RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 SPRR1BP22528 89 aa1.9□□□□□ -2.11
NUP54-212ENST00000513248 VAMP8Q9BV40 100 aa1.9□□□□□ -2.11
NUP54-212ENST00000513248 SNHG12Q9BXW3 62 aa1.9□□□□□ -2.11
NUP54-212ENST00000513248 SPATA45Q537H7 98 aa1.89□□□□□ -2.11
NUP54-212ENST00000513248 BVES-AS1Q5T3Y7 98 aa1.89□□□□□ -2.11
NUP54-212ENST00000513248 C14orf144Q96I85 54 aa1.89□□□□□ -2.11
NUP54-212ENST00000513248 A0A0G2JQZ4 141 aa1.88□□□□□ -2.11
NUP54-212ENST00000513248 COX8AP10176 69 aa1.88□□□□□ -2.11
NUP54-212ENST00000513248 PSMB2P49721 201 aa1.88□□□□□ -2.11
NUP54-212ENST00000513248 CD164Q04900 197 aa1.88□□□□□ -2.11
NUP54-212ENST00000513248 Q6JHZ5 121 aa1.88□□□□□ -2.11
NUP54-212ENST00000513248 LINC00575Q6W349 94 aa1.88□□□□□ -2.11
NUP54-212ENST00000513248 Q6ZQY7 126 aa1.88□□□□□ -2.11
NUP54-212ENST00000513248 TNXBP22105 4242 aa1.88□□□□□ -2.11
NUP54-212ENST00000513248 IGLV5-48A0A075B6I7 105 aa1.87□□□□□ -2.11
NUP54-212ENST00000513248 FABP2P12104 132 aa1.87□□□□□ -2.11
NUP54-212ENST00000513248 ASB16-AS1Q495Z4 193 aa1.87□□□□□ -2.11
NUP54-212ENST00000513248 OCIAD2Q56VL3 154 aa1.87□□□□□ -2.11
NUP54-212ENST00000513248 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.87□□□□□ -2.11
NUP54-212ENST00000513248 H0YGX0 51 aa1.86□□□□□ -2.11
NUP54-212ENST00000513248 LST1O00453 97 aa1.86□□□□□ -2.11
NUP54-212ENST00000513248 DLEU1O43261 78 aa1.86□□□□□ -2.11
NUP54-212ENST00000513248 DNAL4O96015 105 aa1.86□□□□□ -2.11
NUP54-212ENST00000513248 PCOTHQ58A44 107 aa1.86□□□□□ -2.11
NUP54-212ENST00000513248 PPDPFLQ8WWR9 84 aa1.86□□□□□ -2.11
NUP54-212ENST00000513248 CLEC2BQ92478 149 aa1.86□□□□□ -2.11
NUP54-212ENST00000513248 A0A0B4J2C4 111 aa1.85□□□□□ -2.11
NUP54-212ENST00000513248 TRBV7-7A0A0K0K1E9 115 aa1.85□□□□□ -2.11
NUP54-212ENST00000513248 A0A1B0GV72 72 aa1.85□□□□□ -2.11
NUP54-212ENST00000513248 H3BUT2 72 aa1.85□□□□□ -2.11
NUP54-212ENST00000513248 BPY2O14599 106 aa1.85□□□□□ -2.11
NUP54-212ENST00000513248 COX6CP09669 75 aa1.85□□□□□ -2.11
NUP54-212ENST00000513248 SCGB1C2P0DMR2 95 aa1.85□□□□□ -2.11
NUP54-212ENST00000513248 C1orf195Q5TG92 126 aa1.85□□□□□ -2.11
NUP54-212ENST00000513248 COX6B2Q6YFQ2 88 aa1.85□□□□□ -2.11
NUP54-212ENST00000513248 HIGD1BQ9P298 99 aa1.85□□□□□ -2.11
NUP54-212ENST00000513248 SS18L2Q9UHA2 77 aa1.85□□□□□ -2.11
NUP54-212ENST00000513248 PRO1854Q9UHT4 67 aa1.85□□□□□ -2.11
NUP54-212ENST00000513248 A8MUU9 505 aa1.84□□□□□ -2.11
NUP54-212ENST00000513248 H3BMG7 143 aa1.84□□□□□ -2.11
NUP54-212ENST00000513248 M0R2T5 61 aa1.84□□□□□ -2.11
NUP54-212ENST00000513248 HSD52Q0P140 79 aa1.84□□□□□ -2.11
NUP54-212ENST00000513248 Q5XG85 94 aa1.84□□□□□ -2.11
NUP54-212ENST00000513248 Q6Q795 121 aa1.84□□□□□ -2.11
NUP54-212ENST00000513248 ATP11AUNQ6ZP68 121 aa1.84□□□□□ -2.11
NUP54-212ENST00000513248 A0A087WSZ3 146 aa1.83□□□□□ -2.12
NUP54-212ENST00000513248 A0A1B0GX51 115 aa1.83□□□□□ -2.12
NUP54-212ENST00000513248 H3BQ85 93 aa1.83□□□□□ -2.12
NUP54-212ENST00000513248 FXYD2P54710 66 aa1.83□□□□□ -2.12
NUP54-212ENST00000513248 RPL37P61927 97 aaKnown RBP1.83□□□□□ -2.12
NUP54-212ENST00000513248 KRTAP21-2Q3LI59 83 aa1.83□□□□□ -2.12
NUP54-212ENST00000513248 C2orf91Q6ZV80 131 aa1.83□□□□□ -2.12
NUP54-212ENST00000513248 TEN1Q86WV5 123 aa1.83□□□□□ -2.12
NUP54-212ENST00000513248 ANKRD29Q8N6D5 301 aa1.83□□□□□ -2.12
NUP54-212ENST00000513248 OBSCN-AS1Q96MR7 158 aa1.83□□□□□ -2.12
NUP54-212ENST00000513248 Q96NJ1 140 aa1.83□□□□□ -2.12
NUP54-212ENST00000513248 SIGMAR1Q99720 223 aa1.83□□□□□ -2.12
NUP54-212ENST00000513248 VPS25Q9BRG1 176 aa1.83□□□□□ -2.12
NUP54-212ENST00000513248 ORMDL1Q9P0S3 153 aa1.83□□□□□ -2.12
NUP54-212ENST00000513248 UQCR10Q9UDW1 63 aa1.83□□□□□ -2.12
NUP54-212ENST00000513248 LPAP08519 4548 aa1.82□□□□□ -2.12
NUP54-212ENST00000513248 SSPOA2VEC9 5147 aa1.82□□□□□ -2.12
NUP54-212ENST00000513248 TMEM256-PLSCR3K7ERE1 68 aa1.82□□□□□ -2.12
NUP54-212ENST00000513248 K7ERJ3 54 aa1.82□□□□□ -2.12
NUP54-212ENST00000513248 TRACP01848 142 aa1.82□□□□□ -2.12
NUP54-212ENST00000513248 KRTAP4-1Q9BYQ7 146 aa1.82□□□□□ -2.12
NUP54-212ENST00000513248 TRBV20-1A0A075B6N2 111 aa1.81□□□□□ -2.12
NUP54-212ENST00000513248 IGKV4-1P06312 121 aa1.81□□□□□ -2.12
NUP54-212ENST00000513248 PYY3Q5JQD4 70 aa1.81□□□□□ -2.12
NUP54-212ENST00000513248 DSCR8Q96T75 97 aa1.81□□□□□ -2.12
NUP54-212ENST00000513248 FAM236DA0A1B0GTK5 79 aa1.8□□□□□ -2.12
NUP54-212ENST00000513248 M0R143 59 aa1.8□□□□□ -2.12
NUP54-212ENST00000513248 CCKP06307 115 aa1.8□□□□□ -2.12
NUP54-212ENST00000513248 FAM236CP0DP71 79 aa1.8□□□□□ -2.12
NUP54-212ENST00000513248 SYNE2Q8WXH0 6885 aaKnown RBP1.8□□□□□ -2.12
NUP54-212ENST00000513248 IGHV6-1A0A0B4J1U7 121 aa1.79□□□□□ -2.12
NUP54-212ENST00000513248 BAALC-AS2P0C853 105 aa1.79□□□□□ -2.12
NUP54-212ENST00000513248 LINC00313P59037 77 aa1.79□□□□□ -2.12
NUP54-212ENST00000513248 RBM3P98179 157 aaKnown RBP1.79□□□□□ -2.12
NUP54-212ENST00000513248 ATXN8Q156A1 80 aa1.79□□□□□ -2.12
NUP54-212ENST00000513248 BATFQ16520 125 aa1.79□□□□□ -2.12
NUP54-212ENST00000513248 LYRM7Q5U5X0 104 aa1.79□□□□□ -2.12
NUP54-212ENST00000513248 TRBV7-4A0A0J9YYF1 115 aa1.78□□□□□ -2.12
NUP54-212ENST00000513248 A0A1W2PNM2 257 aa1.78□□□□□ -2.12
NUP54-212ENST00000513248 C9JAW5 83 aa1.78□□□□□ -2.12
NUP54-212ENST00000513248 NDUFB1O75438 58 aa1.78□□□□□ -2.12
NUP54-212ENST00000513248 NAA38Q9BRA0 125 aaKnown RBP1.78□□□□□ -2.12
NUP54-212ENST00000513248 C8orf17Q9NRJ1 99 aa1.78□□□□□ -2.12
NUP54-212ENST00000513248 TSTD3H0UI37 97 aa1.77□□□□□ -2.13
NUP54-212ENST00000513248 JMJD7-PLA2G4BH0Y9G9 81 aa1.77□□□□□ -2.13
NUP54-212ENST00000513248 SPANXA2-OT1Q8N9U9 137 aa1.77□□□□□ -2.13
NUP54-212ENST00000513248 C8orf87E5RJ46 101 aa1.76□□□□□ -2.13
NUP54-212ENST00000513248 J3KT08 172 aa1.76□□□□□ -2.13
NUP54-212ENST00000513248 MT1HP80294 61 aa1.76□□□□□ -2.13
NUP54-212ENST00000513248 C20orf166-AS1Q96NR2 134 aa1.76□□□□□ -2.13
NUP54-212ENST00000513248 RBM12B-AS1Q9P1G2 102 aa1.76□□□□□ -2.13
NUP54-212ENST00000513248 SMIM6P0DI80 62 aa1.75□□□□□ -2.13
NUP54-212ENST00000513248 PDE6GP18545 87 aa1.75□□□□□ -2.13
NUP54-212ENST00000513248 NREPQ16612 68 aa1.75□□□□□ -2.13
NUP54-212ENST00000513248 LINC00472Q9H8W2 130 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms