RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 A0A1B0GV90 55 aa5.59□□□□□ -1.51
NUP54-203ENST00000504173 TPRXLQ17RH7 258 aa5.59□□□□□ -1.51
NUP54-203ENST00000504173 A0A1B0GW54 56 aa5.57□□□□□ -1.52
NUP54-203ENST00000504173 KRTAP13-3Q3SY46 172 aa5.56□□□□□ -1.52
NUP54-203ENST00000504173 Q96NJ1 140 aa5.56□□□□□ -1.52
NUP54-203ENST00000504173 CDIP1Q9H305 208 aa5.56□□□□□ -1.52
NUP54-203ENST00000504173 ETDBQ3ZM63 59 aa5.55□□□□□ -1.52
NUP54-203ENST00000504173 SIGMAR1Q99720 223 aa5.54□□□□□ -1.52
NUP54-203ENST00000504173 LINC00472Q9H8W2 130 aa5.54□□□□□ -1.52
NUP54-203ENST00000504173 C9orf92A6NGG3 77 aa5.53□□□□□ -1.52
NUP54-203ENST00000504173 IGKV4-1P06312 121 aa5.53□□□□□ -1.52
NUP54-203ENST00000504173 DEFB116Q30KQ4 102 aa5.53□□□□□ -1.52
NUP54-203ENST00000504173 MUC17Q685J3 4493 aa5.52□□□□□ -1.53
NUP54-203ENST00000504173 NREPQ16612 68 aa5.51□□□□□ -1.53
NUP54-203ENST00000504173 J3KT08 172 aa5.49□□□□□ -1.53
NUP54-203ENST00000504173 KRTAP4-8Q9BYQ9 185 aa5.47□□□□□ -1.53
NUP54-203ENST00000504173 IGHV6-1A0A0B4J1U7 121 aa5.46□□□□□ -1.54
NUP54-203ENST00000504173 DSCR10P59022 87 aa5.46□□□□□ -1.54
NUP54-203ENST00000504173 Q6ZVQ6 151 aa5.46□□□□□ -1.54
NUP54-203ENST00000504173 UBL5Q9BZL1 73 aa5.46□□□□□ -1.54
NUP54-203ENST00000504173 LINC00846Q9NV44 126 aa5.46□□□□□ -1.54
NUP54-203ENST00000504173 NDUFB1O75438 58 aa5.45□□□□□ -1.54
NUP54-203ENST00000504173 A0A1B0GVX0 72 aa5.44□□□□□ -1.54
NUP54-203ENST00000504173 A8MWP4 228 aa5.44□□□□□ -1.54
NUP54-203ENST00000504173 BPY2O14599 106 aa5.44□□□□□ -1.54
NUP54-203ENST00000504173 LINC00313P59037 77 aa5.44□□□□□ -1.54
NUP54-203ENST00000504173 C8orf87E5RJ46 101 aa5.43□□□□□ -1.54
NUP54-203ENST00000504173 IGKV3D-7A0A0C4DH55 119 aa5.42□□□□□ -1.54
NUP54-203ENST00000504173 SEC61BP60468 96 aaKnown RBP5.42□□□□□ -1.54
NUP54-203ENST00000504173 ACYP1P07311 99 aa5.41□□□□□ -1.54
NUP54-203ENST00000504173 RPL37P61927 97 aaKnown RBP5.41□□□□□ -1.54
NUP54-203ENST00000504173 NOTCH2NLQ7Z3S9 236 aa5.41□□□□□ -1.54
NUP54-203ENST00000504173 FAM240AA0A1B0GVK7 77 aa5.4□□□□□ -1.54
NUP54-203ENST00000504173 SSPOA2VEC9 5147 aa5.39□□□□□ -1.55
NUP54-203ENST00000504173 K7EQZ3 153 aa5.39□□□□□ -1.55
NUP54-203ENST00000504173 Q75L30 129 aa5.39□□□□□ -1.55
NUP54-203ENST00000504173 PRR15Q8IV56 129 aa5.39□□□□□ -1.55
NUP54-203ENST00000504173 KRTAP16-1A8MUX0 517 aa5.38□□□□□ -1.55
NUP54-203ENST00000504173 C20orf166-AS1Q96NR2 134 aa5.38□□□□□ -1.55
NUP54-203ENST00000504173 C8orf17Q9NRJ1 99 aa5.38□□□□□ -1.55
NUP54-203ENST00000504173 J3QR89 54 aa5.37□□□□□ -1.55
NUP54-203ENST00000504173 PCOTHQ58A44 107 aa5.37□□□□□ -1.55
NUP54-203ENST00000504173 A8MUU9 505 aa5.36□□□□□ -1.55
NUP54-203ENST00000504173 Q8N9L7 120 aa5.36□□□□□ -1.55
NUP54-203ENST00000504173 CXCL6P80162 114 aa5.35□□□□□ -1.55
NUP54-203ENST00000504173 ATP11AUNQ6ZP68 121 aa5.35□□□□□ -1.55
NUP54-203ENST00000504173 MMP24-AS1A0A0U1RRL7 71 aa5.34□□□□□ -1.55
NUP54-203ENST00000504173 hDV103S1A0JD37 113 aa5.32□□□□□ -1.56
NUP54-203ENST00000504173 TMEM254Q8TBM7 123 aa5.32□□□□□ -1.56
NUP54-203ENST00000504173 ATP5EP2Q5VTU8 51 aa5.31□□□□□ -1.56
NUP54-203ENST00000504173 WFDC13Q8IUB5 93 aa5.31□□□□□ -1.56
NUP54-203ENST00000504173 MRPL34Q9BQ48 92 aaKnown RBP5.31□□□□□ -1.56
NUP54-203ENST00000504173 FCGBPQ9Y6R7 5405 aaPredicted RBP5.31□□□□□ -1.56
NUP54-203ENST00000504173 CASC2Q6XLA1 102 aa5.3□□□□□ -1.56
NUP54-203ENST00000504173 LINC00643Q86TS7 51 aa5.3□□□□□ -1.56
NUP54-203ENST00000504173 Q8N9P0 234 aaPredicted RBP5.3□□□□□ -1.56
NUP54-203ENST00000504173 USH2AO75445 5202 aa5.3□□□□□ -1.56
NUP54-203ENST00000504173 HCG22E2RYF7 251 aa5.29□□□□□ -1.56
NUP54-203ENST00000504173 KRTAP4-1Q9BYQ7 146 aa5.29□□□□□ -1.56
NUP54-203ENST00000504173 NDUFS5O43920 106 aa5.28□□□□□ -1.56
NUP54-203ENST00000504173 K7ERU9 68 aa5.27□□□□□ -1.57
NUP54-203ENST00000504173 HIST1H4AP62805 103 aaKnown RBP5.26□□□□□ -1.57
NUP54-203ENST00000504173 ZCCHC13Q8WW36 166 aaKnown RBP5.26□□□□□ -1.57
NUP54-203ENST00000504173 SYNE2Q8WXH0 6885 aaKnown RBP5.25□□□□□ -1.57
NUP54-203ENST00000504173 KRTAP10-6P60371 365 aaPredicted RBP5.25□□□□□ -1.57
NUP54-203ENST00000504173 MT1HP80294 61 aa5.25□□□□□ -1.57
NUP54-203ENST00000504173 LCE3BQ5TA77 95 aa5.24□□□□□ -1.57
NUP54-203ENST00000504173 MACF1Q9UPN3 7388 aaKnown RBP5.23□□□□□ -1.57
NUP54-203ENST00000504173 KRTAP4-12Q9BQ66 201 aa5.22□□□□□ -1.57
NUP54-203ENST00000504173 KRTAP19-2Q3LHN2 52 aa5.2□□□□□ -1.58
NUP54-203ENST00000504173 A0A087WVE0 104 aa5.19□□□□□ -1.58
NUP54-203ENST00000504173 Q5W150 140 aa5.17□□□□□ -1.58
NUP54-203ENST00000504173 TP53AIP1Q9HCN2 124 aa5.17□□□□□ -1.58
NUP54-203ENST00000504173 SPINK7P58062 85 aa5.16□□□□□ -1.58
NUP54-203ENST00000504173 MT-ATP8P03928 68 aa5.15□□□□□ -1.59
NUP54-203ENST00000504173 KRTAP19-1Q8IUB9 90 aa5.15□□□□□ -1.59
NUP54-203ENST00000504173 COX6B2Q6YFQ2 88 aa5.14□□□□□ -1.59
NUP54-203ENST00000504173 IGKV2D-30A0A075B6S6 120 aa5.13□□□□□ -1.59
NUP54-203ENST00000504173 IGKV2-30P06310 120 aa5.13□□□□□ -1.59
NUP54-203ENST00000504173 IMUPQ9GZP8 106 aa5.13□□□□□ -1.59
NUP54-203ENST00000504173 HRES1P13985 223 aa5.12□□□□□ -1.59
NUP54-203ENST00000504173 C7orf65Q6ZTY9 151 aa5.12□□□□□ -1.59
NUP54-203ENST00000504173 KRTAP9-9Q9BYP9 154 aa5.11□□□□□ -1.59
NUP54-203ENST00000504173 KRTAP9-4Q9BYQ2 154 aa5.11□□□□□ -1.59
NUP54-203ENST00000504173 RBM12B-AS1Q9P1G2 102 aa5.11□□□□□ -1.59
NUP54-203ENST00000504173 UQCRQO14949 82 aa5.1□□□□□ -1.59
NUP54-203ENST00000504173 FAM236DA0A1B0GTK5 79 aa5.09□□□□□ -1.59
NUP54-203ENST00000504173 FAM236CP0DP71 79 aa5.09□□□□□ -1.59
NUP54-203ENST00000504173 SCGB1A1P11684 91 aa5.09□□□□□ -1.59
NUP54-203ENST00000504173 TRAV22A0A0B4J277 110 aa5.08□□□□□ -1.6
NUP54-203ENST00000504173 MPLKIPQ8TAP9 179 aa5.08□□□□□ -1.6
NUP54-203ENST00000504173 KRTAP6-3Q3LI67 103 aa5.07□□□□□ -1.6
NUP54-203ENST00000504173 H0Y9P7 68 aa5.06□□□□□ -1.6
NUP54-203ENST00000504173 OCR1Q9BZK8 76 aa5.06□□□□□ -1.6
NUP54-203ENST00000504173 FAM236AA0A1B0GUQ0 79 aa5.05□□□□□ -1.6
NUP54-203ENST00000504173 FAM236BA0A1B0GV22 79 aa5.05□□□□□ -1.6
NUP54-203ENST00000504173 ATOX1O00244 68 aa5.05□□□□□ -1.6
NUP54-203ENST00000504173 NEBP20929 6669 aa5.05□□□□□ -1.6
NUP54-203ENST00000504173 LOC101927531A0A1B0GV80 90 aa5.03□□□□□ -1.6
NUP54-203ENST00000504173 M0R2T5 61 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 107.5 ms