RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 TNP2Q05952 138 aa5.45□□□□□ -1.54
LIMCH1-218ENST00000513024 KRTAP10-3P60369 221 aa5.45□□□□□ -1.54
LIMCH1-218ENST00000513024 KRTAP25-1Q3LHN0 102 aa5.44□□□□□ -1.54
LIMCH1-218ENST00000513024 NBEAL2Q6ZNJ1 2754 aa5.44□□□□□ -1.54
LIMCH1-218ENST00000513024 DMBT1Q9UGM3 2413 aaPredicted RBP5.43□□□□□ -1.54
LIMCH1-218ENST00000513024 UNC79Q9P2D8 2635 aa5.42□□□□□ -1.54
LIMCH1-218ENST00000513024 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.41□□□□□ -1.54
LIMCH1-218ENST00000513024 SPATA8Q6RVD6 105 aa5.41□□□□□ -1.54
LIMCH1-218ENST00000513024 ZFHX3Q15911 3703 aa5.4□□□□□ -1.55
LIMCH1-218ENST00000513024 STAB2Q8WWQ8 2551 aa5.4□□□□□ -1.55
LIMCH1-218ENST00000513024 Q5VSD8 79 aa5.4□□□□□ -1.55
LIMCH1-218ENST00000513024 COL6A5A8TX70 2615 aa5.39□□□□□ -1.55
LIMCH1-218ENST00000513024 Q8NDZ9 215 aa5.38□□□□□ -1.55
LIMCH1-218ENST00000513024 ZNF469Q96JG9 3925 aaPredicted RBP5.38□□□□□ -1.55
LIMCH1-218ENST00000513024 H1FX-AS1Q4G0G2 97 aa5.37□□□□□ -1.55
LIMCH1-218ENST00000513024 SETXQ7Z333 2677 aaKnown RBP5.37□□□□□ -1.55
LIMCH1-218ENST00000513024 TEP1Q99973 2627 aaKnown RBP5.37□□□□□ -1.55
LIMCH1-218ENST00000513024 Q5W150 140 aa5.37□□□□□ -1.55
LIMCH1-218ENST00000513024 BAHCC1Q9P281 2608 aa5.37□□□□□ -1.55
LIMCH1-218ENST00000513024 ITPR2Q14571 2701 aa5.36□□□□□ -1.55
LIMCH1-218ENST00000513024 APCP25054 2843 aa5.36□□□□□ -1.55
LIMCH1-218ENST00000513024 ADM2Q7Z4H4 148 aa5.36□□□□□ -1.55
LIMCH1-218ENST00000513024 CUBNO60494 3623 aa5.35□□□□□ -1.55
LIMCH1-218ENST00000513024 NIPBLQ6KC79 2804 aaeCLIP5.34□□□□□ -1.55
LIMCH1-218ENST00000513024 ZCCHC13Q8WW36 166 aaKnown RBP5.34□□□□□ -1.56
LIMCH1-218ENST00000513024 R4GN34 69 aa5.33□□□□□ -1.56
LIMCH1-218ENST00000513024 PLAC4Q8WY50 150 aa5.32□□□□□ -1.56
LIMCH1-218ENST00000513024 LINC00472Q9H8W2 130 aa5.32□□□□□ -1.56
LIMCH1-218ENST00000513024 A0A087X002 238 aa5.3□□□□□ -1.56
LIMCH1-218ENST00000513024 S4R3F8 94 aa5.3□□□□□ -1.56
LIMCH1-218ENST00000513024 AKAP9Q99996 3911 aa5.29□□□□□ -1.56
LIMCH1-218ENST00000513024 PDZD2O15018 2839 aa5.28□□□□□ -1.56
LIMCH1-218ENST00000513024 SPRR1AP35321 89 aa5.26□□□□□ -1.57
LIMCH1-218ENST00000513024 C20orf166-AS1Q96NR2 134 aa5.26□□□□□ -1.57
LIMCH1-218ENST00000513024 Q6ZR54 194 aa5.25□□□□□ -1.57
LIMCH1-218ENST00000513024 PLAC8Q9NZF1 115 aa5.25□□□□□ -1.57
LIMCH1-218ENST00000513024 A8MU10 97 aa5.24□□□□□ -1.57
LIMCH1-218ENST00000513024 OTOGQ6ZRI0 2925 aa5.24□□□□□ -1.57
LIMCH1-218ENST00000513024 NSD1Q96L73 2696 aaPredicted RBP5.23□□□□□ -1.57
LIMCH1-218ENST00000513024 SPRR1BP22528 89 aa5.22□□□□□ -1.57
LIMCH1-218ENST00000513024 PANO1I0J062 215 aa5.2□□□□□ -1.58
LIMCH1-218ENST00000513024 KRTAP29-1A8MX34 341 aaPredicted RBP5.2□□□□□ -1.58
LIMCH1-218ENST00000513024 M0QZ58 72 aa5.2□□□□□ -1.58
LIMCH1-218ENST00000513024 A8MUU9 505 aa5.2□□□□□ -1.58
LIMCH1-218ENST00000513024 KRTAP26-1Q6PEX3 210 aa5.18□□□□□ -1.58
LIMCH1-218ENST00000513024 VWFP04275 2813 aa5.16□□□□□ -1.58
LIMCH1-218ENST00000513024 KRTAP11-1Q8IUC1 163 aa5.14□□□□□ -1.59
LIMCH1-218ENST00000513024 HIVEP1P15822 2718 aa5.13□□□□□ -1.59
LIMCH1-218ENST00000513024 KRTAP1-5Q9BYS1 174 aa5.11□□□□□ -1.59
LIMCH1-218ENST00000513024 KRTAP10-1P60331 282 aa5.1□□□□□ -1.59
LIMCH1-218ENST00000513024 TENM1Q9UKZ4 2725 aa5.08□□□□□ -1.6
LIMCH1-218ENST00000513024 KRTAP4-16G5E9R7 235 aaPredicted RBP5.08□□□□□ -1.6
LIMCH1-218ENST00000513024 C10orf95Q9H7T3 257 aa5.06□□□□□ -1.6
LIMCH1-218ENST00000513024 ANK3Q12955 4377 aaKnown RBP5.06□□□□□ -1.6
LIMCH1-218ENST00000513024 NOTCH2NLQ7Z3S9 236 aa5.05□□□□□ -1.6
LIMCH1-218ENST00000513024 KRTAP10-2P60368 255 aa5.03□□□□□ -1.6
LIMCH1-218ENST00000513024 TENM3Q9P273 2699 aa5.02□□□□□ -1.61
LIMCH1-218ENST00000513024 PKD1L1Q8TDX9 2849 aa5.02□□□□□ -1.61
LIMCH1-218ENST00000513024 FBN1P35555 2871 aaKnown RBP4.98□□□□□ -1.61
LIMCH1-218ENST00000513024 PP632Q6XCG6 107 aa4.98□□□□□ -1.61
LIMCH1-218ENST00000513024 P0C880 135 aa4.96□□□□□ -1.61
LIMCH1-218ENST00000513024 RPS29P62273 56 aaKnown RBP4.96□□□□□ -1.62
LIMCH1-218ENST00000513024 TRRAPQ9Y4A5 3859 aa4.94□□□□□ -1.62
LIMCH1-218ENST00000513024 TNP1P09430 55 aa4.94□□□□□ -1.62
LIMCH1-218ENST00000513024 KRTAP7-1Q8IUC3 87 aa4.89□□□□□ -1.63
LIMCH1-218ENST00000513024 ANK2Q01484 3957 aa4.81□□□□□ -1.64
LIMCH1-218ENST00000513024 SRRM2Q9UQ35 2752 aaKnown RBP4.8□□□□□ -1.64
LIMCH1-218ENST00000513024 KRTAP10-8P60410 259 aa4.79□□□□□ -1.64
LIMCH1-218ENST00000513024 TENM2Q9NT68 2774 aa4.79□□□□□ -1.64
LIMCH1-218ENST00000513024 H0YAA0 97 aa4.78□□□□□ -1.64
LIMCH1-218ENST00000513024 DNHD1Q96M86 4753 aa4.78□□□□□ -1.64
LIMCH1-218ENST00000513024 CMYA5Q8N3K9 4069 aa4.78□□□□□ -1.64
LIMCH1-218ENST00000513024 KRTAP13-2Q52LG2 175 aa4.78□□□□□ -1.64
LIMCH1-218ENST00000513024 KRTAP13-1Q8IUC0 172 aa4.76□□□□□ -1.65
LIMCH1-218ENST00000513024 Q6ZRN7 208 aaPredicted RBP4.76□□□□□ -1.65
LIMCH1-218ENST00000513024 COL7A1Q02388 2944 aa4.68□□□□□ -1.66
LIMCH1-218ENST00000513024 PRO2289Q9P1D8 64 aa4.66□□□□□ -1.66
LIMCH1-218ENST00000513024 MEGF8Q7Z7M0 2845 aa4.65□□□□□ -1.66
LIMCH1-218ENST00000513024 DNAH3Q8TD57 4116 aa4.65□□□□□ -1.67
LIMCH1-218ENST00000513024 TPRXLQ17RH7 258 aa4.65□□□□□ -1.67
LIMCH1-218ENST00000513024 TGP01266 2768 aa4.62□□□□□ -1.67
LIMCH1-218ENST00000513024 PRKDCP78527 4128 aaKnown RBP4.59□□□□□ -1.67
LIMCH1-218ENST00000513024 KRTAP10-10P60014 251 aa4.58□□□□□ -1.68
LIMCH1-218ENST00000513024 CSMD3Q7Z407 3707 aa4.57□□□□□ -1.68
LIMCH1-218ENST00000513024 FBN3Q75N90 2809 aa4.54□□□□□ -1.68
LIMCH1-218ENST00000513024 LYSTQ99698 3801 aa4.53□□□□□ -1.68
LIMCH1-218ENST00000513024 INE1O15225 51 aa4.5□□□□□ -1.69
LIMCH1-218ENST00000513024 KRTAP1-4P0C5Y4 121 aa4.5□□□□□ -1.69
LIMCH1-218ENST00000513024 HUWE1Q7Z6Z7 4374 aaKnown RBP4.5□□□□□ -1.69
LIMCH1-218ENST00000513024 DNAH9Q9NYC9 4486 aa4.5□□□□□ -1.69
LIMCH1-218ENST00000513024 XP32Q5T750 250 aa4.49□□□□□ -1.69
LIMCH1-218ENST00000513024 DNAH7Q8WXX0 4024 aa4.46□□□□□ -1.7
LIMCH1-218ENST00000513024 KRTAP13-3Q3SY46 172 aa4.45□□□□□ -1.7
LIMCH1-218ENST00000513024 DNAH10Q8IVF4 4471 aa4.44□□□□□ -1.7
LIMCH1-218ENST00000513024 A0A1B0GVY2 172 aa4.44□□□□□ -1.7
LIMCH1-218ENST00000513024 STARD9Q9P2P6 4700 aa4.41□□□□□ -1.7
LIMCH1-218ENST00000513024 KRTAP12-2P59991 146 aa4.39□□□□□ -1.71
LIMCH1-218ENST00000513024 KRTAP13-4Q3LI77 160 aa4.38□□□□□ -1.71
LIMCH1-218ENST00000513024 PLECQ15149 4684 aaKnown RBP4.37□□□□□ -1.71
LIMCH1-218ENST00000513024 KRTAP15-1Q3LI76 137 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms