RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 IGKV2D-28P01615 120 aa3.87□□□□□ -1.79
SF3B1-209ENST00000479532 UBE2AP49459 152 aa3.87□□□□□ -1.79
SF3B1-209ENST00000479532 ELOF1P60002 83 aaKnown RBP3.87□□□□□ -1.79
SF3B1-209ENST00000479532 C9orf129Q5T035 196 aaKnown RBP3.87□□□□□ -1.79
SF3B1-209ENST00000479532 LINC00337Q8N6G1 96 aa3.87□□□□□ -1.79
SF3B1-209ENST00000479532 LIMD2Q9BT23 127 aa3.87□□□□□ -1.79
SF3B1-209ENST00000479532 LRP1BQ9NZR2 4599 aa3.86□□□□□ -1.79
SF3B1-209ENST00000479532 FAM168BA1KXE4 195 aa3.86□□□□□ -1.79
SF3B1-209ENST00000479532 NCR3O14931 201 aa3.86□□□□□ -1.79
SF3B1-209ENST00000479532 SMR3BP02814 79 aaPredicted RBP3.86□□□□□ -1.79
SF3B1-209ENST00000479532 RPL37AP61513 92 aaKnown RBP3.86□□□□□ -1.79
SF3B1-209ENST00000479532 ASB16-AS1Q495Z4 193 aa3.86□□□□□ -1.79
SF3B1-209ENST00000479532 OCR1Q9BZK8 76 aa3.86□□□□□ -1.79
SF3B1-209ENST00000479532 RBM12B-AS1Q9P1G2 102 aa3.86□□□□□ -1.79
SF3B1-209ENST00000479532 BPY2O14599 106 aa3.85□□□□□ -1.79
SF3B1-209ENST00000479532 SNURFQ9Y675 71 aa3.85□□□□□ -1.79
SF3B1-209ENST00000479532 M0R378 163 aa3.84□□□□□ -1.79
SF3B1-209ENST00000479532 Q5VSD8 79 aa3.84□□□□□ -1.79
SF3B1-209ENST00000479532 DNAH8Q96JB1 4490 aa3.84□□□□□ -1.8
SF3B1-209ENST00000479532 FAM229BQ4G0N7 80 aa3.83□□□□□ -1.8
SF3B1-209ENST00000479532 DIRC1Q969H9 104 aa3.83□□□□□ -1.8
SF3B1-209ENST00000479532 RYR1P21817 5038 aa3.82□□□□□ -1.8
SF3B1-209ENST00000479532 APOBP04114 4563 aaKnown RBP3.82□□□□□ -1.8
SF3B1-209ENST00000479532 TRAV22A0A0B4J277 110 aa3.82□□□□□ -1.8
SF3B1-209ENST00000479532 PRR3P79522 188 aaKnown RBP3.82□□□□□ -1.8
SF3B1-209ENST00000479532 C1orf137Q5JT78 98 aa3.82□□□□□ -1.8
SF3B1-209ENST00000479532 C7orf65Q6ZTY9 151 aa3.82□□□□□ -1.8
SF3B1-209ENST00000479532 LCA10Q71F78 164 aa3.82□□□□□ -1.8
SF3B1-209ENST00000479532 SPANXA2-OT1Q8N9U9 137 aa3.82□□□□□ -1.8
SF3B1-209ENST00000479532 ZCCHC13Q8WW36 166 aaKnown RBP3.82□□□□□ -1.8
SF3B1-209ENST00000479532 RPL37AP8A6NKH3 93 aa3.81□□□□□ -1.8
SF3B1-209ENST00000479532 H3BPC8 53 aa3.81□□□□□ -1.8
SF3B1-209ENST00000479532 KRTAP7-1Q8IUC3 87 aa3.81□□□□□ -1.8
SF3B1-209ENST00000479532 Q9BRP9 147 aa3.81□□□□□ -1.8
SF3B1-209ENST00000479532 PSORS1C2Q9UIG4 136 aa3.81□□□□□ -1.8
SF3B1-209ENST00000479532 IGLV1-50A0A075B6I6 118 aa3.8□□□□□ -1.8
SF3B1-209ENST00000479532 LOC101927531A0A1B0GV80 90 aa3.8□□□□□ -1.8
SF3B1-209ENST00000479532 A6NN06 94 aa3.8□□□□□ -1.8
SF3B1-209ENST00000479532 ZNF73O43830 326 aaPredicted RBP3.8□□□□□ -1.8
SF3B1-209ENST00000479532 REG3GQ6UW15 175 aa3.8□□□□□ -1.8
SF3B1-209ENST00000479532 LINC00575Q6W349 94 aa3.8□□□□□ -1.8
SF3B1-209ENST00000479532 ETDCA0A1B0GVM5 59 aa3.79□□□□□ -1.8
SF3B1-209ENST00000479532 IGLV7-43P04211 117 aa3.79□□□□□ -1.8
SF3B1-209ENST00000479532 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.79□□□□□ -1.8
SF3B1-209ENST00000479532 NOTCH2NLQ7Z3S9 236 aa3.79□□□□□ -1.8
SF3B1-209ENST00000479532 Q8NDZ9 215 aa3.79□□□□□ -1.8
SF3B1-209ENST00000479532 C1orf64Q8NEQ6 169 aa3.79□□□□□ -1.8
SF3B1-209ENST00000479532 KIAA1109Q2LD37 5005 aa3.79□□□□□ -1.8
SF3B1-209ENST00000479532 COX7BP24311 80 aa3.78□□□□□ -1.8
SF3B1-209ENST00000479532 Q5VV11 94 aa3.78□□□□□ -1.8
SF3B1-209ENST00000479532 SPINK6Q6UWN8 80 aa3.78□□□□□ -1.8
SF3B1-209ENST00000479532 KCNQ1DNQ9H478 68 aa3.78□□□□□ -1.8
SF3B1-209ENST00000479532 CDC42SE1Q9NRR8 79 aa3.78□□□□□ -1.8
SF3B1-209ENST00000479532 HSPG2P98160 4391 aa3.78□□□□□ -1.8
SF3B1-209ENST00000479532 C8orf87E5RJ46 101 aa3.77□□□□□ -1.81
SF3B1-209ENST00000479532 ZNF861PO60384 105 aa3.77□□□□□ -1.81
SF3B1-209ENST00000479532 IGLV6-57P01721 117 aa3.77□□□□□ -1.81
SF3B1-209ENST00000479532 IGKV4-1P06312 121 aa3.77□□□□□ -1.81
SF3B1-209ENST00000479532 HERC2O95714 4834 aa3.76□□□□□ -1.81
SF3B1-209ENST00000479532 KRTAP11-1Q8IUC1 163 aa3.76□□□□□ -1.81
SF3B1-209ENST00000479532 H0Y9J4 135 aa3.75□□□□□ -1.81
SF3B1-209ENST00000479532 SPRR1AP35321 89 aa3.75□□□□□ -1.81
SF3B1-209ENST00000479532 KRTAP10-4P60372 401 aaPredicted RBP3.75□□□□□ -1.81
SF3B1-209ENST00000479532 PRLHP81277 87 aa3.74□□□□□ -1.81
SF3B1-209ENST00000479532 HIGD2AQ9BW72 106 aa3.74□□□□□ -1.81
SF3B1-209ENST00000479532 ZNF706Q9Y5V0 76 aaPredicted RBP3.74□□□□□ -1.81
SF3B1-209ENST00000479532 VPS13BQ7Z7G8 4022 aa3.73□□□□□ -1.81
SF3B1-209ENST00000479532 HCG22E2RYF7 251 aa3.73□□□□□ -1.81
SF3B1-209ENST00000479532 C6orf99Q4VX62 202 aa3.73□□□□□ -1.81
SF3B1-209ENST00000479532 Q6ZRX8 168 aa3.73□□□□□ -1.81
SF3B1-209ENST00000479532 DHRS4-AS1Q9P1J3 65 aa3.73□□□□□ -1.81
SF3B1-209ENST00000479532 A8MUN3 132 aa3.72□□□□□ -1.81
SF3B1-209ENST00000479532 KRTAP4-16G5E9R7 235 aaPredicted RBP3.72□□□□□ -1.81
SF3B1-209ENST00000479532 KRTAP13-1Q8IUC0 172 aa3.72□□□□□ -1.81
SF3B1-209ENST00000479532 KRTAP9-6A8MVA2 160 aa3.71□□□□□ -1.82
SF3B1-209ENST00000479532 CHKB-CPT1BH3BT56 60 aa3.71□□□□□ -1.82
SF3B1-209ENST00000479532 PSPHP1O15172 72 aa3.71□□□□□ -1.82
SF3B1-209ENST00000479532 KRTAP10-5P60370 271 aa3.71□□□□□ -1.82
SF3B1-209ENST00000479532 FAT1Q14517 4588 aa3.71□□□□□ -1.82
SF3B1-209ENST00000479532 LINC00208Q96KT6 92 aa3.7□□□□□ -1.82
SF3B1-209ENST00000479532 IGLV7-46A0A075B6I9 117 aa3.69□□□□□ -1.82
SF3B1-209ENST00000479532 MP68P56378 58 aa3.69□□□□□ -1.82
SF3B1-209ENST00000479532 LINC01558Q9Y6Z2 57 aa3.69□□□□□ -1.82
SF3B1-209ENST00000479532 PKHD1L1Q86WI1 4243 aa3.68□□□□□ -1.82
SF3B1-209ENST00000479532 IGLV5-48A0A075B6I7 105 aa3.68□□□□□ -1.82
SF3B1-209ENST00000479532 LINC01554Q52M75 96 aa3.68□□□□□ -1.82
SF3B1-209ENST00000479532 Q6ZQY7 126 aa3.68□□□□□ -1.82
SF3B1-209ENST00000479532 SPRR4Q96PI1 79 aa3.68□□□□□ -1.82
SF3B1-209ENST00000479532 A6NED7 52 aa3.67□□□□□ -1.82
SF3B1-209ENST00000479532 CASC2Q6XLA1 102 aa3.67□□□□□ -1.82
SF3B1-209ENST00000479532 SRRM2Q9UQ35 2752 aaKnown RBP3.67□□□□□ -1.82
SF3B1-209ENST00000479532 ABCA13Q86UQ4 5058 aa3.67□□□□□ -1.82
SF3B1-209ENST00000479532 KRTAP1-4P0C5Y4 121 aa3.66□□□□□ -1.82
SF3B1-209ENST00000479532 MT3P25713 68 aa3.66□□□□□ -1.82
SF3B1-209ENST00000479532 LINC00483Q53H64 154 aa3.66□□□□□ -1.82
SF3B1-209ENST00000479532 DEFB105AQ8NG35 78 aa3.66□□□□□ -1.82
SF3B1-209ENST00000479532 TYMSOSQ8TAI1 123 aa3.66□□□□□ -1.82
SF3B1-209ENST00000479532 Q8NBF4 154 aa3.65□□□□□ -1.83
SF3B1-209ENST00000479532 PRR15LQ9BU68 103 aa3.65□□□□□ -1.83
SF3B1-209ENST00000479532 MOBPQ13875 183 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms