RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 PCOTHQ58A44 107 aa10.58□□□□□ -0.72
CCHCR1-228ENST00000509552 SPINK6Q6UWN8 80 aa10.58□□□□□ -0.72
CCHCR1-228ENST00000509552 SSBP3-AS1Q7Z2R9 100 aa10.57□□□□□ -0.72
CCHCR1-228ENST00000509552 A0A087X002 238 aa10.56□□□□□ -0.72
CCHCR1-228ENST00000509552 PSPHP1O15172 72 aa10.56□□□□□ -0.72
CCHCR1-228ENST00000509552 NOTCH2NLQ7Z3S9 236 aa10.56□□□□□ -0.72
CCHCR1-228ENST00000509552 KRTAP10-2P60368 255 aa10.53□□□□□ -0.72
CCHCR1-228ENST00000509552 COA5Q86WW8 74 aa10.51□□□□□ -0.73
CCHCR1-228ENST00000509552 C1orf195Q5TG92 126 aa10.51□□□□□ -0.73
CCHCR1-228ENST00000509552 DNAH6Q9C0G6 4158 aa10.5□□□□□ -0.73
CCHCR1-228ENST00000509552 DNHD1Q96M86 4753 aa10.49□□□□□ -0.73
CCHCR1-228ENST00000509552 Q8N9P0 234 aaPredicted RBP10.49□□□□□ -0.73
CCHCR1-228ENST00000509552 LIMD2Q9BT23 127 aa10.49□□□□□ -0.73
CCHCR1-228ENST00000509552 ALMS1Q8TCU4 4167 aa10.48□□□□□ -0.73
CCHCR1-228ENST00000509552 A8MUN3 132 aa10.48□□□□□ -0.73
CCHCR1-228ENST00000509552 C8orf87E5RJ46 101 aa10.47□□□□□ -0.73
CCHCR1-228ENST00000509552 DNAH5Q8TE73 4624 aa10.47□□□□□ -0.73
CCHCR1-228ENST00000509552 DNAH11Q96DT5 4516 aa10.47□□□□□ -0.73
CCHCR1-228ENST00000509552 LOC101927531A0A1B0GV80 90 aa10.46□□□□□ -0.73
CCHCR1-228ENST00000509552 Q6ZSA8 131 aa10.43□□□□□ -0.74
CCHCR1-228ENST00000509552 KRTAP10-1P60331 282 aa10.41□□□□□ -0.74
CCHCR1-228ENST00000509552 Q5VV11 94 aa10.41□□□□□ -0.74
CCHCR1-228ENST00000509552 Q5W150 140 aa10.41□□□□□ -0.74
CCHCR1-228ENST00000509552 KRTAP13-2Q52LG2 175 aa10.39□□□□□ -0.75
CCHCR1-228ENST00000509552 PRR15LQ9BU68 103 aa10.39□□□□□ -0.75
CCHCR1-228ENST00000509552 LINC00313P59037 77 aa10.39□□□□□ -0.75
CCHCR1-228ENST00000509552 KRTAP13-3Q3SY46 172 aa10.39□□□□□ -0.75
CCHCR1-228ENST00000509552 CHKB-CPT1BH3BT56 60 aa10.35□□□□□ -0.75
CCHCR1-228ENST00000509552 HRES1P13985 223 aa10.35□□□□□ -0.75
CCHCR1-228ENST00000509552 PKD1P98161 4303 aa10.32□□□□□ -0.76
CCHCR1-228ENST00000509552 FAM229AH3BQW9 127 aa10.31□□□□□ -0.76
CCHCR1-228ENST00000509552 LRP1BQ9NZR2 4599 aa10.3□□□□□ -0.76
CCHCR1-228ENST00000509552 SPAG11AQ6PDA7 123 aa10.29□□□□□ -0.76
CCHCR1-228ENST00000509552 Q75L30 129 aa10.29□□□□□ -0.76
CCHCR1-228ENST00000509552 KRTAP1-4P0C5Y4 121 aa10.29□□□□□ -0.76
CCHCR1-228ENST00000509552 LINC01558Q9Y6Z2 57 aa10.28□□□□□ -0.76
CCHCR1-228ENST00000509552 FAT2Q9NYQ8 4349 aa10.28□□□□□ -0.76
CCHCR1-228ENST00000509552 HYDINQ4G0P3 5121 aa10.25□□□□□ -0.77
CCHCR1-228ENST00000509552 C4orf48Q5BLP8 95 aa10.25□□□□□ -0.77
CCHCR1-228ENST00000509552 ACYP2P14621 99 aa10.24□□□□□ -0.77
CCHCR1-228ENST00000509552 PLA2G1BP04054 148 aaKnown RBP10.23□□□□□ -0.77
CCHCR1-228ENST00000509552 RETNLBQ9BQ08 111 aa10.23□□□□□ -0.77
CCHCR1-228ENST00000509552 A6NED7 52 aa10.22□□□□□ -0.77
CCHCR1-228ENST00000509552 TYMSOSQ8TAI1 123 aa10.21□□□□□ -0.77
CCHCR1-228ENST00000509552 KRTAP16-1A8MUX0 517 aa10.2□□□□□ -0.78
CCHCR1-228ENST00000509552 IGKV2-30P06310 120 aa10.19□□□□□ -0.78
CCHCR1-228ENST00000509552 VPS13BQ7Z7G8 4022 aa10.19□□□□□ -0.78
CCHCR1-228ENST00000509552 A8MU10 97 aa10.17□□□□□ -0.78
CCHCR1-228ENST00000509552 SPINK1P00995 79 aa10.17□□□□□ -0.78
CCHCR1-228ENST00000509552 DMAC1Q96GE9 116 aa10.17□□□□□ -0.78
CCHCR1-228ENST00000509552 PRR26Q8N8Z3 221 aa10.17□□□□□ -0.78
CCHCR1-228ENST00000509552 LCA10Q71F78 164 aa10.12□□□□□ -0.79
CCHCR1-228ENST00000509552 CDC42SE1Q9NRR8 79 aa10.1□□□□□ -0.79
CCHCR1-228ENST00000509552 PMAIP1Q13794 54 aa10.09□□□□□ -0.79
CCHCR1-228ENST00000509552 IGKV2D-30A0A075B6S6 120 aa10.07□□□□□ -0.8
CCHCR1-228ENST00000509552 KRTAP21-3Q3LHN1 58 aa10.07□□□□□ -0.8
CCHCR1-228ENST00000509552 ATP11AUNQ6ZP68 121 aa10.07□□□□□ -0.8
CCHCR1-228ENST00000509552 SPTSSBQ8NFR3 76 aa10.07□□□□□ -0.8
CCHCR1-228ENST00000509552 LINC00304Q8N9R0 145 aa10.06□□□□□ -0.8
CCHCR1-228ENST00000509552 RPS29P62273 56 aaKnown RBP10.05□□□□□ -0.8
CCHCR1-228ENST00000509552 SPINK7P58062 85 aa10.04□□□□□ -0.8
CCHCR1-228ENST00000509552 PKHD1P08F94 4074 aa9.98□□□□□ -0.81
CCHCR1-228ENST00000509552 C7orf65Q6ZTY9 151 aa9.98□□□□□ -0.81
CCHCR1-228ENST00000509552 SMR3BP02814 79 aaPredicted RBP9.97□□□□□ -0.81
CCHCR1-228ENST00000509552 SACSQ9NZJ4 4579 aa9.95□□□□□ -0.82
CCHCR1-228ENST00000509552 A0A1B0GU69 56 aa9.94□□□□□ -0.82
CCHCR1-228ENST00000509552 DYNC1H1Q14204 4646 aaKnown RBP9.89□□□□□ -0.83
CCHCR1-228ENST00000509552 A6NN06 94 aa9.88□□□□□ -0.83
CCHCR1-228ENST00000509552 A0A1B0GVY2 172 aa9.87□□□□□ -0.83
CCHCR1-228ENST00000509552 KTN1-AS1Q86SY8 53 aa9.85□□□□□ -0.83
CCHCR1-228ENST00000509552 C9orf92A6NGG3 77 aa9.82□□□□□ -0.84
CCHCR1-228ENST00000509552 KRTAP10-4P60372 401 aaPredicted RBP9.81□□□□□ -0.84
CCHCR1-228ENST00000509552 Q8N1X5 172 aa9.81□□□□□ -0.84
CCHCR1-228ENST00000509552 C20orf166-AS1Q96NR2 134 aa9.79□□□□□ -0.84
CCHCR1-228ENST00000509552 A8MUU9 505 aa9.79□□□□□ -0.84
CCHCR1-228ENST00000509552 PKHD1L1Q86WI1 4243 aa9.77□□□□□ -0.85
CCHCR1-228ENST00000509552 APOBP04114 4563 aaKnown RBP9.77□□□□□ -0.85
CCHCR1-228ENST00000509552 UQCR11O14957 56 aa9.76□□□□□ -0.85
CCHCR1-228ENST00000509552 FAT1Q14517 4588 aa9.76□□□□□ -0.85
CCHCR1-228ENST00000509552 SPATA8Q6RVD6 105 aa9.74□□□□□ -0.85
CCHCR1-228ENST00000509552 SEC61GP60059 68 aa9.72□□□□□ -0.85
CCHCR1-228ENST00000509552 MIR22HGQ0VDD5 57 aa9.72□□□□□ -0.85
CCHCR1-228ENST00000509552 RYR2Q92736 4967 aa9.64□□□□□ -0.87
CCHCR1-228ENST00000509552 KRTAP3-1Q9BYR8 98 aa9.57□□□□□ -0.88
CCHCR1-228ENST00000509552 RBM12B-AS1Q9P1G2 102 aa9.55□□□□□ -0.88
CCHCR1-228ENST00000509552 FLG2Q5D862 2391 aaPredicted RBP9.54□□□□□ -0.88
CCHCR1-228ENST00000509552 COX6B2Q6YFQ2 88 aa9.49□□□□□ -0.89
CCHCR1-228ENST00000509552 KMT2CQ8NEZ4 4911 aaKnown RBP9.48□□□□□ -0.89
CCHCR1-228ENST00000509552 KRTAP10-8P60410 259 aa9.48□□□□□ -0.89
CCHCR1-228ENST00000509552 Q5VSD8 79 aa9.45□□□□□ -0.9
CCHCR1-228ENST00000509552 FAT3Q8TDW7 4589 aa9.45□□□□□ -0.9
CCHCR1-228ENST00000509552 TNXBP22105 4242 aa9.43□□□□□ -0.9
CCHCR1-228ENST00000509552 A0A1B0GU33 70 aa9.41□□□□□ -0.9
CCHCR1-228ENST00000509552 PRAC1Q96KF2 57 aa9.39□□□□□ -0.91
CCHCR1-228ENST00000509552 LRP1Q07954 4544 aaKnown RBP9.38□□□□□ -0.91
CCHCR1-228ENST00000509552 H0YAA0 97 aa9.38□□□□□ -0.91
CCHCR1-228ENST00000509552 ADM2Q7Z4H4 148 aa9.37□□□□□ -0.91
CCHCR1-228ENST00000509552 RPL37P61927 97 aaKnown RBP9.37□□□□□ -0.91
CCHCR1-228ENST00000509552 H1FX-AS1Q4G0G2 97 aa9.37□□□□□ -0.91
CCHCR1-228ENST00000509552 HSPG2P98160 4391 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 241.7 ms