RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 TIMM8BQ9Y5J9 83 aaPredicted RBP-0.34□□□□□ -2.46
XRN1-213ENST00000489241 LRRK2Q5S007 2527 aa-0.34□□□□□ -2.46
XRN1-213ENST00000489241 ANKRD11Q6UB99 2663 aaPredicted RBP-0.35□□□□□ -2.47
XRN1-213ENST00000489241 TACC2O95359 2948 aa-0.35□□□□□ -2.47
XRN1-213ENST00000489241 NCBP2-AS2Q69YL0 99 aa-0.35□□□□□ -2.47
XRN1-213ENST00000489241 ACACAQ13085 2346 aa-0.35□□□□□ -2.47
XRN1-213ENST00000489241 MROH1Q8NDA8 1641 aa-0.35□□□□□ -2.47
XRN1-213ENST00000489241 DNAH9Q9NYC9 4486 aa-0.35□□□□□ -2.47
XRN1-213ENST00000489241 TOGARAM1Q9Y4F4 1720 aa-0.35□□□□□ -2.47
XRN1-213ENST00000489241 AKAP9Q99996 3911 aa-0.36□□□□□ -2.47
XRN1-213ENST00000489241 SFTA3P0C7M3 94 aa-0.36□□□□□ -2.47
XRN1-213ENST00000489241 SPRR2FQ96RM1 72 aa-0.36□□□□□ -2.47
XRN1-213ENST00000489241 MADDQ8WXG6 1647 aa-0.36□□□□□ -2.47
XRN1-213ENST00000489241 KALRNO60229 2985 aa-0.37□□□□□ -2.47
XRN1-213ENST00000489241 DEFB110Q30KQ9 67 aa-0.37□□□□□ -2.47
XRN1-213ENST00000489241 VPS13BQ7Z7G8 4022 aa-0.37□□□□□ -2.47
XRN1-213ENST00000489241 FAT3Q8TDW7 4589 aa-0.38□□□□□ -2.47
XRN1-213ENST00000489241 LAMA5O15230 3695 aa-0.38□□□□□ -2.47
XRN1-213ENST00000489241 FAM186AA6NE01 2351 aa-0.38□□□□□ -2.47
XRN1-213ENST00000489241 PCLOQ9Y6V0 5065 aa-0.38□□□□□ -2.47
XRN1-213ENST00000489241 NBPF19A0A087WUL8 3843 aa-0.38□□□□□ -2.47
XRN1-213ENST00000489241 TEP1Q99973 2627 aaKnown RBP-0.38□□□□□ -2.47
XRN1-213ENST00000489241 EFCAB5A4FU69 1503 aa-0.38□□□□□ -2.47
XRN1-213ENST00000489241 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.39□□□□□ -2.47
XRN1-213ENST00000489241 H3BUA1 57 aa-0.39□□□□□ -2.47
XRN1-213ENST00000489241 K7EMI3 77 aa-0.39□□□□□ -2.47
XRN1-213ENST00000489241 CCDC168Q8NDH2 2452 aa-0.4□□□□□ -2.47
XRN1-213ENST00000489241 PKHD1L1Q86WI1 4243 aa-0.4□□□□□ -2.47
XRN1-213ENST00000489241 NBEAQ8NFP9 2946 aa-0.41□□□□□ -2.47
XRN1-213ENST00000489241 KMT2CQ8NEZ4 4911 aaKnown RBP-0.41□□□□□ -2.47
XRN1-213ENST00000489241 DNAH6Q9C0G6 4158 aa-0.41□□□□□ -2.47
XRN1-213ENST00000489241 M0R1W7 72 aa-0.41□□□□□ -2.48
XRN1-213ENST00000489241 UTP20O75691 2785 aaKnown RBP-0.41□□□□□ -2.48
XRN1-213ENST00000489241 MYO18BQ8IUG5 2567 aa-0.42□□□□□ -2.48
XRN1-213ENST00000489241 NBEAL2Q6ZNJ1 2754 aa-0.42□□□□□ -2.48
XRN1-213ENST00000489241 IGLV5-48A0A075B6I7 105 aa-0.42□□□□□ -2.48
XRN1-213ENST00000489241 A0A087WWC5 75 aa-0.42□□□□□ -2.48
XRN1-213ENST00000489241 CCDC180Q9P1Z9 1646 aa-0.42□□□□□ -2.48
XRN1-213ENST00000489241 ANK3Q12955 4377 aaKnown RBP-0.43□□□□□ -2.48
XRN1-213ENST00000489241 NMES1Q9C002 83 aa-0.43□□□□□ -2.48
XRN1-213ENST00000489241 LAMA1P25391 3075 aa-0.44□□□□□ -2.48
XRN1-213ENST00000489241 LY75O60449 1722 aa-0.44□□□□□ -2.48
XRN1-213ENST00000489241 CDC42BPAQ5VT25 1732 aa-0.44□□□□□ -2.48
XRN1-213ENST00000489241 SERF2P84101 59 aa-0.44□□□□□ -2.48
XRN1-213ENST00000489241 KRTAP20-2Q3LI61 65 aa-0.44□□□□□ -2.48
XRN1-213ENST00000489241 NOP10Q9NPE3 64 aaKnown RBP-0.44□□□□□ -2.48
XRN1-213ENST00000489241 CROCC2H7BZ55 1655 aa-0.44□□□□□ -2.48
XRN1-213ENST00000489241 ABCA6Q8N139 1617 aa-0.45□□□□□ -2.48
XRN1-213ENST00000489241 STARD9Q9P2P6 4700 aa-0.45□□□□□ -2.48
XRN1-213ENST00000489241 ACACBO00763 2458 aa-0.45□□□□□ -2.48
XRN1-213ENST00000489241 CLASP1Q7Z460 1538 aa-0.46□□□□□ -2.48
XRN1-213ENST00000489241 MMP24-AS1A0A0U1RRL7 71 aa-0.46□□□□□ -2.48
XRN1-213ENST00000489241 MT4P47944 62 aa-0.46□□□□□ -2.48
XRN1-213ENST00000489241 S100ZQ8WXG8 99 aa-0.46□□□□□ -2.48
XRN1-213ENST00000489241 VPS13DQ5THJ4 4388 aa-0.46□□□□□ -2.48
XRN1-213ENST00000489241 APOBP04114 4563 aaKnown RBP-0.47□□□□□ -2.48
XRN1-213ENST00000489241 SACSQ9NZJ4 4579 aa-0.47□□□□□ -2.48
XRN1-213ENST00000489241 MGAM2Q2M2H8 2515 aa-0.47□□□□□ -2.48
XRN1-213ENST00000489241 DNAH3Q8TD57 4116 aa-0.47□□□□□ -2.49
XRN1-213ENST00000489241 A0A1B0GUL6 1792 aa-0.47□□□□□ -2.49
XRN1-213ENST00000489241 ABRACLQ9P1F3 81 aa-0.48□□□□□ -2.49
XRN1-213ENST00000489241 TIAM1Q13009 1591 aa-0.49□□□□□ -2.49
XRN1-213ENST00000489241 HERC1Q15751 4861 aa-0.49□□□□□ -2.49
XRN1-213ENST00000489241 DNAH11Q96DT5 4516 aa-0.5□□□□□ -2.49
XRN1-213ENST00000489241 TNP1P09430 55 aa-0.5□□□□□ -2.49
XRN1-213ENST00000489241 TMEM167BQ9NRX6 74 aa-0.5□□□□□ -2.49
XRN1-213ENST00000489241 EEA1Q15075 1411 aa-0.5□□□□□ -2.49
XRN1-213ENST00000489241 A0A0C4DFX4 3053 aa-0.5□□□□□ -2.49
XRN1-213ENST00000489241 GLI2P10070 1586 aa-0.51□□□□□ -2.49
XRN1-213ENST00000489241 SMIM5Q71RC9 77 aa-0.51□□□□□ -2.49
XRN1-213ENST00000489241 LINC00308Q8TCZ7 52 aa-0.51□□□□□ -2.49
XRN1-213ENST00000489241 ALS2Q96Q42 1657 aa-0.51□□□□□ -2.49
XRN1-213ENST00000489241 TRIOO75962 3097 aa-0.51□□□□□ -2.49
XRN1-213ENST00000489241 RIF1Q5UIP0 2472 aaKnown RBP-0.52□□□□□ -2.49
XRN1-213ENST00000489241 FAT1Q14517 4588 aa-0.52□□□□□ -2.49
XRN1-213ENST00000489241 WDR87Q6ZQQ6 2873 aa-0.52□□□□□ -2.49
XRN1-213ENST00000489241 RANBP2P49792 3224 aaKnown RBP-0.52□□□□□ -2.49
XRN1-213ENST00000489241 ITPR3Q14573 2671 aa-0.52□□□□□ -2.49
XRN1-213ENST00000489241 SMIM31A0A1B0GVY4 71 aa-0.53□□□□□ -2.49
XRN1-213ENST00000489241 IGIPA6NJ69 53 aa-0.53□□□□□ -2.49
XRN1-213ENST00000489241 UGGT1Q9NYU2 1555 aa-0.53□□□□□ -2.49
XRN1-213ENST00000489241 KAAG1Q9UBP8 84 aa-0.54□□□□□ -2.5
XRN1-213ENST00000489241 CPS1P31327 1500 aa-0.54□□□□□ -2.5
XRN1-213ENST00000489241 USP9YO00507 2555 aaPredicted RBP-0.54□□□□□ -2.5
XRN1-213ENST00000489241 SPENQ96T58 3664 aaKnown RBP-0.54□□□□□ -2.5
XRN1-213ENST00000489241 SMIM27A0A1W2PRY6 76 aa-0.55□□□□□ -2.5
XRN1-213ENST00000489241 NEBP20929 6669 aa-0.55□□□□□ -2.5
XRN1-213ENST00000489241 ABCA10Q8WWZ4 1543 aa-0.55□□□□□ -2.5
XRN1-213ENST00000489241 DNAH1Q9P2D7 4330 aa-0.55□□□□□ -2.5
XRN1-213ENST00000489241 MUC17Q685J3 4493 aa-0.56□□□□□ -2.5
XRN1-213ENST00000489241 DNAH2Q9P225 4427 aa-0.56□□□□□ -2.5
XRN1-213ENST00000489241 M0QY20 66 aa-0.56□□□□□ -2.5
XRN1-213ENST00000489241 CLPSL2Q6UWE3 100 aa-0.56□□□□□ -2.5
XRN1-213ENST00000489241 UBR4Q5T4S7 5183 aa-0.56□□□□□ -2.5
XRN1-213ENST00000489241 DEFB1P60022 68 aa-0.57□□□□□ -2.5
XRN1-213ENST00000489241 TLN2Q9Y4G6 2542 aa-0.58□□□□□ -2.5
XRN1-213ENST00000489241 H0YGX0 51 aa-0.58□□□□□ -2.5
XRN1-213ENST00000489241 COL12A1Q99715 3063 aa-0.58□□□□□ -2.5
XRN1-213ENST00000489241 EFCAB6Q5THR3 1501 aa-0.59□□□□□ -2.5
XRN1-213ENST00000489241 WFDC10BQ8IUB3 73 aa-0.59□□□□□ -2.5
Retrieved 100 of 20,778 RNA–protein pairs in 1149.7 ms