RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 ORMDL1Q9P0S3 153 aa3.04□□□□□ -1.92
CUX1-208ENST00000485792 SEC61GP60059 68 aa3.03□□□□□ -1.92
CUX1-208ENST00000485792 NAA38Q9BRA0 125 aaKnown RBP3.03□□□□□ -1.92
CUX1-208ENST00000485792 LINC00472Q9H8W2 130 aa3.03□□□□□ -1.92
CUX1-208ENST00000485792 SS18L2Q9UHA2 77 aa3.03□□□□□ -1.92
CUX1-208ENST00000485792 FSIP2Q5CZC0 6907 aa3.02□□□□□ -1.93
CUX1-208ENST00000485792 M0R143 59 aa3.02□□□□□ -1.93
CUX1-208ENST00000485792 PCOTHQ58A44 107 aa3.02□□□□□ -1.93
CUX1-208ENST00000485792 Q75L30 129 aa3.02□□□□□ -1.93
CUX1-208ENST00000485792 A0A087WSZ3 146 aa3.01□□□□□ -1.93
CUX1-208ENST00000485792 A8MUU9 505 aa3.01□□□□□ -1.93
CUX1-208ENST00000485792 KRTAP16-1A8MUX0 517 aa3.01□□□□□ -1.93
CUX1-208ENST00000485792 DNAL4O96015 105 aa3.01□□□□□ -1.93
CUX1-208ENST00000485792 FABP2P12104 132 aa3.01□□□□□ -1.93
CUX1-208ENST00000485792 PSMB2P49721 201 aa3.01□□□□□ -1.93
CUX1-208ENST00000485792 MT1HP80294 61 aa3.01□□□□□ -1.93
CUX1-208ENST00000485792 ANKRD29Q8N6D5 301 aa3.01□□□□□ -1.93
CUX1-208ENST00000485792 OBSCN-AS1Q96MR7 158 aa3.01□□□□□ -1.93
CUX1-208ENST00000485792 C20orf166-AS1Q96NR2 134 aa3.01□□□□□ -1.93
CUX1-208ENST00000485792 A0A1B0GV72 72 aa3□□□□□ -1.93
CUX1-208ENST00000485792 A0A1B0GW54 56 aa3□□□□□ -1.93
CUX1-208ENST00000485792 NOTCH2NLQ7Z3S9 236 aa3□□□□□ -1.93
CUX1-208ENST00000485792 TSTD3H0UI37 97 aa2.99□□□□□ -1.93
CUX1-208ENST00000485792 BAALC-AS2P0C853 105 aa2.99□□□□□ -1.93
CUX1-208ENST00000485792 RBM3P98179 157 aaKnown RBP2.99□□□□□ -1.93
CUX1-208ENST00000485792 TRBV20-1A0A075B6N2 111 aa2.98□□□□□ -1.93
CUX1-208ENST00000485792 LOC110117498A0A087WWA1 95 aa2.98□□□□□ -1.93
CUX1-208ENST00000485792 TAX1BP3O14907 124 aa2.98□□□□□ -1.93
CUX1-208ENST00000485792 CCKP06307 115 aa2.98□□□□□ -1.93
CUX1-208ENST00000485792 SCGB1C2P0DMR2 95 aa2.98□□□□□ -1.93
CUX1-208ENST00000485792 ATXN8Q156A1 80 aa2.98□□□□□ -1.93
CUX1-208ENST00000485792 Q6ZQT0 140 aa2.98□□□□□ -1.93
CUX1-208ENST00000485792 JMJD7-PLA2G4BH0Y9G9 81 aa2.96□□□□□ -1.94
CUX1-208ENST00000485792 A0A1W2PPM0 123 aa2.95□□□□□ -1.94
CUX1-208ENST00000485792 C9JAW5 83 aa2.95□□□□□ -1.94
CUX1-208ENST00000485792 PDE6GP18545 87 aa2.95□□□□□ -1.94
CUX1-208ENST00000485792 DSCR8Q96T75 97 aa2.95□□□□□ -1.94
CUX1-208ENST00000485792 H3BT86 120 aa2.94□□□□□ -1.94
CUX1-208ENST00000485792 IGKV4-1P06312 121 aa2.94□□□□□ -1.94
CUX1-208ENST00000485792 LINC00313P59037 77 aa2.94□□□□□ -1.94
CUX1-208ENST00000485792 LYRM7Q5U5X0 104 aa2.94□□□□□ -1.94
CUX1-208ENST00000485792 USH2AO75445 5202 aa2.93□□□□□ -1.94
CUX1-208ENST00000485792 SSPOA2VEC9 5147 aa2.93□□□□□ -1.94
CUX1-208ENST00000485792 A0A1B0GVX0 72 aa2.93□□□□□ -1.94
CUX1-208ENST00000485792 PCP4L1A6NKN8 68 aa2.93□□□□□ -1.94
CUX1-208ENST00000485792 J3KT08 172 aa2.93□□□□□ -1.94
CUX1-208ENST00000485792 DSCR10P59022 87 aa2.93□□□□□ -1.94
CUX1-208ENST00000485792 DEFB116Q30KQ4 102 aa2.93□□□□□ -1.94
CUX1-208ENST00000485792 ATP11AUNQ6ZP68 121 aa2.93□□□□□ -1.94
CUX1-208ENST00000485792 MTURNQ8N3F0 131 aa2.93□□□□□ -1.94
CUX1-208ENST00000485792 C8orf87E5RJ46 101 aa2.92□□□□□ -1.94
CUX1-208ENST00000485792 KRTAP10-6P60371 365 aaPredicted RBP2.92□□□□□ -1.94
CUX1-208ENST00000485792 PRO0461Q9UI25 63 aa2.92□□□□□ -1.94
CUX1-208ENST00000485792 KRTAP2-2Q9BYT5 123 aa2.91□□□□□ -1.94
CUX1-208ENST00000485792 C14orf132Q9NPU4 83 aa2.91□□□□□ -1.94
CUX1-208ENST00000485792 A8MWP4 228 aa2.9□□□□□ -1.95
CUX1-208ENST00000485792 BATFQ16520 125 aa2.9□□□□□ -1.95
CUX1-208ENST00000485792 SIGMAR1Q99720 223 aa2.9□□□□□ -1.95
CUX1-208ENST00000485792 IGHV6-1A0A0B4J1U7 121 aa2.89□□□□□ -1.95
CUX1-208ENST00000485792 IGKV3D-7A0A0C4DH55 119 aa2.89□□□□□ -1.95
CUX1-208ENST00000485792 HRES1P13985 223 aa2.89□□□□□ -1.95
CUX1-208ENST00000485792 COL5A1-AS1Q5SY13 56 aa2.89□□□□□ -1.95
CUX1-208ENST00000485792 VPS25Q9BRG1 176 aa2.89□□□□□ -1.95
CUX1-208ENST00000485792 MT3P25713 68 aa2.88□□□□□ -1.95
CUX1-208ENST00000485792 PRR15Q8IV56 129 aa2.88□□□□□ -1.95
CUX1-208ENST00000485792 C8orf17Q9NRJ1 99 aa2.88□□□□□ -1.95
CUX1-208ENST00000485792 SPCS1Q9Y6A9 102 aa2.87□□□□□ -1.95
CUX1-208ENST00000485792 MMP24-AS1A0A0U1RRL7 71 aa2.86□□□□□ -1.95
CUX1-208ENST00000485792 K7EP34 96 aa2.86□□□□□ -1.95
CUX1-208ENST00000485792 NREPQ16612 68 aa2.86□□□□□ -1.95
CUX1-208ENST00000485792 C5orf47Q569G3 176 aa2.86□□□□□ -1.95
CUX1-208ENST00000485792 ZCCHC13Q8WW36 166 aaKnown RBP2.86□□□□□ -1.95
CUX1-208ENST00000485792 NDUFB1O75438 58 aa2.85□□□□□ -1.95
CUX1-208ENST00000485792 Q6ZVQ6 151 aa2.85□□□□□ -1.95
CUX1-208ENST00000485792 K7EQZ3 153 aa2.84□□□□□ -1.95
CUX1-208ENST00000485792 TMEM254Q8TBM7 123 aa2.84□□□□□ -1.95
CUX1-208ENST00000485792 F8W1H4 67 aa2.83□□□□□ -1.96
CUX1-208ENST00000485792 MT2AP02795 61 aa2.83□□□□□ -1.96
CUX1-208ENST00000485792 MT1FP04733 61 aa2.83□□□□□ -1.96
CUX1-208ENST00000485792 COX6B2Q6YFQ2 88 aa2.83□□□□□ -1.96
CUX1-208ENST00000485792 SPINK7P58062 85 aa2.82□□□□□ -1.96
CUX1-208ENST00000485792 MRPL34Q9BQ48 92 aaKnown RBP2.82□□□□□ -1.96
CUX1-208ENST00000485792 LINC00846Q9NV44 126 aa2.82□□□□□ -1.96
CUX1-208ENST00000485792 hDV103S1A0JD37 113 aa2.81□□□□□ -1.96
CUX1-208ENST00000485792 Q5W150 140 aa2.81□□□□□ -1.96
CUX1-208ENST00000485792 Q8N9L7 120 aa2.81□□□□□ -1.96
CUX1-208ENST00000485792 BPY2O14599 106 aa2.8□□□□□ -1.96
CUX1-208ENST00000485792 KRTAP10-7P60409 375 aaPredicted RBP2.8□□□□□ -1.96
CUX1-208ENST00000485792 GTF2H5Q6ZYL4 71 aa2.8□□□□□ -1.96
CUX1-208ENST00000485792 M0R2T5 61 aa2.79□□□□□ -1.96
CUX1-208ENST00000485792 ETDBQ3ZM63 59 aa2.79□□□□□ -1.96
CUX1-208ENST00000485792 RBM12B-AS1Q9P1G2 102 aa2.79□□□□□ -1.96
CUX1-208ENST00000485792 FCGBPQ9Y6R7 5405 aaPredicted RBP2.79□□□□□ -1.96
CUX1-208ENST00000485792 MACF1Q9UPN3 7388 aaKnown RBP2.79□□□□□ -1.96
CUX1-208ENST00000485792 WFDC13Q8IUB5 93 aa2.78□□□□□ -1.96
CUX1-208ENST00000485792 CRCT1Q9UGL9 99 aa2.78□□□□□ -1.96
CUX1-208ENST00000485792 SYNE2Q8WXH0 6885 aaKnown RBP2.77□□□□□ -1.97
CUX1-208ENST00000485792 CXCL6P80162 114 aa2.77□□□□□ -1.97
CUX1-208ENST00000485792 UBL5Q9BZL1 73 aa2.77□□□□□ -1.97
CUX1-208ENST00000485792 V9GYY9 64 aa2.77□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms