RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 SPCS1Q9Y6A9 102 aa8.43□□□□□ -1.06
LIME1-209ENST00000494776 J3KT08 172 aa8.42□□□□□ -1.06
LIME1-209ENST00000494776 KRTAP9-2Q9BYQ4 174 aa8.42□□□□□ -1.06
LIME1-209ENST00000494776 A8MUU9 505 aa8.41□□□□□ -1.06
LIME1-209ENST00000494776 A0A1B0GVX0 72 aa8.38□□□□□ -1.07
LIME1-209ENST00000494776 PCP4L1A6NKN8 68 aa8.38□□□□□ -1.07
LIME1-209ENST00000494776 NDUFB1O75438 58 aa8.38□□□□□ -1.07
LIME1-209ENST00000494776 NOTCH2NLQ7Z3S9 236 aa8.38□□□□□ -1.07
LIME1-209ENST00000494776 C8orf87E5RJ46 101 aa8.37□□□□□ -1.07
LIME1-209ENST00000494776 NREPQ16612 68 aa8.35□□□□□ -1.07
LIME1-209ENST00000494776 KRTAP16-1A8MUX0 517 aa8.34□□□□□ -1.07
LIME1-209ENST00000494776 COX6B2Q6YFQ2 88 aa8.33□□□□□ -1.08
LIME1-209ENST00000494776 A8MWP4 228 aa8.31□□□□□ -1.08
LIME1-209ENST00000494776 KRTAP19-2Q3LHN2 52 aa8.31□□□□□ -1.08
LIME1-209ENST00000494776 LCE2CQ5TA81 110 aa8.31□□□□□ -1.08
LIME1-209ENST00000494776 K7EP34 96 aa8.3□□□□□ -1.08
LIME1-209ENST00000494776 SMCPP49901 116 aaPredicted RBP8.28□□□□□ -1.08
LIME1-209ENST00000494776 IGKV3D-7A0A0C4DH55 119 aa8.26□□□□□ -1.09
LIME1-209ENST00000494776 GTF2H5Q6ZYL4 71 aa8.26□□□□□ -1.09
LIME1-209ENST00000494776 C8orf17Q9NRJ1 99 aa8.26□□□□□ -1.09
LIME1-209ENST00000494776 MT1HP80294 61 aa8.24□□□□□ -1.09
LIME1-209ENST00000494776 PRO0461Q9UI25 63 aa8.24□□□□□ -1.09
LIME1-209ENST00000494776 PRR15Q8IV56 129 aa8.23□□□□□ -1.09
LIME1-209ENST00000494776 BPY2O14599 106 aa8.21□□□□□ -1.1
LIME1-209ENST00000494776 M0R2T5 61 aa8.2□□□□□ -1.1
LIME1-209ENST00000494776 Q6ZVQ6 151 aa8.2□□□□□ -1.1
LIME1-209ENST00000494776 KRTAP9-6A0A140TA67 174 aa8.18□□□□□ -1.1
LIME1-209ENST00000494776 Q8N9P0 234 aaPredicted RBP8.18□□□□□ -1.1
LIME1-209ENST00000494776 ZCCHC13Q8WW36 166 aaKnown RBP8.18□□□□□ -1.1
LIME1-209ENST00000494776 F8W1H4 67 aa8.17□□□□□ -1.1
LIME1-209ENST00000494776 K7EQZ3 153 aa8.17□□□□□ -1.1
LIME1-209ENST00000494776 MMP24-AS1A0A0U1RRL7 71 aa8.14□□□□□ -1.11
LIME1-209ENST00000494776 TMEM254Q8TBM7 123 aa8.14□□□□□ -1.11
LIME1-209ENST00000494776 UBL5Q9BZL1 73 aa8.14□□□□□ -1.11
LIME1-209ENST00000494776 FAM236DA0A1B0GTK5 79 aa8.13□□□□□ -1.11
LIME1-209ENST00000494776 hDV103S1A0JD37 113 aa8.13□□□□□ -1.11
LIME1-209ENST00000494776 FAM236CP0DP71 79 aa8.13□□□□□ -1.11
LIME1-209ENST00000494776 LCE2DQ5TA82 110 aaPredicted RBP8.13□□□□□ -1.11
LIME1-209ENST00000494776 MRPL34Q9BQ48 92 aaKnown RBP8.13□□□□□ -1.11
LIME1-209ENST00000494776 LINC00846Q9NV44 126 aa8.12□□□□□ -1.11
LIME1-209ENST00000494776 RBM12B-AS1Q9P1G2 102 aa8.12□□□□□ -1.11
LIME1-209ENST00000494776 NDUFS5O43920 106 aa8.11□□□□□ -1.11
LIME1-209ENST00000494776 ETDBQ3ZM63 59 aa8.1□□□□□ -1.11
LIME1-209ENST00000494776 Q8N9L7 120 aa8.09□□□□□ -1.11
LIME1-209ENST00000494776 HRES1P13985 223 aa8.08□□□□□ -1.12
LIME1-209ENST00000494776 SPINK7P58062 85 aa8.08□□□□□ -1.12
LIME1-209ENST00000494776 FSIP2Q5CZC0 6907 aa8.08□□□□□ -1.12
LIME1-209ENST00000494776 KRTAP10-6P60371 365 aaPredicted RBP8.06□□□□□ -1.12
LIME1-209ENST00000494776 WFDC13Q8IUB5 93 aa8.06□□□□□ -1.12
LIME1-209ENST00000494776 CASC2Q6XLA1 102 aa8.05□□□□□ -1.12
LIME1-209ENST00000494776 LORP23490 312 aaPredicted RBP8.02□□□□□ -1.13
LIME1-209ENST00000494776 MPLKIPQ8TAP9 179 aa8.02□□□□□ -1.13
LIME1-209ENST00000494776 FLGP20930 4061 aaPredicted RBP8□□□□□ -1.13
LIME1-209ENST00000494776 HCG22E2RYF7 251 aa7.99□□□□□ -1.13
LIME1-209ENST00000494776 CRCT1Q9UGL9 99 aa7.96□□□□□ -1.14
LIME1-209ENST00000494776 CXCL6P80162 114 aa7.95□□□□□ -1.14
LIME1-209ENST00000494776 ACYP1P07311 99 aa7.93□□□□□ -1.14
LIME1-209ENST00000494776 Q5W150 140 aa7.93□□□□□ -1.14
LIME1-209ENST00000494776 IGKV2D-30A0A075B6S6 120 aa7.92□□□□□ -1.14
LIME1-209ENST00000494776 IGKV2-30P06310 120 aa7.92□□□□□ -1.14
LIME1-209ENST00000494776 A0A1B0GV90 55 aa7.89□□□□□ -1.15
LIME1-209ENST00000494776 C7orf65Q6ZTY9 151 aa7.89□□□□□ -1.15
LIME1-209ENST00000494776 FAM240AA0A1B0GVK7 77 aa7.87□□□□□ -1.15
LIME1-209ENST00000494776 TP53AIP1Q9HCN2 124 aa7.83□□□□□ -1.16
LIME1-209ENST00000494776 ATP5EP2Q5VTU8 51 aa7.82□□□□□ -1.16
LIME1-209ENST00000494776 KRTAP9-8Q9BYQ0 159 aa7.8□□□□□ -1.16
LIME1-209ENST00000494776 HIST1H4AP62805 103 aaKnown RBP7.79□□□□□ -1.16
LIME1-209ENST00000494776 H1FX-AS1Q4G0G2 97 aa7.78□□□□□ -1.16
LIME1-209ENST00000494776 C4orf26Q17RF5 130 aa7.75□□□□□ -1.17
LIME1-209ENST00000494776 LINC00643Q86TS7 51 aa7.74□□□□□ -1.17
LIME1-209ENST00000494776 MT2AP02795 61 aa7.72□□□□□ -1.17
LIME1-209ENST00000494776 J3QR89 54 aa7.7□□□□□ -1.18
LIME1-209ENST00000494776 KRTAP10-10P60014 251 aa7.7□□□□□ -1.18
LIME1-209ENST00000494776 TRAV22A0A0B4J277 110 aa7.67□□□□□ -1.18
LIME1-209ENST00000494776 A0A087WVE0 104 aa7.66□□□□□ -1.18
LIME1-209ENST00000494776 MT1FP04733 61 aa7.66□□□□□ -1.18
LIME1-209ENST00000494776 UQCRQO14949 82 aa7.64□□□□□ -1.19
LIME1-209ENST00000494776 C1orf64Q8NEQ6 169 aa7.64□□□□□ -1.19
LIME1-209ENST00000494776 CYP4F30PQ9H0H9 118 aa7.62□□□□□ -1.19
LIME1-209ENST00000494776 LOC101927531A0A1B0GV80 90 aa7.61□□□□□ -1.19
LIME1-209ENST00000494776 USH2AO75445 5202 aa7.59□□□□□ -1.19
LIME1-209ENST00000494776 H0Y9P7 68 aa7.59□□□□□ -1.19
LIME1-209ENST00000494776 ATOX1O00244 68 aa7.58□□□□□ -1.2
LIME1-209ENST00000494776 KRTAP3-1Q9BYR8 98 aa7.58□□□□□ -1.2
LIME1-209ENST00000494776 S4R3F8 94 aa7.57□□□□□ -1.2
LIME1-209ENST00000494776 KRTAP9-3Q9BYQ3 159 aa7.55□□□□□ -1.2
LIME1-209ENST00000494776 C5orf47Q569G3 176 aa7.54□□□□□ -1.2
LIME1-209ENST00000494776 SSPOA2VEC9 5147 aa7.52□□□□□ -1.21
LIME1-209ENST00000494776 MP68P56378 58 aa7.49□□□□□ -1.21
LIME1-209ENST00000494776 CSAG1Q6PB30 78 aa7.49□□□□□ -1.21
LIME1-209ENST00000494776 LCA10Q71F78 164 aa7.49□□□□□ -1.21
LIME1-209ENST00000494776 LINC00208Q96KT6 92 aa7.49□□□□□ -1.21
LIME1-209ENST00000494776 LCE2BO14633 110 aa7.48□□□□□ -1.21
LIME1-209ENST00000494776 SCGB1A1P11684 91 aa7.48□□□□□ -1.21
LIME1-209ENST00000494776 OCR1Q9BZK8 76 aa7.48□□□□□ -1.21
LIME1-209ENST00000494776 K7ERU9 68 aa7.46□□□□□ -1.22
LIME1-209ENST00000494776 FAM236AA0A1B0GUQ0 79 aa7.43□□□□□ -1.22
LIME1-209ENST00000494776 FAM236BA0A1B0GV22 79 aa7.43□□□□□ -1.22
LIME1-209ENST00000494776 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.39□□□□□ -1.23
LIME1-209ENST00000494776 KLKP1Q107X0 134 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms