RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 PKHD1P08F94 4074 aa9.75□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 H0Y9P7 68 aa9.74□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 MMP24-AS1A0A0U1RRL7 71 aa9.73□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 LOC101927531A0A1B0GV80 90 aa9.73□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 Q96NJ1 140 aa9.73□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 PRR15LQ9BU68 103 aa9.73□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 CDC42SE1Q9NRR8 79 aa9.73□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 SPANXA2-OT1Q8N9U9 137 aa9.72□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 DNAH17Q9UFH2 4485 aa9.72□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 Q6ZR54 194 aa9.72□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 A0A087WTM6 91 aa9.71□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 IGLV9-49A0A0B4J1Y8 123 aa9.71□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 LINC00483Q53H64 154 aa9.71□□□□□ -0.85
MSH5-SAPCD1-208ENST00000498473 DNAH8Q96JB1 4490 aa9.7□□□□□ -0.86
MSH5-SAPCD1-208ENST00000498473 H3BPC8 53 aa9.7□□□□□ -0.86
MSH5-SAPCD1-208ENST00000498473 A6NED7 52 aa9.7□□□□□ -0.86
MSH5-SAPCD1-208ENST00000498473 PKD1P98161 4303 aa9.68□□□□□ -0.86
MSH5-SAPCD1-208ENST00000498473 DNAH11Q96DT5 4516 aa9.67□□□□□ -0.86
MSH5-SAPCD1-208ENST00000498473 MOBPQ13875 183 aa9.66□□□□□ -0.86
MSH5-SAPCD1-208ENST00000498473 ASB16-AS1Q495Z4 193 aa9.66□□□□□ -0.86
MSH5-SAPCD1-208ENST00000498473 C1orf134Q5TEV5 83 aa9.66□□□□□ -0.86
MSH5-SAPCD1-208ENST00000498473 RTL8CO15255 209 aa9.66□□□□□ -0.86
MSH5-SAPCD1-208ENST00000498473 PSORS1C2Q9UIG4 136 aa9.65□□□□□ -0.86
MSH5-SAPCD1-208ENST00000498473 IGLV5-52A0A0A0MRZ9 124 aa9.64□□□□□ -0.87
MSH5-SAPCD1-208ENST00000498473 DNAH5Q8TE73 4624 aa9.63□□□□□ -0.87
MSH5-SAPCD1-208ENST00000498473 H3BS24 57 aa9.63□□□□□ -0.87
MSH5-SAPCD1-208ENST00000498473 ZNF706Q9Y5V0 76 aaPredicted RBP9.62□□□□□ -0.87
MSH5-SAPCD1-208ENST00000498473 ANAPC11Q9NYG5 84 aa9.61□□□□□ -0.87
MSH5-SAPCD1-208ENST00000498473 PLAC8Q9NZF1 115 aa9.61□□□□□ -0.87
MSH5-SAPCD1-208ENST00000498473 C8orf17Q9NRJ1 99 aa9.6□□□□□ -0.87
MSH5-SAPCD1-208ENST00000498473 EPPK1P58107 5090 aaKnown RBP9.59□□□□□ -0.87
MSH5-SAPCD1-208ENST00000498473 ZNF861PO60384 105 aa9.59□□□□□ -0.87
MSH5-SAPCD1-208ENST00000498473 A0A1B0GVX0 72 aa9.56□□□□□ -0.88
MSH5-SAPCD1-208ENST00000498473 KRTAP10-2P60368 255 aa9.55□□□□□ -0.88
MSH5-SAPCD1-208ENST00000498473 TP53AIP1Q9HCN2 124 aa9.55□□□□□ -0.88
MSH5-SAPCD1-208ENST00000498473 IGHV6-1A0A0B4J1U7 121 aa9.54□□□□□ -0.88
MSH5-SAPCD1-208ENST00000498473 IGLV7-46A0A075B6I9 117 aa9.52□□□□□ -0.88
MSH5-SAPCD1-208ENST00000498473 LINC01558Q9Y6Z2 57 aa9.52□□□□□ -0.88
MSH5-SAPCD1-208ENST00000498473 A0A087X002 238 aa9.52□□□□□ -0.89
MSH5-SAPCD1-208ENST00000498473 NOTCH2NLQ7Z3S9 236 aa9.52□□□□□ -0.89
MSH5-SAPCD1-208ENST00000498473 COA5Q86WW8 74 aa9.5□□□□□ -0.89
MSH5-SAPCD1-208ENST00000498473 PCOTHQ58A44 107 aa9.49□□□□□ -0.89
MSH5-SAPCD1-208ENST00000498473 MRPL34Q9BQ48 92 aaKnown RBP9.48□□□□□ -0.89
MSH5-SAPCD1-208ENST00000498473 LRP1BQ9NZR2 4599 aa9.48□□□□□ -0.89
MSH5-SAPCD1-208ENST00000498473 CDK2AP2O75956 126 aa9.47□□□□□ -0.89
MSH5-SAPCD1-208ENST00000498473 IGLV7-43P04211 117 aa9.47□□□□□ -0.89
MSH5-SAPCD1-208ENST00000498473 LINC01554Q52M75 96 aa9.47□□□□□ -0.89
MSH5-SAPCD1-208ENST00000498473 DYNC1H1Q14204 4646 aaKnown RBP9.46□□□□□ -0.9
MSH5-SAPCD1-208ENST00000498473 LINC00313P59037 77 aa9.46□□□□□ -0.9
MSH5-SAPCD1-208ENST00000498473 PLA2G1BP04054 148 aaKnown RBP9.4□□□□□ -0.9
MSH5-SAPCD1-208ENST00000498473 SPINK6Q6UWN8 80 aa9.4□□□□□ -0.91
MSH5-SAPCD1-208ENST00000498473 CIRBP-AS1Q8TBR5 109 aa9.4□□□□□ -0.91
MSH5-SAPCD1-208ENST00000498473 PRR26Q8N8Z3 221 aa9.39□□□□□ -0.91
MSH5-SAPCD1-208ENST00000498473 A0A1B0GVY2 172 aa9.38□□□□□ -0.91
MSH5-SAPCD1-208ENST00000498473 SPINK7P58062 85 aa9.37□□□□□ -0.91
MSH5-SAPCD1-208ENST00000498473 KRTAP10-1P60331 282 aa9.37□□□□□ -0.91
MSH5-SAPCD1-208ENST00000498473 Q5W150 140 aa9.37□□□□□ -0.91
MSH5-SAPCD1-208ENST00000498473 KRTAP13-3Q3SY46 172 aa9.37□□□□□ -0.91
MSH5-SAPCD1-208ENST00000498473 SSBP3-AS1Q7Z2R9 100 aa9.35□□□□□ -0.91
MSH5-SAPCD1-208ENST00000498473 SPAG11AQ6PDA7 123 aa9.35□□□□□ -0.91
MSH5-SAPCD1-208ENST00000498473 KIAA1109Q2LD37 5005 aa9.34□□□□□ -0.91
MSH5-SAPCD1-208ENST00000498473 PRAC1Q96KF2 57 aa9.34□□□□□ -0.91
MSH5-SAPCD1-208ENST00000498473 APOBP04114 4563 aaKnown RBP9.33□□□□□ -0.92
MSH5-SAPCD1-208ENST00000498473 HRES1P13985 223 aa9.32□□□□□ -0.92
MSH5-SAPCD1-208ENST00000498473 FAT1Q14517 4588 aa9.3□□□□□ -0.92
MSH5-SAPCD1-208ENST00000498473 VPS13BQ7Z7G8 4022 aa9.28□□□□□ -0.92
MSH5-SAPCD1-208ENST00000498473 KRTAP13-2Q52LG2 175 aa9.28□□□□□ -0.92
MSH5-SAPCD1-208ENST00000498473 Q6ZSA8 131 aa9.24□□□□□ -0.93
MSH5-SAPCD1-208ENST00000498473 SMR3BP02814 79 aaPredicted RBP9.23□□□□□ -0.93
MSH5-SAPCD1-208ENST00000498473 HSPG2P98160 4391 aa9.23□□□□□ -0.93
MSH5-SAPCD1-208ENST00000498473 ADM2Q7Z4H4 148 aa9.22□□□□□ -0.93
MSH5-SAPCD1-208ENST00000498473 RYR1P21817 5038 aa9.19□□□□□ -0.94
MSH5-SAPCD1-208ENST00000498473 KRTAP1-4P0C5Y4 121 aa9.17□□□□□ -0.94
MSH5-SAPCD1-208ENST00000498473 KRTAP16-1A8MUX0 517 aa9.16□□□□□ -0.94
MSH5-SAPCD1-208ENST00000498473 KRTAP17-1Q9BYP8 105 aa9.16□□□□□ -0.94
MSH5-SAPCD1-208ENST00000498473 FAM229AH3BQW9 127 aa9.15□□□□□ -0.94
MSH5-SAPCD1-208ENST00000498473 RETNLBQ9BQ08 111 aa9.15□□□□□ -0.95
MSH5-SAPCD1-208ENST00000498473 ACYP2P14621 99 aa9.13□□□□□ -0.95
MSH5-SAPCD1-208ENST00000498473 IGKV2-30P06310 120 aa9.12□□□□□ -0.95
MSH5-SAPCD1-208ENST00000498473 DMAC1Q96GE9 116 aa9.12□□□□□ -0.95
MSH5-SAPCD1-208ENST00000498473 BIRC6Q9NR09 4857 aa9.11□□□□□ -0.95
MSH5-SAPCD1-208ENST00000498473 SPATA8Q6RVD6 105 aa9.09□□□□□ -0.95
MSH5-SAPCD1-208ENST00000498473 FLG2Q5D862 2391 aaPredicted RBP9.05□□□□□ -0.96
MSH5-SAPCD1-208ENST00000498473 MYCBP2O75592 4640 aa9.03□□□□□ -0.96
MSH5-SAPCD1-208ENST00000498473 CSAG1Q6PB30 78 aa9.03□□□□□ -0.96
MSH5-SAPCD1-208ENST00000498473 TYMSOSQ8TAI1 123 aa9□□□□□ -0.97
MSH5-SAPCD1-208ENST00000498473 LRP1Q07954 4544 aaKnown RBP8.99□□□□□ -0.97
MSH5-SAPCD1-208ENST00000498473 ABCA13Q86UQ4 5058 aa8.98□□□□□ -0.97
MSH5-SAPCD1-208ENST00000498473 KRTAP4-5Q9BYR2 181 aa8.98□□□□□ -0.97
MSH5-SAPCD1-208ENST00000498473 SPINK1P00995 79 aa8.97□□□□□ -0.97
MSH5-SAPCD1-208ENST00000498473 IGKV2D-30A0A075B6S6 120 aa8.96□□□□□ -0.97
MSH5-SAPCD1-208ENST00000498473 MIR22HGQ0VDD5 57 aa8.95□□□□□ -0.98
MSH5-SAPCD1-208ENST00000498473 Q5VSD8 79 aa8.95□□□□□ -0.98
MSH5-SAPCD1-208ENST00000498473 A0A1B0GU69 56 aa8.94□□□□□ -0.98
MSH5-SAPCD1-208ENST00000498473 UQCR11O14957 56 aa8.93□□□□□ -0.98
MSH5-SAPCD1-208ENST00000498473 HERC2O95714 4834 aa8.92□□□□□ -0.98
MSH5-SAPCD1-208ENST00000498473 KRTAP10-4P60372 401 aaPredicted RBP8.91□□□□□ -0.98
MSH5-SAPCD1-208ENST00000498473 PCLOQ9Y6V0 5065 aa8.89□□□□□ -0.99
MSH5-SAPCD1-208ENST00000498473 LINC00304Q8N9R0 145 aa8.88□□□□□ -0.99
MSH5-SAPCD1-208ENST00000498473 RPS29P62273 56 aaKnown RBP8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms