513761 PLAC8Q9NZF1 115 aa4.63□□□□□ -1.67
CLCN3-209ENST00000513761 SPENQ96T58 3664 aaKnown RBP4.61□□□□□ -1.67
CLCN3-209ENST00000513761 A0A1B0GU33 70 aa4.61□□□□□ -1.67
CLCN3-209ENST00000513761 CRIPTQ9P021 101 aa4.6□□□□□ -1.67
CLCN3-209ENST00000513761 H3BS24 57 aa4.6□□□□□ -1.67
CLCN3-209ENST00000513761 DMAC1Q96GE9 116 aa4.59□□□□□ -1.67
CLCN3-209ENST00000513761 A6NN06 94 aa4.59□□□□□ -1.67
CLCN3-209ENST00000513761 LINC00483Q53H64 154 aa4.58□□□□□ -1.68
CLCN3-209ENST00000513761 DMBT1Q9UGM3 2413 aaPredicted RBP4.56□□□□□ -1.68
CLCN3-209ENST00000513761 ADM2Q7Z4H4 148 aa4.54□□□□□ -1.68
CLCN3-209ENST00000513761 KMT2BQ9UMN6 2715 aaPredicted RBP4.51□□□□□ -1.69
CLCN3-209ENST00000513761 SPATA8Q6RVD6 105 aa4.5□□□□□ -1.69
CLCN3-209ENST00000513761 KRTAP10-2P60368 255 aa4.5□□□□□ -1.69
CLCN3-209ENST00000513761 KRTAP13-1Q8IUC0 172 aa4.48□□□□□ -1.69
CLCN3-209ENST00000513761 KRTAP10-1P60331 282 aa4.47□□□□□ -1.69
CLCN3-209ENST00000513761 FLG2Q5D862 2391 aaPredicted RBP4.46□□□□□ -1.69
CLCN3-209ENST00000513761 Q6ZRN7 208 aaPredicted RBP4.46□□□□□ -1.7
CLCN3-209ENST00000513761 H1FX-AS1Q4G0G2 97 aa4.44□□□□□ -1.7
CLCN3-209ENST00000513761 TENM3Q9P273 2699 aa4.44□□□□□ -1.7
CLCN3-209ENST00000513761 ASB16-AS1Q495Z4 193 aa4.44□□□□□ -1.7
CLCN3-209ENST00000513761 RPL37P61927 97 aaKnown RBP4.4□□□□□ -1.7
CLCN3-209ENST00000513761 ROMO1P60602 79 aa4.4□□□□□ -1.7
CLCN3-209ENST00000513761 S4R3F8 94 aa4.4□□□□□ -1.71
CLCN3-209ENST00000513761 KRTAP13-2Q52LG2 175 aa4.39□□□□□ -1.71
CLCN3-209ENST00000513761 BSNQ9UPA5 3926 aa4.38□□□□□ -1.71
CLCN3-209ENST00000513761 VWFP04275 2813 aa4.38□□□□□ -1.71
CLCN3-209ENST00000513761 PDZD2O15018 2839 aa4.38□□□□□ -1.71
CLCN3-209ENST00000513761 TENM1Q9UKZ4 2725 aa4.37□□□□□ -1.71
CLCN3-209ENST00000513761 KRTAP25-1Q3LHN0 102 aa4.37□□□□□ -1.71
CLCN3-209ENST00000513761 COX6B2Q6YFQ2 88 aa4.36□□□□□ -1.71
CLCN3-209ENST00000513761 CSMD2Q7Z408 3487 aa4.36□□□□□ -1.71
CLCN3-209ENST00000513761 NBPF19A0A087WUL8 3843 aa4.35□□□□□ -1.71
CLCN3-209ENST00000513761 Q6ZSA8 131 aa4.35□□□□□ -1.71
CLCN3-209ENST00000513761 TENM4Q6N022 2769 aa4.35□□□□□ -1.71
CLCN3-209ENST00000513761 LUZP6Q538Z0 58 aa4.32□□□□□ -1.72
CLCN3-209ENST00000513761 FBN1P35555 2871 aaKnown RBP4.31□□□□□ -1.72
CLCN3-209ENST00000513761 J3QL48 77 aa4.3□□□□□ -1.72
CLCN3-209ENST00000513761 PKD1L1Q8TDX9 2849 aa4.3□□□□□ -1.72
CLCN3-209ENST00000513761 CAMK2N1Q7Z7J9 78 aa4.29□□□□□ -1.72
CLCN3-209ENST00000513761 TGP01266 2768 aa4.29□□□□□ -1.72
CLCN3-209ENST00000513761 R4GN34 69 aa4.27□□□□□ -1.73
CLCN3-209ENST00000513761 A8MUU9 505 aa4.25□□□□□ -1.73
CLCN3-209ENST00000513761 VPS13CQ709C8 3753 aa4.24□□□□□ -1.73
CLCN3-209ENST00000513761 M0QZ58 72 aa4.24□□□□□ -1.73
CLCN3-209ENST00000513761 ZFHX3Q15911 3703 aa4.24□□□□□ -1.73
CLCN3-209ENST00000513761 H0YAA0 97 aa4.23□□□□□ -1.73
CLCN3-209ENST00000513761 OTOGQ6ZRI0 2925 aa4.22□□□□□ -1.73
CLCN3-209ENST00000513761 Q5VSD8 79 aa4.22□□□□□ -1.73
CLCN3-209ENST00000513761 RPS29P62273 56 aaKnown RBP4.22□□□□□ -1.73
CLCN3-209ENST00000513761 NDUFAF8A1L188 74 aa4.22□□□□□ -1.73
CLCN3-209ENST00000513761 TRRAPQ9Y4A5 3859 aa4.21□□□□□ -1.74
CLCN3-209ENST00000513761 KRTAP16-1A8MUX0 517 aa4.2□□□□□ -1.74
CLCN3-209ENST00000513761 KRTAP1-4P0C5Y4 121 aa4.2□□□□□ -1.74
CLCN3-209ENST00000513761 KRTAP13-3Q3SY46 172 aa4.2□□□□□ -1.74
CLCN3-209ENST00000513761 SRRM2Q9UQ35 2752 aaKnown RBP4.2□□□□□ -1.74
CLCN3-209ENST00000513761 TENM2Q9NT68 2774 aa4.17□□□□□ -1.74
CLCN3-209ENST00000513761 C20orf166-AS1Q96NR2 134 aa4.17□□□□□ -1.74
CLCN3-209ENST00000513761 C10orf95Q9H7T3 257 aa4.17□□□□□ -1.74
CLCN3-209ENST00000513761 ANK3Q12955 4377 aaKnown RBP4.15□□□□□ -1.74
CLCN3-209ENST00000513761 A0A0A0MQY5 61 aa4.15□□□□□ -1.74
CLCN3-209ENST00000513761 FBN3Q75N90 2809 aa4.1□□□□□ -1.75
CLCN3-209ENST00000513761 SEC61BP60468 96 aaKnown RBP4.1□□□□□ -1.75
CLCN3-209ENST00000513761 M0R2T5 61 aa4.07□□□□□ -1.76
CLCN3-209ENST00000513761 ZNF469Q96JG9 3925 aaPredicted RBP4.04□□□□□ -1.76
CLCN3-209ENST00000513761 CSMD3Q7Z407 3707 aa4.04□□□□□ -1.76
CLCN3-209ENST00000513761 P0C880 135 aa4.03□□□□□ -1.76
CLCN3-209ENST00000513761 XP32Q5T750 250 aa4.02□□□□□ -1.77
CLCN3-209ENST00000513761 MEGF8Q7Z7M0 2845 aa4.01□□□□□ -1.77
CLCN3-209ENST00000513761 AKAP9Q99996 3911 aa3.99□□□□□ -1.77
CLCN3-209ENST00000513761 PLAC4Q8WY50 150 aa3.99□□□□□ -1.77
CLCN3-209ENST00000513761 COL7A1Q02388 2944 aa3.98□□□□□ -1.77
CLCN3-209ENST00000513761 KRTAP3-1Q9BYR8 98 aa3.97□□□□□ -1.77
CLCN3-209ENST00000513761 KRTAP12-2P59991 146 aa3.93□□□□□ -1.78
CLCN3-209ENST00000513761 TPRXLQ17RH7 258 aa3.93□□□□□ -1.78
CLCN3-209ENST00000513761 KRTAP10-8P60410 259 aa3.92□□□□□ -1.78
CLCN3-209ENST00000513761 TNP1P09430 55 aa3.89□□□□□ -1.79
CLCN3-209ENST00000513761 HUWE1Q7Z6Z7 4374 aaKnown RBP3.89□□□□□ -1.79
CLCN3-209ENST00000513761 KRTAP13-4Q3LI77 160 aa3.88□□□□□ -1.79
CLCN3-209ENST00000513761 KRTAP12-1P59990 96 aa3.85□□□□□ -1.79
CLCN3-209ENST00000513761 PP632Q6XCG6 107 aa3.84□□□□□ -1.79
CLCN3-209ENST00000513761 KRTAP10-6P60371 365 aaPredicted RBP3.84□□□□□ -1.79
CLCN3-209ENST00000513761 A0A1B0GVY2 172 aa3.83□□□□□ -1.8
CLCN3-209ENST00000513761 KRTAP21-3Q3LHN1 58 aa3.8□□□□□ -1.8
CLCN3-209ENST00000513761 DNAH10Q8IVF4 4471 aa3.78□□□□□ -1.8
CLCN3-209ENST00000513761 KRTAP3-2Q9BYR7 98 aa3.73□□□□□ -1.81
CLCN3-209ENST00000513761 KRTAP3-3Q9BYR6 98 aa3.73□□□□□ -1.81
CLCN3-209ENST00000513761 KRTAP15-1Q3LI76 137 aa3.71□□□□□ -1.82
CLCN3-209ENST00000513761 PLECQ15149 4684 aaKnown RBP3.69□□□□□ -1.82
CLCN3-209ENST00000513761 DNAH9Q9NYC9 4486 aa3.68□□□□□ -1.82
CLCN3-209ENST00000513761 DNAH1Q9P2D7 4330 aa3.68□□□□□ -1.82
CLCN3-209ENST00000513761 DNAH11Q96DT5 4516 aa3.63□□□□□ -1.83
CLCN3-209ENST00000513761 KRTAP10-10P60014 251 aa3.62□□□□□ -1.83
CLCN3-209ENST00000513761 KRTAP10-4P60372 401 aaPredicted RBP3.6□□□□□ -1.83
CLCN3-209ENST00000513761 DNAH8Q96JB1 4490 aa3.58□□□□□ -1.84
CLCN3-209ENST00000513761 DNAH5Q8TE73 4624 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms