RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 SPRR2GQ9BYE4 73 aa2.31□□□□□ -2.04
PTPN4-210ENST00000485247 NHP2Q9NX24 153 aaKnown RBP2.31□□□□□ -2.04
PTPN4-210ENST00000485247 PCP4L1A6NKN8 68 aa2.3□□□□□ -2.04
PTPN4-210ENST00000485247 H3BUT2 72 aa2.3□□□□□ -2.04
PTPN4-210ENST00000485247 H1FX-AS1Q4G0G2 97 aa2.3□□□□□ -2.04
PTPN4-210ENST00000485247 A0A087WSZ3 146 aa2.29□□□□□ -2.04
PTPN4-210ENST00000485247 A6NDN8 102 aa2.29□□□□□ -2.04
PTPN4-210ENST00000485247 HERVK_113P61574 105 aa2.29□□□□□ -2.04
PTPN4-210ENST00000485247 Q6ZQY7 126 aa2.29□□□□□ -2.04
PTPN4-210ENST00000485247 ZCCHC13Q8WW36 166 aaKnown RBP2.29□□□□□ -2.04
PTPN4-210ENST00000485247 IGKV4-1P06312 121 aa2.27□□□□□ -2.05
PTPN4-210ENST00000485247 COX19Q49B96 90 aa2.27□□□□□ -2.05
PTPN4-210ENST00000485247 IGHV6-1A0A0B4J1U7 121 aa2.26□□□□□ -2.05
PTPN4-210ENST00000485247 SNAPINO95295 136 aa2.26□□□□□ -2.05
PTPN4-210ENST00000485247 S100PP25815 95 aa2.26□□□□□ -2.05
PTPN4-210ENST00000485247 PLNP26678 52 aa2.26□□□□□ -2.05
PTPN4-210ENST00000485247 LCE1CQ5T751 118 aa2.26□□□□□ -2.05
PTPN4-210ENST00000485247 LCE1BQ5T7P3 118 aa2.26□□□□□ -2.05
PTPN4-210ENST00000485247 LINC00575Q6W349 94 aa2.26□□□□□ -2.05
PTPN4-210ENST00000485247 TEN1Q86WV5 123 aa2.26□□□□□ -2.05
PTPN4-210ENST00000485247 SMIM11BQ8TCY0 68 aa2.26□□□□□ -2.05
PTPN4-210ENST00000485247 PMCHL2Q9BQD1 86 aa2.26□□□□□ -2.05
PTPN4-210ENST00000485247 SNHG12Q9BXW3 62 aa2.26□□□□□ -2.05
PTPN4-210ENST00000485247 hADV29S1A0JD25 119 aa2.25□□□□□ -2.05
PTPN4-210ENST00000485247 TIMM17BO60830 172 aa2.25□□□□□ -2.05
PTPN4-210ENST00000485247 DEFB116Q30KQ4 102 aa2.25□□□□□ -2.05
PTPN4-210ENST00000485247 KRTAP5-10Q6L8G5 202 aa2.25□□□□□ -2.05
PTPN4-210ENST00000485247 TRAPPC1Q9Y5R8 145 aa2.25□□□□□ -2.05
PTPN4-210ENST00000485247 DPM2O94777 84 aa2.24□□□□□ -2.05
PTPN4-210ENST00000485247 IGKCP01834 107 aa2.24□□□□□ -2.05
PTPN4-210ENST00000485247 VAMP3Q15836 100 aa2.24□□□□□ -2.05
PTPN4-210ENST00000485247 C5orf47Q569G3 176 aa2.24□□□□□ -2.05
PTPN4-210ENST00000485247 C3orf79P0CE67 100 aa2.23□□□□□ -2.05
PTPN4-210ENST00000485247 CHCHD1Q96BP2 118 aaKnown RBP2.23□□□□□ -2.05
PTPN4-210ENST00000485247 HIST1H4GQ99525 98 aa2.23□□□□□ -2.05
PTPN4-210ENST00000485247 HSPB8Q9UJY1 196 aa2.23□□□□□ -2.05
PTPN4-210ENST00000485247 LYRM7Q5U5X0 104 aa2.22□□□□□ -2.05
PTPN4-210ENST00000485247 LCE3DQ9BYE3 92 aa2.22□□□□□ -2.05
PTPN4-210ENST00000485247 SPRR5A0A1B0GTR4 108 aa2.21□□□□□ -2.06
PTPN4-210ENST00000485247 HSBP1O75506 76 aa2.21□□□□□ -2.06
PTPN4-210ENST00000485247 LEPROTL1O95214 131 aa2.21□□□□□ -2.06
PTPN4-210ENST00000485247 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.21□□□□□ -2.06
PTPN4-210ENST00000485247 PPDPFLQ8WWR9 84 aa2.21□□□□□ -2.06
PTPN4-210ENST00000485247 TTTY13Q9BZ97 58 aa2.21□□□□□ -2.06
PTPN4-210ENST00000485247 PRO2289Q9P1D8 64 aa2.21□□□□□ -2.06
PTPN4-210ENST00000485247 C8orf87E5RJ46 101 aa2.2□□□□□ -2.06
PTPN4-210ENST00000485247 KLKP1Q107X0 134 aa2.2□□□□□ -2.06
PTPN4-210ENST00000485247 KRTAP5-7Q6L8G8 165 aa2.2□□□□□ -2.06
PTPN4-210ENST00000485247 FABP4P15090 132 aa2.19□□□□□ -2.06
PTPN4-210ENST00000485247 MT4P47944 62 aa2.19□□□□□ -2.06
PTPN4-210ENST00000485247 MT1XP80297 61 aa2.19□□□□□ -2.06
PTPN4-210ENST00000485247 MUSTN1Q8IVN3 82 aa2.19□□□□□ -2.06
PTPN4-210ENST00000485247 IGKV3D-7A0A0C4DH55 119 aa2.18□□□□□ -2.06
PTPN4-210ENST00000485247 A0A1B0GVX0 72 aa2.18□□□□□ -2.06
PTPN4-210ENST00000485247 IFITM1P13164 125 aa2.18□□□□□ -2.06
PTPN4-210ENST00000485247 SCGB1D4Q6XE38 83 aa2.18□□□□□ -2.06
PTPN4-210ENST00000485247 COPS9Q8WXC6 57 aa2.18□□□□□ -2.06
PTPN4-210ENST00000485247 DSCR8Q96T75 97 aa2.18□□□□□ -2.06
PTPN4-210ENST00000485247 LINC00472Q9H8W2 130 aa2.18□□□□□ -2.06
PTPN4-210ENST00000485247 H3BMG7 143 aa2.17□□□□□ -2.06
PTPN4-210ENST00000485247 RAB37Q96AX2 223 aa2.17□□□□□ -2.06
PTPN4-210ENST00000485247 C12orf57Q99622 126 aa2.17□□□□□ -2.06
PTPN4-210ENST00000485247 HMCN1Q96RW7 5635 aa2.17□□□□□ -2.06
PTPN4-210ENST00000485247 LCA10Q71F78 164 aa2.16□□□□□ -2.06
PTPN4-210ENST00000485247 TMEM218A2RU14 115 aa2.15□□□□□ -2.07
PTPN4-210ENST00000485247 TRGC2P03986 189 aa2.15□□□□□ -2.07
PTPN4-210ENST00000485247 CSAG1Q6PB30 78 aa2.15□□□□□ -2.07
PTPN4-210ENST00000485247 PRR15Q8IV56 129 aa2.15□□□□□ -2.07
PTPN4-210ENST00000485247 AHNAK2Q8IVF2 5795 aa2.15□□□□□ -2.07
PTPN4-210ENST00000485247 TRBV7-4A0A0J9YYF1 115 aa2.14□□□□□ -2.07
PTPN4-210ENST00000485247 RBM3P98179 157 aaKnown RBP2.13□□□□□ -2.07
PTPN4-210ENST00000485247 C4orf26Q17RF5 130 aa2.13□□□□□ -2.07
PTPN4-210ENST00000485247 BVES-AS1Q5T3Y7 98 aa2.13□□□□□ -2.07
PTPN4-210ENST00000485247 ANKRD29Q8N6D5 301 aa2.13□□□□□ -2.07
PTPN4-210ENST00000485247 A0A1B0GV72 72 aa2.12□□□□□ -2.07
PTPN4-210ENST00000485247 FABP2P12104 132 aa2.12□□□□□ -2.07
PTPN4-210ENST00000485247 CRIPTQ9P021 101 aa2.12□□□□□ -2.07
PTPN4-210ENST00000485247 S4R3F8 94 aa2.12□□□□□ -2.07
PTPN4-210ENST00000485247 TRACP01848 142 aa2.11□□□□□ -2.07
PTPN4-210ENST00000485247 PP632Q6XCG6 107 aa2.11□□□□□ -2.07
PTPN4-210ENST00000485247 Q8N9L7 120 aa2.11□□□□□ -2.07
PTPN4-210ENST00000485247 SYS1-DBNDD2H3BUS1 97 aa2.1□□□□□ -2.07
PTPN4-210ENST00000485247 CCKP06307 115 aa2.1□□□□□ -2.07
PTPN4-210ENST00000485247 CAMK2N1Q7Z7J9 78 aa2.1□□□□□ -2.07
PTPN4-210ENST00000485247 C8orf17Q9NRJ1 99 aa2.1□□□□□ -2.07
PTPN4-210ENST00000485247 NDUFB1O75438 58 aa2.09□□□□□ -2.07
PTPN4-210ENST00000485247 SNCGO76070 127 aa2.09□□□□□ -2.07
PTPN4-210ENST00000485247 C2orf91Q6ZV80 131 aa2.09□□□□□ -2.07
PTPN4-210ENST00000485247 PLAC4Q8WY50 150 aa2.09□□□□□ -2.07
PTPN4-210ENST00000485247 J3KT08 172 aa2.08□□□□□ -2.08
PTPN4-210ENST00000485247 COA6Q5JTJ3 125 aaKnown RBP2.08□□□□□ -2.08
PTPN4-210ENST00000485247 LINC01545Q5VT33 79 aa2.08□□□□□ -2.08
PTPN4-210ENST00000485247 C7orf65Q6ZTY9 151 aa2.08□□□□□ -2.08
PTPN4-210ENST00000485247 VPS25Q9BRG1 176 aa2.07□□□□□ -2.08
PTPN4-210ENST00000485247 NDUFS5O43920 106 aa2.06□□□□□ -2.08
PTPN4-210ENST00000485247 CLLU1Q5K131 121 aa2.06□□□□□ -2.08
PTPN4-210ENST00000485247 A8MUN3 132 aa2.05□□□□□ -2.08
PTPN4-210ENST00000485247 PDE6GP18545 87 aa2.05□□□□□ -2.08
PTPN4-210ENST00000485247 Q5W150 140 aa2.05□□□□□ -2.08
PTPN4-210ENST00000485247 YPEL4Q96NS1 127 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 153.9 ms