RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 H3BMG7 143 aa2.14□□□□□ -2.07
VPS13D-208ENST00000481484 COX6CP09669 75 aa2.14□□□□□ -2.07
VPS13D-208ENST00000481484 SPATA45Q537H7 98 aa2.14□□□□□ -2.07
VPS13D-208ENST00000481484 Q96NJ1 140 aa2.14□□□□□ -2.07
VPS13D-208ENST00000481484 ORMDL1Q9P0S3 153 aa2.14□□□□□ -2.07
VPS13D-208ENST00000481484 PRO1854Q9UHT4 67 aa2.14□□□□□ -2.07
VPS13D-208ENST00000481484 A0A0A0MQY5 61 aa2.13□□□□□ -2.07
VPS13D-208ENST00000481484 TMEM256-PLSCR3K7ERE1 68 aa2.13□□□□□ -2.07
VPS13D-208ENST00000481484 TRACP01848 142 aa2.13□□□□□ -2.07
VPS13D-208ENST00000481484 FABP2P12104 132 aa2.13□□□□□ -2.07
VPS13D-208ENST00000481484 HSD52Q0P140 79 aa2.13□□□□□ -2.07
VPS13D-208ENST00000481484 CEND1Q8N111 149 aa2.13□□□□□ -2.07
VPS13D-208ENST00000481484 SVIPQ8NHG7 77 aa2.13□□□□□ -2.07
VPS13D-208ENST00000481484 RBM12B-AS1Q9P1G2 102 aa2.13□□□□□ -2.07
VPS13D-208ENST00000481484 PAM16Q9Y3D7 125 aa2.13□□□□□ -2.07
VPS13D-208ENST00000481484 FAM236DA0A1B0GTK5 79 aa2.12□□□□□ -2.07
VPS13D-208ENST00000481484 C8orf87E5RJ46 101 aa2.12□□□□□ -2.07
VPS13D-208ENST00000481484 FAM236CP0DP71 79 aa2.12□□□□□ -2.07
VPS13D-208ENST00000481484 LINC00313P59037 77 aa2.12□□□□□ -2.07
VPS13D-208ENST00000481484 UBE2V1Q13404 147 aa2.12□□□□□ -2.07
VPS13D-208ENST00000481484 C2orf91Q6ZV80 131 aa2.12□□□□□ -2.07
VPS13D-208ENST00000481484 MTURNQ8N3F0 131 aa2.12□□□□□ -2.07
VPS13D-208ENST00000481484 ANKRD29Q8N6D5 301 aa2.12□□□□□ -2.07
VPS13D-208ENST00000481484 FAM218AQ96MZ4 157 aa2.12□□□□□ -2.07
VPS13D-208ENST00000481484 A0A1W2PNM2 257 aa2.11□□□□□ -2.07
VPS13D-208ENST00000481484 J3KT08 172 aa2.11□□□□□ -2.07
VPS13D-208ENST00000481484 CCKP06307 115 aa2.11□□□□□ -2.07
VPS13D-208ENST00000481484 IGKV4-1P06312 121 aa2.11□□□□□ -2.07
VPS13D-208ENST00000481484 PSMB2P49721 201 aa2.11□□□□□ -2.07
VPS13D-208ENST00000481484 FXYD2P54710 66 aa2.11□□□□□ -2.07
VPS13D-208ENST00000481484 C14orf144Q96I85 54 aa2.11□□□□□ -2.07
VPS13D-208ENST00000481484 A0A1B0GVX0 72 aa2.1□□□□□ -2.07
VPS13D-208ENST00000481484 A0A1B0GW54 56 aa2.1□□□□□ -2.07
VPS13D-208ENST00000481484 KRTAP16-1A8MUX0 517 aa2.1□□□□□ -2.07
VPS13D-208ENST00000481484 DSCR10P59022 87 aa2.1□□□□□ -2.07
VPS13D-208ENST00000481484 DSCR8Q96T75 97 aa2.09□□□□□ -2.07
VPS13D-208ENST00000481484 LINC00472Q9H8W2 130 aa2.09□□□□□ -2.07
VPS13D-208ENST00000481484 UQCR10Q9UDW1 63 aa2.09□□□□□ -2.07
VPS13D-208ENST00000481484 SSPOA2VEC9 5147 aa2.08□□□□□ -2.08
VPS13D-208ENST00000481484 USH2AO75445 5202 aa2.08□□□□□ -2.08
VPS13D-208ENST00000481484 IGHV6-1A0A0B4J1U7 121 aa2.08□□□□□ -2.08
VPS13D-208ENST00000481484 NDUFB1O75438 58 aa2.08□□□□□ -2.08
VPS13D-208ENST00000481484 PDE6GP18545 87 aa2.08□□□□□ -2.08
VPS13D-208ENST00000481484 RBM3P98179 157 aaKnown RBP2.08□□□□□ -2.08
VPS13D-208ENST00000481484 LYRM7Q5U5X0 104 aa2.08□□□□□ -2.08
VPS13D-208ENST00000481484 LINC00846Q9NV44 126 aa2.08□□□□□ -2.08
VPS13D-208ENST00000481484 C9JAW5 83 aa2.07□□□□□ -2.08
VPS13D-208ENST00000481484 JMJD7-PLA2G4BH0Y9G9 81 aa2.07□□□□□ -2.08
VPS13D-208ENST00000481484 K7ERJ3 54 aa2.07□□□□□ -2.08
VPS13D-208ENST00000481484 M0R143 59 aa2.07□□□□□ -2.08
VPS13D-208ENST00000481484 HRES1P13985 223 aa2.07□□□□□ -2.08
VPS13D-208ENST00000481484 ZCCHC13Q8WW36 166 aaKnown RBP2.07□□□□□ -2.08
VPS13D-208ENST00000481484 VPS25Q9BRG1 176 aa2.07□□□□□ -2.08
VPS13D-208ENST00000481484 LOC110117498A0A087WWA1 95 aa2.06□□□□□ -2.08
VPS13D-208ENST00000481484 A0A1B0GV72 72 aa2.06□□□□□ -2.08
VPS13D-208ENST00000481484 A8MWP4 228 aa2.06□□□□□ -2.08
VPS13D-208ENST00000481484 MT2AP02795 61 aa2.06□□□□□ -2.08
VPS13D-208ENST00000481484 PYY3Q5JQD4 70 aa2.06□□□□□ -2.08
VPS13D-208ENST00000481484 SCGB1C2P0DMR2 95 aa2.05□□□□□ -2.08
VPS13D-208ENST00000481484 ATXN8Q156A1 80 aa2.05□□□□□ -2.08
VPS13D-208ENST00000481484 Q6ZQT0 140 aa2.05□□□□□ -2.08
VPS13D-208ENST00000481484 MACF1Q9UPN3 7388 aaKnown RBP2.05□□□□□ -2.08
VPS13D-208ENST00000481484 NOTCH2NLQ7Z3S9 236 aa2.04□□□□□ -2.08
VPS13D-208ENST00000481484 C8orf17Q9NRJ1 99 aa2.04□□□□□ -2.08
VPS13D-208ENST00000481484 FCGBPQ9Y6R7 5405 aaPredicted RBP2.04□□□□□ -2.08
VPS13D-208ENST00000481484 MT1FP04733 61 aa2.03□□□□□ -2.08
VPS13D-208ENST00000481484 BAALC-AS2P0C853 105 aa2.03□□□□□ -2.08
VPS13D-208ENST00000481484 SPINK7P58062 85 aa2.03□□□□□ -2.08
VPS13D-208ENST00000481484 KRTAP10-10P60014 251 aa2.03□□□□□ -2.08
VPS13D-208ENST00000481484 KRTAP10-5P60370 271 aa2.03□□□□□ -2.08
VPS13D-208ENST00000481484 Q6ZVQ6 151 aa2.03□□□□□ -2.08
VPS13D-208ENST00000481484 WFDC13Q8IUB5 93 aa2.03□□□□□ -2.08
VPS13D-208ENST00000481484 TMEM254Q8TBM7 123 aa2.03□□□□□ -2.08
VPS13D-208ENST00000481484 IGKV3D-7A0A0C4DH55 119 aa2.02□□□□□ -2.09
VPS13D-208ENST00000481484 DEFB116Q30KQ4 102 aa2.02□□□□□ -2.09
VPS13D-208ENST00000481484 PRR15Q8IV56 129 aa2.02□□□□□ -2.09
VPS13D-208ENST00000481484 H3BT86 120 aa2.01□□□□□ -2.09
VPS13D-208ENST00000481484 SMIM6P0DI80 62 aa2.01□□□□□ -2.09
VPS13D-208ENST00000481484 C7orf65Q6ZTY9 151 aa2.01□□□□□ -2.09
VPS13D-208ENST00000481484 MRPL34Q9BQ48 92 aaKnown RBP2.01□□□□□ -2.09
VPS13D-208ENST00000481484 MMP24-AS1A0A0U1RRL7 71 aa2□□□□□ -2.09
VPS13D-208ENST00000481484 hDV103S1A0JD37 113 aa2□□□□□ -2.09
VPS13D-208ENST00000481484 NREPQ16612 68 aa2□□□□□ -2.09
VPS13D-208ENST00000481484 LCE1FQ5T754 118 aa2□□□□□ -2.09
VPS13D-208ENST00000481484 C14orf132Q9NPU4 83 aa2□□□□□ -2.09
VPS13D-208ENST00000481484 TSTD3H0UI37 97 aa1.99□□□□□ -2.09
VPS13D-208ENST00000481484 KRTAP10-12P60413 245 aa1.99□□□□□ -2.09
VPS13D-208ENST00000481484 KRTAP19-6Q3LI70 58 aa1.99□□□□□ -2.09
VPS13D-208ENST00000481484 H1FX-AS1Q4G0G2 97 aa1.99□□□□□ -2.09
VPS13D-208ENST00000481484 SYNE2Q8WXH0 6885 aaKnown RBP1.99□□□□□ -2.09
VPS13D-208ENST00000481484 BPY2O14599 106 aa1.98□□□□□ -2.09
VPS13D-208ENST00000481484 CXCL6P80162 114 aa1.98□□□□□ -2.09
VPS13D-208ENST00000481484 K7EQZ3 153 aa1.97□□□□□ -2.09
VPS13D-208ENST00000481484 NDUFS5O43920 106 aa1.97□□□□□ -2.09
VPS13D-208ENST00000481484 KRTAP9-6A8MVA2 160 aa1.96□□□□□ -2.1
VPS13D-208ENST00000481484 A0A1W2PPM0 123 aa1.95□□□□□ -2.1
VPS13D-208ENST00000481484 CASC2Q6XLA1 102 aa1.95□□□□□ -2.1
VPS13D-208ENST00000481484 NAA38Q9BRA0 125 aaKnown RBP1.95□□□□□ -2.1
VPS13D-208ENST00000481484 HCG22E2RYF7 251 aa1.94□□□□□ -2.1
VPS13D-208ENST00000481484 Q5W150 140 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms