RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 BOD1L1Q8NFC6 3051 aa0.83□□□□□ -2.28
USP53-204ENST00000507906 TLN1Q9Y490 2541 aaKnown RBP0.83□□□□□ -2.28
USP53-204ENST00000507906 TLN2Q9Y4G6 2542 aa0.83□□□□□ -2.28
USP53-204ENST00000507906 DCHS2Q6V1P9 2916 aa0.83□□□□□ -2.28
USP53-204ENST00000507906 AKAP13Q12802 2813 aa0.83□□□□□ -2.28
USP53-204ENST00000507906 DMXL1Q9Y485 3027 aa0.83□□□□□ -2.28
USP53-204ENST00000507906 HTN1P15515 57 aa0.83□□□□□ -2.28
USP53-204ENST00000507906 SPRR1AP35321 89 aa0.83□□□□□ -2.28
USP53-204ENST00000507906 Q6ZRX8 168 aa0.83□□□□□ -2.28
USP53-204ENST00000507906 WFDC10BQ8IUB3 73 aa0.83□□□□□ -2.28
USP53-204ENST00000507906 LINC00472Q9H8W2 130 aa0.83□□□□□ -2.28
USP53-204ENST00000507906 CELSR3Q9NYQ7 3312 aa0.83□□□□□ -2.28
USP53-204ENST00000507906 CHD6Q8TD26 2715 aa0.83□□□□□ -2.28
USP53-204ENST00000507906 APCP25054 2843 aa0.83□□□□□ -2.28
USP53-204ENST00000507906 CREBBPQ92793 2442 aa0.83□□□□□ -2.28
USP53-204ENST00000507906 JMJD1CQ15652 2540 aa0.82□□□□□ -2.28
USP53-204ENST00000507906 A0A087WTM6 91 aa0.82□□□□□ -2.28
USP53-204ENST00000507906 UQCR11O14957 56 aa0.82□□□□□ -2.28
USP53-204ENST00000507906 DEFB136Q30KP8 78 aa0.82□□□□□ -2.28
USP53-204ENST00000507906 DEFB105AQ8NG35 78 aa0.82□□□□□ -2.28
USP53-204ENST00000507906 Q96NJ1 140 aa0.82□□□□□ -2.28
USP53-204ENST00000507906 NOP10Q9NPE3 64 aaKnown RBP0.82□□□□□ -2.28
USP53-204ENST00000507906 TACC2O95359 2948 aa0.82□□□□□ -2.28
USP53-204ENST00000507906 OTOGQ6ZRI0 2925 aa0.82□□□□□ -2.28
USP53-204ENST00000507906 RIF1Q5UIP0 2472 aaKnown RBP0.82□□□□□ -2.28
USP53-204ENST00000507906 CCDC168Q8NDH2 2452 aa0.82□□□□□ -2.28
USP53-204ENST00000507906 LOC400499M0QZD8 3231 aa0.81□□□□□ -2.28
USP53-204ENST00000507906 ASH1LQ9NR48 2969 aaKnown RBP0.81□□□□□ -2.28
USP53-204ENST00000507906 ZFHX4Q86UP3 3567 aa0.81□□□□□ -2.28
USP53-204ENST00000507906 MAP1AP78559 2803 aaPredicted RBP0.81□□□□□ -2.28
USP53-204ENST00000507906 A0A1B0GU69 56 aa0.81□□□□□ -2.28
USP53-204ENST00000507906 H3BUX3 64 aa0.81□□□□□ -2.28
USP53-204ENST00000507906 ACYP2P14621 99 aa0.81□□□□□ -2.28
USP53-204ENST00000507906 SPRR1BP22528 89 aa0.81□□□□□ -2.28
USP53-204ENST00000507906 KRTAP19-3Q7Z4W3 81 aa0.81□□□□□ -2.28
USP53-204ENST00000507906 TP53AIP1Q9HCN2 124 aa0.81□□□□□ -2.28
USP53-204ENST00000507906 DOPEY1Q5JWR5 2465 aa0.81□□□□□ -2.28
USP53-204ENST00000507906 VPS13DQ5THJ4 4388 aa0.81□□□□□ -2.28
USP53-204ENST00000507906 PRRC2CQ9Y520 2896 aaKnown RBP0.81□□□□□ -2.28
USP53-204ENST00000507906 ANK3Q12955 4377 aaKnown RBP0.8□□□□□ -2.28
USP53-204ENST00000507906 DNAH1Q9P2D7 4330 aa0.8□□□□□ -2.28
USP53-204ENST00000507906 ATMQ13315 3056 aa0.8□□□□□ -2.28
USP53-204ENST00000507906 H0YAA0 97 aa0.8□□□□□ -2.28
USP53-204ENST00000507906 LELP1Q5T871 98 aa0.8□□□□□ -2.28
USP53-204ENST00000507906 CEP295Q9C0D2 2601 aa0.8□□□□□ -2.28
USP53-204ENST00000507906 COL12A1Q99715 3063 aa0.8□□□□□ -2.28
USP53-204ENST00000507906 SETXQ7Z333 2677 aaKnown RBP0.8□□□□□ -2.28
USP53-204ENST00000507906 SPENQ96T58 3664 aaKnown RBP0.79□□□□□ -2.28
USP53-204ENST00000507906 SONP18583 2426 aaKnown RBP0.79□□□□□ -2.28
USP53-204ENST00000507906 PKD1L2Q7Z442 2459 aa0.79□□□□□ -2.28
USP53-204ENST00000507906 ZFYVE26Q68DK2 2539 aa0.79□□□□□ -2.28
USP53-204ENST00000507906 USP9XQ93008 2570 aaPredicted RBP0.79□□□□□ -2.28
USP53-204ENST00000507906 MYO15AQ9UKN7 3530 aa0.79□□□□□ -2.28
USP53-204ENST00000507906 A0A096LPF7 62 aa0.79□□□□□ -2.28
USP53-204ENST00000507906 RPL37P61927 97 aaKnown RBP0.79□□□□□ -2.28
USP53-204ENST00000507906 MRPL34Q9BQ48 92 aaKnown RBP0.79□□□□□ -2.28
USP53-204ENST00000507906 PRO0255Q9UI72 69 aa0.79□□□□□ -2.28
USP53-204ENST00000507906 NAV2Q8IVL1 2488 aa0.79□□□□□ -2.28
USP53-204ENST00000507906 ZNF462Q96JM2 2506 aa0.79□□□□□ -2.28
USP53-204ENST00000507906 SMG1Q96Q15 3661 aaKnown RBP0.78□□□□□ -2.28
USP53-204ENST00000507906 TEX15Q9BXT5 2789 aa0.78□□□□□ -2.28
USP53-204ENST00000507906 LRBAP50851 2863 aa0.78□□□□□ -2.28
USP53-204ENST00000507906 DEFB130BP0DP73 79 aa0.78□□□□□ -2.28
USP53-204ENST00000507906 DEFB130AP0DP74 79 aa0.78□□□□□ -2.28
USP53-204ENST00000507906 CRIPTQ9P021 101 aa0.78□□□□□ -2.28
USP53-204ENST00000507906 AKAP9Q99996 3911 aa0.78□□□□□ -2.28
USP53-204ENST00000507906 BSNQ9UPA5 3926 aa0.78□□□□□ -2.28
USP53-204ENST00000507906 TTC28Q96AY4 2481 aa0.78□□□□□ -2.28
USP53-204ENST00000507906 ANKRD11Q6UB99 2663 aaPredicted RBP0.78□□□□□ -2.29
USP53-204ENST00000507906 LRRK2Q5S007 2527 aa0.77□□□□□ -2.29
USP53-204ENST00000507906 CELSR1Q9NYQ6 3014 aa0.77□□□□□ -2.29
USP53-204ENST00000507906 EYSQ5T1H1 3165 aa0.77□□□□□ -2.29
USP53-204ENST00000507906 MYO9AB2RTY4 2548 aa0.77□□□□□ -2.29
USP53-204ENST00000507906 CHD8Q9HCK8 2581 aa0.77□□□□□ -2.29
USP53-204ENST00000507906 ADGRG4Q8IZF6 3080 aa0.77□□□□□ -2.29
USP53-204ENST00000507906 DNAH8Q96JB1 4490 aa0.76□□□□□ -2.29
USP53-204ENST00000507906 RELNP78509 3460 aa0.76□□□□□ -2.29
USP53-204ENST00000507906 CRYBG3Q68DQ2 2970 aa0.76□□□□□ -2.29
USP53-204ENST00000507906 FBN2P35556 2912 aa0.76□□□□□ -2.29
USP53-204ENST00000507906 UTP20O75691 2785 aaKnown RBP0.76□□□□□ -2.29
USP53-204ENST00000507906 GCN1Q92616 2671 aaKnown RBP0.76□□□□□ -2.29
USP53-204ENST00000507906 MTORP42345 2549 aa0.76□□□□□ -2.29
USP53-204ENST00000507906 PIEZO1Q92508 2521 aa0.76□□□□□ -2.29
USP53-204ENST00000507906 PRLHP81277 87 aa0.76□□□□□ -2.29
USP53-204ENST00000507906 H1FX-AS1Q4G0G2 97 aa0.76□□□□□ -2.29
USP53-204ENST00000507906 SSBP3-AS1Q7Z2R9 100 aa0.76□□□□□ -2.29
USP53-204ENST00000507906 C10orf95Q9H7T3 257 aa0.76□□□□□ -2.29
USP53-204ENST00000507906 COL6A5A8TX70 2615 aa0.76□□□□□ -2.29
USP53-204ENST00000507906 UNC79Q9P2D8 2635 aa0.76□□□□□ -2.29
USP53-204ENST00000507906 NOTCH1P46531 2555 aa0.76□□□□□ -2.29
USP53-204ENST00000507906 NBPF19A0A087WUL8 3843 aa0.76□□□□□ -2.29
USP53-204ENST00000507906 LAMA5O15230 3695 aa0.76□□□□□ -2.29
USP53-204ENST00000507906 ACACBO00763 2458 aa0.75□□□□□ -2.29
USP53-204ENST00000507906 PRKDCP78527 4128 aaKnown RBP0.75□□□□□ -2.29
USP53-204ENST00000507906 H3BNG1 76 aa0.75□□□□□ -2.29
USP53-204ENST00000507906 LINC01556Q5JQF7 62 aa0.75□□□□□ -2.29
USP53-204ENST00000507906 ASPMQ8IZT6 3477 aa0.75□□□□□ -2.29
USP53-204ENST00000507906 DNAH2Q9P225 4427 aa0.75□□□□□ -2.29
USP53-204ENST00000507906 MEGF8Q7Z7M0 2845 aa0.74□□□□□ -2.29
USP53-204ENST00000507906 FRAS1Q86XX4 4008 aa0.74□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms