RNA–Protein interactions for RNA: ENST00000503742.5

UBE2D3-216, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 1 (best)

Gene UBE2D3, Length 1,977 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-216ENST00000503742 SPINK6Q6UWN8 80 aa12.43□□□□□ -0.42
UBE2D3-216ENST00000503742 ASB16-AS1Q495Z4 193 aa12.42□□□□□ -0.42
UBE2D3-216ENST00000503742 A0A1B0GVX0 72 aa12.4□□□□□ -0.42
UBE2D3-216ENST00000503742 SMR3BP02814 79 aaPredicted RBP12.39□□□□□ -0.43
UBE2D3-216ENST00000503742 ZCCHC13Q8WW36 166 aaKnown RBP12.39□□□□□ -0.43
UBE2D3-216ENST00000503742 PLA2G1BP04054 148 aaKnown RBP12.39□□□□□ -0.43
UBE2D3-216ENST00000503742 CDK2AP2O75956 126 aa12.37□□□□□ -0.43
UBE2D3-216ENST00000503742 C8orf17Q9NRJ1 99 aa12.37□□□□□ -0.43
UBE2D3-216ENST00000503742 hDV103S1A0JD37 113 aa12.36□□□□□ -0.43
UBE2D3-216ENST00000503742 FAT1Q14517 4588 aa12.35□□□□□ -0.43
UBE2D3-216ENST00000503742 KRTAP10-4P60372 401 aaPredicted RBP12.35□□□□□ -0.43
UBE2D3-216ENST00000503742 IGHV6-1A0A0B4J1U7 121 aa12.34□□□□□ -0.43
UBE2D3-216ENST00000503742 TYMSOSQ8TAI1 123 aa12.3□□□□□ -0.44
UBE2D3-216ENST00000503742 PRO0628Q9UI54 55 aa12.29□□□□□ -0.44
UBE2D3-216ENST00000503742 NOTCH2NLQ7Z3S9 236 aa12.29□□□□□ -0.44
UBE2D3-216ENST00000503742 MP68P56378 58 aa12.27□□□□□ -0.45
UBE2D3-216ENST00000503742 C1orf195Q5TG92 126 aa12.27□□□□□ -0.45
UBE2D3-216ENST00000503742 RYR3Q15413 4870 aa12.26□□□□□ -0.45
UBE2D3-216ENST00000503742 CYP4F30PQ9H0H9 118 aa12.25□□□□□ -0.45
UBE2D3-216ENST00000503742 LIMD2Q9BT23 127 aa12.25□□□□□ -0.45
UBE2D3-216ENST00000503742 PRR26Q8N8Z3 221 aa12.24□□□□□ -0.45
UBE2D3-216ENST00000503742 H3BPC8 53 aa12.23□□□□□ -0.45
UBE2D3-216ENST00000503742 MRPL34Q9BQ48 92 aaKnown RBP12.23□□□□□ -0.45
UBE2D3-216ENST00000503742 C4orf48Q5BLP8 95 aa12.22□□□□□ -0.45
UBE2D3-216ENST00000503742 SPINK1P00995 79 aa12.21□□□□□ -0.45
UBE2D3-216ENST00000503742 PKHD1L1Q86WI1 4243 aa12.2□□□□□ -0.46
UBE2D3-216ENST00000503742 H0Y9P7 68 aa12.2□□□□□ -0.46
UBE2D3-216ENST00000503742 TP53AIP1Q9HCN2 124 aa12.2□□□□□ -0.46
UBE2D3-216ENST00000503742 C8orf87E5RJ46 101 aa12.18□□□□□ -0.46
UBE2D3-216ENST00000503742 C1orf64Q8NEQ6 169 aa12.18□□□□□ -0.46
UBE2D3-216ENST00000503742 MPLKIPQ8TAP9 179 aa12.18□□□□□ -0.46
UBE2D3-216ENST00000503742 TRAV22A0A0B4J277 110 aa12.17□□□□□ -0.46
UBE2D3-216ENST00000503742 LINC00304Q8N9R0 145 aa12.16□□□□□ -0.46
UBE2D3-216ENST00000503742 LINC00208Q96KT6 92 aa12.16□□□□□ -0.46
UBE2D3-216ENST00000503742 RPS29P62273 56 aaKnown RBP12.14□□□□□ -0.47
UBE2D3-216ENST00000503742 Q1T7F1 81 aa12.13□□□□□ -0.47
UBE2D3-216ENST00000503742 SPANXA2-OT1Q8N9U9 137 aa12.13□□□□□ -0.47
UBE2D3-216ENST00000503742 SPAG11AQ6PDA7 123 aa12.12□□□□□ -0.47
UBE2D3-216ENST00000503742 HSPG2P98160 4391 aa12.12□□□□□ -0.47
UBE2D3-216ENST00000503742 NDUFS5O43920 106 aa12.12□□□□□ -0.47
UBE2D3-216ENST00000503742 LINC00313P59037 77 aa12.1□□□□□ -0.47
UBE2D3-216ENST00000503742 FAM229AH3BQW9 127 aa12.06□□□□□ -0.48
UBE2D3-216ENST00000503742 BRK1Q8WUW1 75 aa12.06□□□□□ -0.48
UBE2D3-216ENST00000503742 V9GYY9 64 aa12.03□□□□□ -0.48
UBE2D3-216ENST00000503742 RYR1P21817 5038 aa12.03□□□□□ -0.48
UBE2D3-216ENST00000503742 KRTAP16-1A8MUX0 517 aa12.02□□□□□ -0.49
UBE2D3-216ENST00000503742 Q8N9P0 234 aaPredicted RBP12.01□□□□□ -0.49
UBE2D3-216ENST00000503742 KRTAP13-3Q3SY46 172 aa12□□□□□ -0.49
UBE2D3-216ENST00000503742 PRR4Q16378 134 aa11.99□□□□□ -0.49
UBE2D3-216ENST00000503742 Q5VSD8 79 aa11.98□□□□□ -0.49
UBE2D3-216ENST00000503742 Q5W150 140 aa11.98□□□□□ -0.49
UBE2D3-216ENST00000503742 TNXBP22105 4242 aa11.92□□□□□ -0.5
UBE2D3-216ENST00000503742 KRTAP17-1Q9BYP8 105 aa11.89□□□□□ -0.51
UBE2D3-216ENST00000503742 IGLV7-46A0A075B6I9 117 aa11.88□□□□□ -0.51
UBE2D3-216ENST00000503742 LOC101927531A0A1B0GV80 90 aa11.88□□□□□ -0.51
UBE2D3-216ENST00000503742 LRP1Q07954 4544 aaKnown RBP11.87□□□□□ -0.51
UBE2D3-216ENST00000503742 PCOTHQ58A44 107 aa11.86□□□□□ -0.51
UBE2D3-216ENST00000503742 KRTAP10-8P60410 259 aa11.85□□□□□ -0.51
UBE2D3-216ENST00000503742 PSPHP1O15172 72 aa11.83□□□□□ -0.52
UBE2D3-216ENST00000503742 KIAA1109Q2LD37 5005 aa11.82□□□□□ -0.52
UBE2D3-216ENST00000503742 FAT3Q8TDW7 4589 aa11.82□□□□□ -0.52
UBE2D3-216ENST00000503742 Q8N1X5 172 aa11.81□□□□□ -0.52
UBE2D3-216ENST00000503742 FLG2Q5D862 2391 aaPredicted RBP11.8□□□□□ -0.52
UBE2D3-216ENST00000503742 EPPK1P58107 5090 aaKnown RBP11.79□□□□□ -0.52
UBE2D3-216ENST00000503742 RETNLBQ9BQ08 111 aa11.78□□□□□ -0.52
UBE2D3-216ENST00000503742 A8MUN3 132 aa11.76□□□□□ -0.53
UBE2D3-216ENST00000503742 COA5Q86WW8 74 aa11.76□□□□□ -0.53
UBE2D3-216ENST00000503742 Q5VV11 94 aa11.74□□□□□ -0.53
UBE2D3-216ENST00000503742 IGKV2-30P06310 120 aa11.73□□□□□ -0.53
UBE2D3-216ENST00000503742 C9orf92A6NGG3 77 aa11.69□□□□□ -0.54
UBE2D3-216ENST00000503742 C20orf166-AS1Q96NR2 134 aa11.67□□□□□ -0.54
UBE2D3-216ENST00000503742 A8MUU9 505 aa11.67□□□□□ -0.54
UBE2D3-216ENST00000503742 PRR15LQ9BU68 103 aa11.65□□□□□ -0.54
UBE2D3-216ENST00000503742 Q75L30 129 aa11.65□□□□□ -0.55
UBE2D3-216ENST00000503742 CHKB-CPT1BH3BT56 60 aa11.62□□□□□ -0.55
UBE2D3-216ENST00000503742 HRES1P13985 223 aa11.62□□□□□ -0.55
UBE2D3-216ENST00000503742 MT1HL1P0DM35 61 aa11.61□□□□□ -0.55
UBE2D3-216ENST00000503742 MYCBP2O75592 4640 aa11.6□□□□□ -0.55
UBE2D3-216ENST00000503742 IGKV2D-30A0A075B6S6 120 aa11.59□□□□□ -0.55
UBE2D3-216ENST00000503742 LINC01558Q9Y6Z2 57 aa11.58□□□□□ -0.56
UBE2D3-216ENST00000503742 DMBT1Q9UGM3 2413 aaPredicted RBP11.54□□□□□ -0.56
UBE2D3-216ENST00000503742 C7orf65Q6ZTY9 151 aa11.51□□□□□ -0.57
UBE2D3-216ENST00000503742 DMAC1Q96GE9 116 aa11.51□□□□□ -0.57
UBE2D3-216ENST00000503742 PMAIP1Q13794 54 aa11.5□□□□□ -0.57
UBE2D3-216ENST00000503742 A6NED7 52 aa11.48□□□□□ -0.57
UBE2D3-216ENST00000503742 ACYP2P14621 99 aa11.46□□□□□ -0.58
UBE2D3-216ENST00000503742 ATP11AUNQ6ZP68 121 aa11.45□□□□□ -0.58
UBE2D3-216ENST00000503742 KRTAP4-5Q9BYR2 181 aa11.44□□□□□ -0.58
UBE2D3-216ENST00000503742 CDC42SE1Q9NRR8 79 aa11.44□□□□□ -0.58
UBE2D3-216ENST00000503742 A8MU10 97 aa11.4□□□□□ -0.58
UBE2D3-216ENST00000503742 LCA10Q71F78 164 aa11.4□□□□□ -0.58
UBE2D3-216ENST00000503742 XP32Q5T750 250 aa11.34□□□□□ -0.59
UBE2D3-216ENST00000503742 SPINK7P58062 85 aa11.32□□□□□ -0.6
UBE2D3-216ENST00000503742 RPL37P61927 97 aaKnown RBP11.32□□□□□ -0.6
UBE2D3-216ENST00000503742 SPTSSBQ8NFR3 76 aa11.3□□□□□ -0.6
UBE2D3-216ENST00000503742 KTN1-AS1Q86SY8 53 aa11.25□□□□□ -0.61
UBE2D3-216ENST00000503742 A6NN06 94 aa11.23□□□□□ -0.61
UBE2D3-216ENST00000503742 BIRC6Q9NR09 4857 aa11.23□□□□□ -0.61
UBE2D3-216ENST00000503742 ABCA13Q86UQ4 5058 aa11.21□□□□□ -0.61
UBE2D3-216ENST00000503742 SEC61GP60059 68 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms