RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 KRTAP4-1Q9BYQ7 146 aa8.54□□□□□ -1.04
UPF3A-208ENST00000484246 LINC00472Q9H8W2 130 aa8.54□□□□□ -1.04
UPF3A-208ENST00000484246 Q6ZQT0 140 aa8.53□□□□□ -1.04
UPF3A-208ENST00000484246 PCOTHQ58A44 107 aa8.52□□□□□ -1.05
UPF3A-208ENST00000484246 Q75L30 129 aa8.51□□□□□ -1.05
UPF3A-208ENST00000484246 VPS25Q9BRG1 176 aa8.51□□□□□ -1.05
UPF3A-208ENST00000484246 SIGMAR1Q99720 223 aa8.5□□□□□ -1.05
UPF3A-208ENST00000484246 SPCS1Q9Y6A9 102 aa8.49□□□□□ -1.05
UPF3A-208ENST00000484246 IGKV4-1P06312 121 aa8.48□□□□□ -1.05
UPF3A-208ENST00000484246 C20orf166-AS1Q96NR2 134 aa8.47□□□□□ -1.05
UPF3A-208ENST00000484246 C14orf132Q9NPU4 83 aa8.47□□□□□ -1.05
UPF3A-208ENST00000484246 A8MUU9 505 aa8.44□□□□□ -1.06
UPF3A-208ENST00000484246 J3KT08 172 aa8.44□□□□□ -1.06
UPF3A-208ENST00000484246 LCE3BQ5TA77 95 aa8.43□□□□□ -1.06
UPF3A-208ENST00000484246 MTURNQ8N3F0 131 aa8.43□□□□□ -1.06
UPF3A-208ENST00000484246 DSCR10P59022 87 aa8.42□□□□□ -1.06
UPF3A-208ENST00000484246 K7EP34 96 aa8.41□□□□□ -1.06
UPF3A-208ENST00000484246 DEFB116Q30KQ4 102 aa8.41□□□□□ -1.06
UPF3A-208ENST00000484246 KRTAP16-1A8MUX0 517 aa8.4□□□□□ -1.06
UPF3A-208ENST00000484246 LINC00313P59037 77 aa8.4□□□□□ -1.06
UPF3A-208ENST00000484246 A0A1B0GVX0 72 aa8.39□□□□□ -1.07
UPF3A-208ENST00000484246 PCP4L1A6NKN8 68 aa8.39□□□□□ -1.07
UPF3A-208ENST00000484246 C8orf87E5RJ46 101 aa8.39□□□□□ -1.07
UPF3A-208ENST00000484246 PRO0461Q9UI25 63 aa8.39□□□□□ -1.07
UPF3A-208ENST00000484246 ATP11AUNQ6ZP68 121 aa8.38□□□□□ -1.07
UPF3A-208ENST00000484246 KRTAP19-2Q3LHN2 52 aa8.36□□□□□ -1.07
UPF3A-208ENST00000484246 NOTCH2NLQ7Z3S9 236 aa8.36□□□□□ -1.07
UPF3A-208ENST00000484246 IGHV6-1A0A0B4J1U7 121 aa8.35□□□□□ -1.07
UPF3A-208ENST00000484246 A8MWP4 228 aa8.34□□□□□ -1.07
UPF3A-208ENST00000484246 NDUFB1O75438 58 aa8.32□□□□□ -1.08
UPF3A-208ENST00000484246 NREPQ16612 68 aa8.32□□□□□ -1.08
UPF3A-208ENST00000484246 GTF2H5Q6ZYL4 71 aa8.32□□□□□ -1.08
UPF3A-208ENST00000484246 IGKV3D-7A0A0C4DH55 119 aa8.29□□□□□ -1.08
UPF3A-208ENST00000484246 FSIP2Q5CZC0 6907 aa8.29□□□□□ -1.08
UPF3A-208ENST00000484246 KRTAP19-4Q3LI73 84 aa8.28□□□□□ -1.08
UPF3A-208ENST00000484246 PRR15Q8IV56 129 aa8.27□□□□□ -1.09
UPF3A-208ENST00000484246 KRTAP9-9Q9BYP9 154 aa8.26□□□□□ -1.09
UPF3A-208ENST00000484246 KRTAP9-4Q9BYQ2 154 aa8.26□□□□□ -1.09
UPF3A-208ENST00000484246 C8orf17Q9NRJ1 99 aa8.26□□□□□ -1.09
UPF3A-208ENST00000484246 F8W1H4 67 aa8.25□□□□□ -1.09
UPF3A-208ENST00000484246 Q8N9P0 234 aaPredicted RBP8.24□□□□□ -1.09
UPF3A-208ENST00000484246 Q6ZVQ6 151 aa8.23□□□□□ -1.09
UPF3A-208ENST00000484246 BPY2O14599 106 aa8.2□□□□□ -1.1
UPF3A-208ENST00000484246 MMP24-AS1A0A0U1RRL7 71 aa8.19□□□□□ -1.1
UPF3A-208ENST00000484246 MT1HP80294 61 aa8.19□□□□□ -1.1
UPF3A-208ENST00000484246 K7EQZ3 153 aa8.18□□□□□ -1.1
UPF3A-208ENST00000484246 TMEM254Q8TBM7 123 aa8.17□□□□□ -1.1
UPF3A-208ENST00000484246 ZCCHC13Q8WW36 166 aaKnown RBP8.17□□□□□ -1.1
UPF3A-208ENST00000484246 LINC00846Q9NV44 126 aa8.17□□□□□ -1.1
UPF3A-208ENST00000484246 ETDBQ3ZM63 59 aa8.16□□□□□ -1.1
UPF3A-208ENST00000484246 CRCT1Q9UGL9 99 aa8.16□□□□□ -1.1
UPF3A-208ENST00000484246 UBL5Q9BZL1 73 aa8.15□□□□□ -1.1
UPF3A-208ENST00000484246 COX6B2Q6YFQ2 88 aa8.14□□□□□ -1.11
UPF3A-208ENST00000484246 MRPL34Q9BQ48 92 aaKnown RBP8.13□□□□□ -1.11
UPF3A-208ENST00000484246 hDV103S1A0JD37 113 aa8.12□□□□□ -1.11
UPF3A-208ENST00000484246 LCE4AQ5TA78 99 aa8.11□□□□□ -1.11
UPF3A-208ENST00000484246 MPLKIPQ8TAP9 179 aa8.1□□□□□ -1.11
UPF3A-208ENST00000484246 HRES1P13985 223 aa8.09□□□□□ -1.11
UPF3A-208ENST00000484246 Q8N9L7 120 aa8.07□□□□□ -1.12
UPF3A-208ENST00000484246 FLGP20930 4061 aaPredicted RBP8.05□□□□□ -1.12
UPF3A-208ENST00000484246 KRTAP4-8A0A0G2JLE6 195 aa8.04□□□□□ -1.12
UPF3A-208ENST00000484246 SPINK7P58062 85 aa8.04□□□□□ -1.12
UPF3A-208ENST00000484246 CXCL6P80162 114 aa8.04□□□□□ -1.12
UPF3A-208ENST00000484246 FAM240AA0A1B0GVK7 77 aa8.03□□□□□ -1.12
UPF3A-208ENST00000484246 CASC2Q6XLA1 102 aa8.03□□□□□ -1.12
UPF3A-208ENST00000484246 ACYP1P07311 99 aa8.02□□□□□ -1.13
UPF3A-208ENST00000484246 KRTAP9-7A8MTY7 169 aa8.01□□□□□ -1.13
UPF3A-208ENST00000484246 RBM12B-AS1Q9P1G2 102 aa8.01□□□□□ -1.13
UPF3A-208ENST00000484246 WFDC13Q8IUB5 93 aa8□□□□□ -1.13
UPF3A-208ENST00000484246 HCG22E2RYF7 251 aa7.99□□□□□ -1.13
UPF3A-208ENST00000484246 KRTAP10-6P60371 365 aaPredicted RBP7.99□□□□□ -1.13
UPF3A-208ENST00000484246 A0A1B0GV90 55 aa7.98□□□□□ -1.13
UPF3A-208ENST00000484246 NDUFS5O43920 106 aa7.98□□□□□ -1.13
UPF3A-208ENST00000484246 M0R2T5 61 aa7.97□□□□□ -1.13
UPF3A-208ENST00000484246 FAM236DA0A1B0GTK5 79 aa7.95□□□□□ -1.14
UPF3A-208ENST00000484246 FAM236CP0DP71 79 aa7.95□□□□□ -1.14
UPF3A-208ENST00000484246 ATP5EP2Q5VTU8 51 aa7.93□□□□□ -1.14
UPF3A-208ENST00000484246 Q5W150 140 aa7.93□□□□□ -1.14
UPF3A-208ENST00000484246 LCE1DQ5T752 114 aa7.91□□□□□ -1.14
UPF3A-208ENST00000484246 C7orf65Q6ZTY9 151 aa7.89□□□□□ -1.15
UPF3A-208ENST00000484246 TP53AIP1Q9HCN2 124 aa7.86□□□□□ -1.15
UPF3A-208ENST00000484246 IGKV2D-30A0A075B6S6 120 aa7.84□□□□□ -1.15
UPF3A-208ENST00000484246 IGKV2-30P06310 120 aa7.84□□□□□ -1.15
UPF3A-208ENST00000484246 LINC00643Q86TS7 51 aa7.83□□□□□ -1.16
UPF3A-208ENST00000484246 KRTAP9-8Q9BYQ0 159 aa7.79□□□□□ -1.16
UPF3A-208ENST00000484246 J3QR89 54 aa7.77□□□□□ -1.17
UPF3A-208ENST00000484246 HIST1H4AP62805 103 aaKnown RBP7.75□□□□□ -1.17
UPF3A-208ENST00000484246 KRTAP3-1Q9BYR8 98 aa7.75□□□□□ -1.17
UPF3A-208ENST00000484246 H1FX-AS1Q4G0G2 97 aa7.74□□□□□ -1.17
UPF3A-208ENST00000484246 KRTAP4-7Q9BYR0 210 aa7.73□□□□□ -1.17
UPF3A-208ENST00000484246 TRAV22A0A0B4J277 110 aa7.7□□□□□ -1.18
UPF3A-208ENST00000484246 MT2AP02795 61 aa7.7□□□□□ -1.18
UPF3A-208ENST00000484246 A0A087WVE0 104 aa7.68□□□□□ -1.18
UPF3A-208ENST00000484246 UQCRQO14949 82 aa7.68□□□□□ -1.18
UPF3A-208ENST00000484246 C4orf26Q17RF5 130 aa7.68□□□□□ -1.18
UPF3A-208ENST00000484246 KRTAP9-3Q9BYQ3 159 aa7.68□□□□□ -1.18
UPF3A-208ENST00000484246 LOC101927531A0A1B0GV80 90 aa7.65□□□□□ -1.18
UPF3A-208ENST00000484246 KRTAP4-9Q9BYQ8 210 aa7.65□□□□□ -1.18
UPF3A-208ENST00000484246 CYP4F30PQ9H0H9 118 aa7.64□□□□□ -1.19
UPF3A-208ENST00000484246 MT1FP04733 61 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 246.3 ms