RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 VPS25Q9BRG1 176 aa7.8□□□□□ -1.16
SMPD4-220ENST00000491319 KRTAP9-7A8MTY7 169 aa7.78□□□□□ -1.16
SMPD4-220ENST00000491319 A0A1B0GVX0 72 aa7.77□□□□□ -1.17
SMPD4-220ENST00000491319 C8orf87E5RJ46 101 aa7.76□□□□□ -1.17
SMPD4-220ENST00000491319 LCE2BO14633 110 aa7.76□□□□□ -1.17
SMPD4-220ENST00000491319 KRTAP10-10P60014 251 aa7.73□□□□□ -1.17
SMPD4-220ENST00000491319 RBM3P98179 157 aaKnown RBP7.73□□□□□ -1.17
SMPD4-220ENST00000491319 KRTAP9-3Q9BYQ3 159 aa7.73□□□□□ -1.17
SMPD4-220ENST00000491319 ZCCHC13Q8WW36 166 aaKnown RBP7.72□□□□□ -1.17
SMPD4-220ENST00000491319 DSCR8Q96T75 97 aa7.72□□□□□ -1.17
SMPD4-220ENST00000491319 SCGB1C2P0DMR2 95 aa7.71□□□□□ -1.18
SMPD4-220ENST00000491319 UQCR10Q9UDW1 63 aa7.71□□□□□ -1.18
SMPD4-220ENST00000491319 KRTAP19-1Q8IUB9 90 aa7.69□□□□□ -1.18
SMPD4-220ENST00000491319 MTURNQ8N3F0 131 aa7.68□□□□□ -1.18
SMPD4-220ENST00000491319 C9JAW5 83 aa7.67□□□□□ -1.18
SMPD4-220ENST00000491319 J3KT08 172 aa7.67□□□□□ -1.18
SMPD4-220ENST00000491319 SPINK7P58062 85 aa7.67□□□□□ -1.18
SMPD4-220ENST00000491319 BAALC-AS2P0C853 105 aa7.66□□□□□ -1.18
SMPD4-220ENST00000491319 Q6ZQT0 140 aa7.66□□□□□ -1.18
SMPD4-220ENST00000491319 FCGBPQ9Y6R7 5405 aaPredicted RBP7.65□□□□□ -1.18
SMPD4-220ENST00000491319 Q8N9P0 234 aaPredicted RBP7.64□□□□□ -1.19
SMPD4-220ENST00000491319 C21orf62-AS1Q17RA5 79 aa7.63□□□□□ -1.19
SMPD4-220ENST00000491319 NDUFB1O75438 58 aa7.62□□□□□ -1.19
SMPD4-220ENST00000491319 C8orf17Q9NRJ1 99 aa7.61□□□□□ -1.19
SMPD4-220ENST00000491319 WFDC13Q8IUB5 93 aa7.6□□□□□ -1.19
SMPD4-220ENST00000491319 TMA7Q9Y2S6 64 aaKnown RBP7.6□□□□□ -1.19
SMPD4-220ENST00000491319 A8MWP4 228 aa7.59□□□□□ -1.19
SMPD4-220ENST00000491319 NAA38Q9BRA0 125 aaKnown RBP7.58□□□□□ -1.2
SMPD4-220ENST00000491319 IGKV3D-7A0A0C4DH55 119 aa7.57□□□□□ -1.2
SMPD4-220ENST00000491319 LYRM7Q5U5X0 104 aa7.57□□□□□ -1.2
SMPD4-220ENST00000491319 LOC110117498A0A087WWA1 95 aa7.56□□□□□ -1.2
SMPD4-220ENST00000491319 JMJD7-PLA2G4BH0Y9G9 81 aa7.56□□□□□ -1.2
SMPD4-220ENST00000491319 ATXN8Q156A1 80 aa7.56□□□□□ -1.2
SMPD4-220ENST00000491319 Q6ZVQ6 151 aa7.54□□□□□ -1.2
SMPD4-220ENST00000491319 A0A1B0GW54 56 aa7.53□□□□□ -1.2
SMPD4-220ENST00000491319 C14orf132Q9NPU4 83 aa7.53□□□□□ -1.2
SMPD4-220ENST00000491319 PRR15Q8IV56 129 aa7.51□□□□□ -1.21
SMPD4-220ENST00000491319 M0R143 59 aa7.5□□□□□ -1.21
SMPD4-220ENST00000491319 PDE6GP18545 87 aa7.5□□□□□ -1.21
SMPD4-220ENST00000491319 MMP24-AS1A0A0U1RRL7 71 aa7.49□□□□□ -1.21
SMPD4-220ENST00000491319 KRTAP19-6Q3LI70 58 aa7.49□□□□□ -1.21
SMPD4-220ENST00000491319 NREPQ16612 68 aa7.46□□□□□ -1.22
SMPD4-220ENST00000491319 TMEM254Q8TBM7 123 aa7.46□□□□□ -1.22
SMPD4-220ENST00000491319 MRPL34Q9BQ48 92 aaKnown RBP7.46□□□□□ -1.22
SMPD4-220ENST00000491319 LINC00846Q9NV44 126 aa7.45□□□□□ -1.22
SMPD4-220ENST00000491319 K7EQZ3 153 aa7.42□□□□□ -1.22
SMPD4-220ENST00000491319 H1FX-AS1Q4G0G2 97 aa7.42□□□□□ -1.22
SMPD4-220ENST00000491319 hDV103S1A0JD37 113 aa7.41□□□□□ -1.22
SMPD4-220ENST00000491319 NDUFS5O43920 106 aa7.41□□□□□ -1.22
SMPD4-220ENST00000491319 MACF1Q9UPN3 7388 aaKnown RBP7.41□□□□□ -1.22
SMPD4-220ENST00000491319 IGKV2D-30A0A075B6S6 120 aa7.37□□□□□ -1.23
SMPD4-220ENST00000491319 IGKV2-30P06310 120 aa7.37□□□□□ -1.23
SMPD4-220ENST00000491319 Q5W150 140 aa7.35□□□□□ -1.23
SMPD4-220ENST00000491319 BATFQ16520 125 aa7.34□□□□□ -1.23
SMPD4-220ENST00000491319 C7orf65Q6ZTY9 151 aa7.34□□□□□ -1.23
SMPD4-220ENST00000491319 H3BT86 120 aa7.32□□□□□ -1.24
SMPD4-220ENST00000491319 BPY2O14599 106 aa7.32□□□□□ -1.24
SMPD4-220ENST00000491319 SMIM6P0DI80 62 aa7.32□□□□□ -1.24
SMPD4-220ENST00000491319 SYNE2Q8WXH0 6885 aaKnown RBP7.31□□□□□ -1.24
SMPD4-220ENST00000491319 Q8N9L7 120 aa7.29□□□□□ -1.24
SMPD4-220ENST00000491319 C9orf118A6NHY6 69 aa7.27□□□□□ -1.25
SMPD4-220ENST00000491319 HCG22E2RYF7 251 aa7.26□□□□□ -1.25
SMPD4-220ENST00000491319 TSTD3H0UI37 97 aa7.26□□□□□ -1.25
SMPD4-220ENST00000491319 SMCPP49901 116 aaPredicted RBP7.26□□□□□ -1.25
SMPD4-220ENST00000491319 C4orf26Q17RF5 130 aa7.26□□□□□ -1.25
SMPD4-220ENST00000491319 CASC2Q6XLA1 102 aa7.26□□□□□ -1.25
SMPD4-220ENST00000491319 A0A1W2PPM0 123 aa7.25□□□□□ -1.25
SMPD4-220ENST00000491319 TAX1BP3O14907 124 aa7.24□□□□□ -1.25
SMPD4-220ENST00000491319 KRTAP6-3Q3LI67 103 aa7.23□□□□□ -1.25
SMPD4-220ENST00000491319 LOC105371267A0A1B0GV96 52 aa7.19□□□□□ -1.26
SMPD4-220ENST00000491319 CXCL6P80162 114 aa7.19□□□□□ -1.26
SMPD4-220ENST00000491319 C5orf47Q569G3 176 aa7.19□□□□□ -1.26
SMPD4-220ENST00000491319 FAM236AA0A1B0GUQ0 79 aa7.16□□□□□ -1.26
SMPD4-220ENST00000491319 FAM236BA0A1B0GV22 79 aa7.16□□□□□ -1.26
SMPD4-220ENST00000491319 KRTAP3-1Q9BYR8 98 aa7.14□□□□□ -1.27
SMPD4-220ENST00000491319 SPCS1Q9Y6A9 102 aa7.14□□□□□ -1.27
SMPD4-220ENST00000491319 S4R3F8 94 aa7.13□□□□□ -1.27
SMPD4-220ENST00000491319 MT1BP07438 61 aa7.11□□□□□ -1.27
SMPD4-220ENST00000491319 UBL5Q9BZL1 73 aa7.09□□□□□ -1.27
SMPD4-220ENST00000491319 A6NN06 94 aa7.08□□□□□ -1.28
SMPD4-220ENST00000491319 LCA10Q71F78 164 aa7.08□□□□□ -1.28
SMPD4-220ENST00000491319 C1orf64Q8NEQ6 169 aa7.08□□□□□ -1.28
SMPD4-220ENST00000491319 Q5VV11 94 aa7.07□□□□□ -1.28
SMPD4-220ENST00000491319 CSAG1Q6PB30 78 aa7.07□□□□□ -1.28
SMPD4-220ENST00000491319 SPRR2GQ9BYE4 73 aa7.06□□□□□ -1.28
SMPD4-220ENST00000491319 KRTAP19-8Q3LI54 63 aa7.05□□□□□ -1.28
SMPD4-220ENST00000491319 PRO0461Q9UI25 63 aa7.05□□□□□ -1.28
SMPD4-220ENST00000491319 KLKP1Q107X0 134 aa6.98□□□□□ -1.29
SMPD4-220ENST00000491319 TP53AIP1Q9HCN2 124 aa6.98□□□□□ -1.29
SMPD4-220ENST00000491319 PCP4L1A6NKN8 68 aa6.97□□□□□ -1.29
SMPD4-220ENST00000491319 K7EP34 96 aa6.97□□□□□ -1.29
SMPD4-220ENST00000491319 KRTAP10-5P60370 271 aa6.97□□□□□ -1.29
SMPD4-220ENST00000491319 COL5A1-AS1Q5SY13 56 aa6.95□□□□□ -1.3
SMPD4-220ENST00000491319 A0A087WVE0 104 aa6.91□□□□□ -1.3
SMPD4-220ENST00000491319 CYP4F30PQ9H0H9 118 aa6.91□□□□□ -1.3
SMPD4-220ENST00000491319 MUC12Q9UKN1 5478 aa6.91□□□□□ -1.3
SMPD4-220ENST00000491319 NEBP20929 6669 aa6.88□□□□□ -1.31
SMPD4-220ENST00000491319 TRAV22A0A0B4J277 110 aa6.85□□□□□ -1.31
SMPD4-220ENST00000491319 KRTAP5-9P26371 169 aa6.84□□□□□ -1.31
SMPD4-220ENST00000491319 ETDBQ3ZM63 59 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms