RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 IGKV4-1P06312 121 aa5.49□□□□□ -1.53
USP54-214ENST00000492357 DSCR10P59022 87 aa5.49□□□□□ -1.53
USP54-214ENST00000492357 FLG2Q5D862 2391 aaPredicted RBP5.49□□□□□ -1.53
USP54-214ENST00000492357 C8orf87E5RJ46 101 aa5.48□□□□□ -1.53
USP54-214ENST00000492357 PRR15Q8IV56 129 aa5.48□□□□□ -1.53
USP54-214ENST00000492357 A0A1B0GVX0 72 aa5.47□□□□□ -1.53
USP54-214ENST00000492357 FAT3Q8TDW7 4589 aa5.46□□□□□ -1.54
USP54-214ENST00000492357 IGKV3D-7A0A0C4DH55 119 aa5.45□□□□□ -1.54
USP54-214ENST00000492357 K7EQZ3 153 aa5.43□□□□□ -1.54
USP54-214ENST00000492357 HIST1H4AP62805 103 aaKnown RBP5.42□□□□□ -1.54
USP54-214ENST00000492357 LRP1Q07954 4544 aaKnown RBP5.42□□□□□ -1.54
USP54-214ENST00000492357 TNXBP22105 4242 aa5.42□□□□□ -1.54
USP54-214ENST00000492357 ABCA13Q86UQ4 5058 aa5.41□□□□□ -1.54
USP54-214ENST00000492357 DMBT1Q9UGM3 2413 aaPredicted RBP5.41□□□□□ -1.54
USP54-214ENST00000492357 HCG22E2RYF7 251 aa5.41□□□□□ -1.54
USP54-214ENST00000492357 PCP4P48539 62 aa5.41□□□□□ -1.54
USP54-214ENST00000492357 DEFB116Q30KQ4 102 aa5.41□□□□□ -1.54
USP54-214ENST00000492357 MYCBP2O75592 4640 aa5.4□□□□□ -1.54
USP54-214ENST00000492357 TMEM254Q8TBM7 123 aa5.4□□□□□ -1.54
USP54-214ENST00000492357 C8orf17Q9NRJ1 99 aa5.4□□□□□ -1.54
USP54-214ENST00000492357 IGHV6-1A0A0B4J1U7 121 aa5.39□□□□□ -1.55
USP54-214ENST00000492357 LINC00313P59037 77 aa5.39□□□□□ -1.55
USP54-214ENST00000492357 SMIM20Q8N5G0 67 aa5.39□□□□□ -1.55
USP54-214ENST00000492357 MMP24-AS1A0A0U1RRL7 71 aa5.38□□□□□ -1.55
USP54-214ENST00000492357 Q8N9L7 120 aa5.38□□□□□ -1.55
USP54-214ENST00000492357 IGLV7-46A0A075B6I9 117 aa5.37□□□□□ -1.55
USP54-214ENST00000492357 hDV103S1A0JD37 113 aa5.37□□□□□ -1.55
USP54-214ENST00000492357 TPRXLQ17RH7 258 aa5.37□□□□□ -1.55
USP54-214ENST00000492357 CASC2Q6XLA1 102 aa5.37□□□□□ -1.55
USP54-214ENST00000492357 FAM236AA0A1B0GUQ0 79 aa5.36□□□□□ -1.55
USP54-214ENST00000492357 FAM236BA0A1B0GV22 79 aa5.36□□□□□ -1.55
USP54-214ENST00000492357 MRPL34Q9BQ48 92 aaKnown RBP5.36□□□□□ -1.55
USP54-214ENST00000492357 A0A087WVE0 104 aa5.35□□□□□ -1.55
USP54-214ENST00000492357 ATOX1O00244 68 aa5.35□□□□□ -1.55
USP54-214ENST00000492357 TP53AIP1Q9HCN2 124 aa5.35□□□□□ -1.55
USP54-214ENST00000492357 Q8N9P0 234 aaPredicted RBP5.34□□□□□ -1.55
USP54-214ENST00000492357 RETNLBQ9BQ08 111 aa5.34□□□□□ -1.55
USP54-214ENST00000492357 KRTAP13-3Q3SY46 172 aa5.33□□□□□ -1.56
USP54-214ENST00000492357 ANAPC13Q9BS18 74 aa5.33□□□□□ -1.56
USP54-214ENST00000492357 KRTAP16-1A8MUX0 517 aa5.32□□□□□ -1.56
USP54-214ENST00000492357 PRR4Q16378 134 aa5.31□□□□□ -1.56
USP54-214ENST00000492357 WFDC13Q8IUB5 93 aa5.31□□□□□ -1.56
USP54-214ENST00000492357 C20orf166-AS1Q96NR2 134 aa5.31□□□□□ -1.56
USP54-214ENST00000492357 A8MUU9 505 aa5.3□□□□□ -1.56
USP54-214ENST00000492357 UQCRQO14949 82 aa5.29□□□□□ -1.56
USP54-214ENST00000492357 Q75L30 129 aa5.29□□□□□ -1.56
USP54-214ENST00000492357 NOTCH2NLQ7Z3S9 236 aa5.29□□□□□ -1.56
USP54-214ENST00000492357 KRTAP4-8Q9BYQ9 185 aa5.29□□□□□ -1.56
USP54-214ENST00000492357 OCR1Q9BZK8 76 aa5.29□□□□□ -1.56
USP54-214ENST00000492357 PCLOQ9Y6V0 5065 aa5.29□□□□□ -1.56
USP54-214ENST00000492357 TRAV7A0A075B6U4 112 aa5.28□□□□□ -1.56
USP54-214ENST00000492357 KRTAP19-4Q3LI73 84 aa5.27□□□□□ -1.57
USP54-214ENST00000492357 SERP2Q8N6R1 65 aa5.27□□□□□ -1.57
USP54-214ENST00000492357 H3BPC8 53 aa5.26□□□□□ -1.57
USP54-214ENST00000492357 COX7CP15954 63 aa5.26□□□□□ -1.57
USP54-214ENST00000492357 C5orf47Q569G3 176 aa5.26□□□□□ -1.57
USP54-214ENST00000492357 C9orf92A6NGG3 77 aa5.25□□□□□ -1.57
USP54-214ENST00000492357 NDUFS5O43920 106 aa5.24□□□□□ -1.57
USP54-214ENST00000492357 RPL37P61927 97 aaKnown RBP5.24□□□□□ -1.57
USP54-214ENST00000492357 TRAV22A0A0B4J277 110 aa5.23□□□□□ -1.57
USP54-214ENST00000492357 MP68P56378 58 aa5.23□□□□□ -1.57
USP54-214ENST00000492357 KRTAP19-1Q8IUB9 90 aa5.21□□□□□ -1.58
USP54-214ENST00000492357 ZCCHC13Q8WW36 166 aaKnown RBP5.21□□□□□ -1.58
USP54-214ENST00000492357 CCDC179H3BU77 68 aa5.2□□□□□ -1.58
USP54-214ENST00000492357 ATP11AUNQ6ZP68 121 aa5.2□□□□□ -1.58
USP54-214ENST00000492357 KRTAP4-12Q9BQ66 201 aa5.2□□□□□ -1.58
USP54-214ENST00000492357 LOC101927531A0A1B0GV80 90 aa5.19□□□□□ -1.58
USP54-214ENST00000492357 KRTAP9-2Q9BYQ4 174 aa5.19□□□□□ -1.58
USP54-214ENST00000492357 SEC61BP60468 96 aaKnown RBP5.18□□□□□ -1.58
USP54-214ENST00000492357 H0Y9P7 68 aa5.17□□□□□ -1.58
USP54-214ENST00000492357 KLKP1Q107X0 134 aa5.17□□□□□ -1.58
USP54-214ENST00000492357 KRTAP9-6A0A140TA67 174 aa5.16□□□□□ -1.58
USP54-214ENST00000492357 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.16□□□□□ -1.58
USP54-214ENST00000492357 NDUFC1O43677 76 aa5.15□□□□□ -1.59
USP54-214ENST00000492357 Q5W150 140 aa5.14□□□□□ -1.59
USP54-214ENST00000492357 A0A0U1RQV1 116 aa5.13□□□□□ -1.59
USP54-214ENST00000492357 C7orf65Q6ZTY9 151 aa5.13□□□□□ -1.59
USP54-214ENST00000492357 C1orf64Q8NEQ6 169 aa5.13□□□□□ -1.59
USP54-214ENST00000492357 IGKV2-30P06310 120 aa5.12□□□□□ -1.59
USP54-214ENST00000492357 C20orf197Q8N268 126 aa5.12□□□□□ -1.59
USP54-214ENST00000492357 LINC00208Q96KT6 92 aa5.12□□□□□ -1.59
USP54-214ENST00000492357 CYP4F30PQ9H0H9 118 aa5.09□□□□□ -1.59
USP54-214ENST00000492357 CYSTM1Q9H1C7 97 aa5.09□□□□□ -1.59
USP54-214ENST00000492357 HMCN2Q8NDA2 5059 aa5.08□□□□□ -1.6
USP54-214ENST00000492357 LCE3BQ5TA77 95 aa5.08□□□□□ -1.6
USP54-214ENST00000492357 HERC1Q15751 4861 aa5.07□□□□□ -1.6
USP54-214ENST00000492357 H7BZZ5 65 aa5.07□□□□□ -1.6
USP54-214ENST00000492357 PCOTHQ58A44 107 aa5.07□□□□□ -1.6
USP54-214ENST00000492357 SPINK7P58062 85 aa5.06□□□□□ -1.6
USP54-214ENST00000492357 SNURFQ9Y675 71 aa5.06□□□□□ -1.6
USP54-214ENST00000492357 IGKV2D-30A0A075B6S6 120 aa5.05□□□□□ -1.6
USP54-214ENST00000492357 TMEM258P61165 79 aa5.05□□□□□ -1.6
USP54-214ENST00000492357 SPANXA2-OT1Q8N9U9 137 aa5.05□□□□□ -1.6
USP54-214ENST00000492357 ATP5EP56381 51 aaPredicted RBP5.02□□□□□ -1.61
USP54-214ENST00000492357 A8MUN3 132 aa5.01□□□□□ -1.61
USP54-214ENST00000492357 LRP2P98164 4655 aa5□□□□□ -1.61
USP54-214ENST00000492357 MPLKIPQ8TAP9 179 aa4.99□□□□□ -1.61
USP54-214ENST00000492357 HRES1P13985 223 aa4.98□□□□□ -1.61
USP54-214ENST00000492357 MUC17Q685J3 4493 aa4.97□□□□□ -1.61
USP54-214ENST00000492357 LPAP08519 4548 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms