RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 UTP20O75691 2785 aaKnown RBP-0.64□□□□□ -2.51
PTPN4-212ENST00000488896 NBEAL2Q6ZNJ1 2754 aa-0.64□□□□□ -2.51
PTPN4-212ENST00000488896 ITPR3Q14573 2671 aa-0.64□□□□□ -2.51
PTPN4-212ENST00000488896 STARD9Q9P2P6 4700 aa-0.64□□□□□ -2.51
PTPN4-212ENST00000488896 DIP2AQ14689 1571 aa-0.65□□□□□ -2.51
PTPN4-212ENST00000488896 ABRACLQ9P1F3 81 aa-0.65□□□□□ -2.51
PTPN4-212ENST00000488896 THOC2Q8NI27 1593 aaKnown RBP-0.66□□□□□ -2.51
PTPN4-212ENST00000488896 RB1CC1Q8TDY2 1594 aa-0.66□□□□□ -2.51
PTPN4-212ENST00000488896 KRTAP19-5Q3LI72 72 aa-0.66□□□□□ -2.52
PTPN4-212ENST00000488896 ABCC6O95255 1503 aa-0.66□□□□□ -2.52
PTPN4-212ENST00000488896 KIF1AQ12756 1690 aa-0.66□□□□□ -2.52
PTPN4-212ENST00000488896 DNMBPQ6XZF7 1577 aa-0.66□□□□□ -2.52
PTPN4-212ENST00000488896 CD163L1Q9NR16 1453 aa-0.67□□□□□ -2.52
PTPN4-212ENST00000488896 LINC01549A6NIU2 74 aa-0.67□□□□□ -2.52
PTPN4-212ENST00000488896 SMCO4Q9NRQ5 59 aa-0.67□□□□□ -2.52
PTPN4-212ENST00000488896 LRRIQ1Q96JM4 1722 aa-0.67□□□□□ -2.52
PTPN4-212ENST00000488896 NBPF19A0A087WUL8 3843 aa-0.67□□□□□ -2.52
PTPN4-212ENST00000488896 RIF1Q5UIP0 2472 aaKnown RBP-0.67□□□□□ -2.52
PTPN4-212ENST00000488896 PDCD5O14737 125 aa-0.68□□□□□ -2.52
PTPN4-212ENST00000488896 SMR3BP02814 79 aaPredicted RBP-0.68□□□□□ -2.52
PTPN4-212ENST00000488896 DEFB114Q30KQ6 69 aa-0.68□□□□□ -2.52
PTPN4-212ENST00000488896 RRBP1Q9P2E9 1410 aaKnown RBP-0.68□□□□□ -2.52
PTPN4-212ENST00000488896 DNAH9Q9NYC9 4486 aa-0.68□□□□□ -2.52
PTPN4-212ENST00000488896 ZZEF1O43149 2961 aa-0.68□□□□□ -2.52
PTPN4-212ENST00000488896 LAMA1P25391 3075 aa-0.68□□□□□ -2.52
PTPN4-212ENST00000488896 ITSN2Q9NZM3 1697 aa-0.69□□□□□ -2.52
PTPN4-212ENST00000488896 NBEAQ8NFP9 2946 aa-0.69□□□□□ -2.52
PTPN4-212ENST00000488896 CFAP74Q9C0B2 1584 aa-0.7□□□□□ -2.52
PTPN4-212ENST00000488896 HERC2O95714 4834 aa-0.7□□□□□ -2.52
PTPN4-212ENST00000488896 M0QY20 66 aa-0.7□□□□□ -2.52
PTPN4-212ENST00000488896 KAAG1Q9UBP8 84 aa-0.7□□□□□ -2.52
PTPN4-212ENST00000488896 LY75O60449 1722 aa-0.7□□□□□ -2.52
PTPN4-212ENST00000488896 K7EMI3 77 aa-0.71□□□□□ -2.52
PTPN4-212ENST00000488896 M0R1W7 72 aa-0.71□□□□□ -2.52
PTPN4-212ENST00000488896 PKD1P98161 4303 aa-0.71□□□□□ -2.52
PTPN4-212ENST00000488896 DUOX2Q9NRD8 1548 aa-0.71□□□□□ -2.52
PTPN4-212ENST00000488896 RNF17Q9BXT8 1623 aaKnown RBP-0.71□□□□□ -2.52
PTPN4-212ENST00000488896 TLN2Q9Y4G6 2542 aa-0.72□□□□□ -2.52
PTPN4-212ENST00000488896 UBR4Q5T4S7 5183 aa-0.72□□□□□ -2.52
PTPN4-212ENST00000488896 SMIM27A0A1W2PRY6 76 aa-0.72□□□□□ -2.52
PTPN4-212ENST00000488896 INO80Q9ULG1 1556 aaPredicted RBP-0.72□□□□□ -2.52
PTPN4-212ENST00000488896 MYO5CQ9NQX4 1742 aa-0.72□□□□□ -2.53
PTPN4-212ENST00000488896 DOPEY1Q5JWR5 2465 aa-0.73□□□□□ -2.53
PTPN4-212ENST00000488896 CDC42BPGQ6DT37 1551 aa-0.73□□□□□ -2.53
PTPN4-212ENST00000488896 EIF2AK4Q9P2K8 1649 aaKnown RBP-0.73□□□□□ -2.53
PTPN4-212ENST00000488896 M0QZ58 72 aa-0.73□□□□□ -2.53
PTPN4-212ENST00000488896 SPART-AS1P0CW21 52 aa-0.73□□□□□ -2.53
PTPN4-212ENST00000488896 NMES1Q9C002 83 aa-0.73□□□□□ -2.53
PTPN4-212ENST00000488896 FAT3Q8TDW7 4589 aa-0.73□□□□□ -2.53
PTPN4-212ENST00000488896 ASXL1Q8IXJ9 1541 aa-0.74□□□□□ -2.53
PTPN4-212ENST00000488896 DNAH6Q9C0G6 4158 aa-0.74□□□□□ -2.53
PTPN4-212ENST00000488896 MUC17Q685J3 4493 aa-0.74□□□□□ -2.53
PTPN4-212ENST00000488896 KRTAP8-1Q8IUC2 63 aa-0.74□□□□□ -2.53
PTPN4-212ENST00000488896 LINC00308Q8TCZ7 52 aa-0.74□□□□□ -2.53
PTPN4-212ENST00000488896 USH2AO75445 5202 aa-0.74□□□□□ -2.53
PTPN4-212ENST00000488896 ABCA8O94911 1581 aa-0.74□□□□□ -2.53
PTPN4-212ENST00000488896 USP9XQ93008 2570 aaPredicted RBP-0.75□□□□□ -2.53
PTPN4-212ENST00000488896 MT1XP80297 61 aa-0.75□□□□□ -2.53
PTPN4-212ENST00000488896 SERF2P84101 59 aa-0.75□□□□□ -2.53
PTPN4-212ENST00000488896 TMEM167BQ9NRX6 74 aa-0.75□□□□□ -2.53
PTPN4-212ENST00000488896 PKHD1L1Q86WI1 4243 aa-0.75□□□□□ -2.53
PTPN4-212ENST00000488896 UGGT2Q9NYU1 1516 aa-0.75□□□□□ -2.53
PTPN4-212ENST00000488896 ANK3Q12955 4377 aaKnown RBP-0.75□□□□□ -2.53
PTPN4-212ENST00000488896 AKAP9Q99996 3911 aa-0.76□□□□□ -2.53
PTPN4-212ENST00000488896 WFDC10BQ8IUB3 73 aa-0.76□□□□□ -2.53
PTPN4-212ENST00000488896 CDC42BPAQ5VT25 1732 aa-0.76□□□□□ -2.53
PTPN4-212ENST00000488896 HTTP42858 3142 aa-0.77□□□□□ -2.53
PTPN4-212ENST00000488896 NHSQ6T4R5 1651 aa-0.77□□□□□ -2.53
PTPN4-212ENST00000488896 VPS13BQ7Z7G8 4022 aa-0.77□□□□□ -2.53
PTPN4-212ENST00000488896 A8MTW9 85 aa-0.77□□□□□ -2.53
PTPN4-212ENST00000488896 KALRNO60229 2985 aa-0.78□□□□□ -2.53
PTPN4-212ENST00000488896 MROH1Q8NDA8 1641 aa-0.78□□□□□ -2.53
PTPN4-212ENST00000488896 MAST1Q9Y2H9 1570 aa-0.78□□□□□ -2.53
PTPN4-212ENST00000488896 VPS13DQ5THJ4 4388 aa-0.78□□□□□ -2.53
PTPN4-212ENST00000488896 A0A0C4DFX4 3053 aa-0.78□□□□□ -2.53
PTPN4-212ENST00000488896 IQGAP3Q86VI3 1631 aa-0.78□□□□□ -2.54
PTPN4-212ENST00000488896 LINC01546A6NGU7 62 aa-0.79□□□□□ -2.54
PTPN4-212ENST00000488896 MT1EP04732 61 aa-0.79□□□□□ -2.54
PTPN4-212ENST00000488896 C3P01024 1663 aa-0.79□□□□□ -2.54
PTPN4-212ENST00000488896 ABCA9Q8IUA7 1624 aa-0.79□□□□□ -2.54
PTPN4-212ENST00000488896 SPTAN1Q13813 2472 aaKnown RBP-0.8□□□□□ -2.54
PTPN4-212ENST00000488896 GLI2P10070 1586 aa-0.8□□□□□ -2.54
PTPN4-212ENST00000488896 CLASP1Q7Z460 1538 aa-0.8□□□□□ -2.54
PTPN4-212ENST00000488896 EEA1Q15075 1411 aa-0.81□□□□□ -2.54
PTPN4-212ENST00000488896 DNAH11Q96DT5 4516 aa-0.81□□□□□ -2.54
PTPN4-212ENST00000488896 DNAH3Q8TD57 4116 aa-0.81□□□□□ -2.54
PTPN4-212ENST00000488896 COL6A5A8TX70 2615 aa-0.81□□□□□ -2.54
PTPN4-212ENST00000488896 WDR87Q6ZQQ6 2873 aa-0.81□□□□□ -2.54
PTPN4-212ENST00000488896 A0A1B0GUL6 1792 aa-0.81□□□□□ -2.54
PTPN4-212ENST00000488896 APOBP04114 4563 aaKnown RBP-0.82□□□□□ -2.54
PTPN4-212ENST00000488896 MT1LQ93083 61 aa-0.82□□□□□ -2.54
PTPN4-212ENST00000488896 TRIOO75962 3097 aa-0.83□□□□□ -2.54
PTPN4-212ENST00000488896 CROCC2H7BZ55 1655 aa-0.83□□□□□ -2.54
PTPN4-212ENST00000488896 H0YGX0 51 aa-0.83□□□□□ -2.54
PTPN4-212ENST00000488896 NIPBLQ6KC79 2804 aaeCLIP-0.83□□□□□ -2.54
PTPN4-212ENST00000488896 MADDQ8WXG6 1647 aa-0.83□□□□□ -2.54
PTPN4-212ENST00000488896 TIAM1Q13009 1591 aa-0.83□□□□□ -2.54
PTPN4-212ENST00000488896 IGIPA6NJ69 53 aa-0.84□□□□□ -2.54
PTPN4-212ENST00000488896 MT1HL1P0DM35 61 aa-0.84□□□□□ -2.54
PTPN4-212ENST00000488896 S100ZQ8WXG8 99 aa-0.84□□□□□ -2.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms