RNA–Protein interactions for RNA: ENST00000478603.5

C9orf3-216, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 802 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-216ENST00000478603 MT2AP02795 61 aa11.37□□□□□ -0.59
C9orf3-216ENST00000478603 DSCR8Q96T75 97 aa11.37□□□□□ -0.59
C9orf3-216ENST00000478603 C8orf87E5RJ46 101 aa11.36□□□□□ -0.59
C9orf3-216ENST00000478603 TMA7Q9Y2S6 64 aaKnown RBP11.36□□□□□ -0.59
C9orf3-216ENST00000478603 USH2AO75445 5202 aa11.35□□□□□ -0.59
C9orf3-216ENST00000478603 BAALC-AS2P0C853 105 aa11.33□□□□□ -0.6
C9orf3-216ENST00000478603 C9JAW5 83 aa11.3□□□□□ -0.6
C9orf3-216ENST00000478603 SSPOA2VEC9 5147 aa11.3□□□□□ -0.6
C9orf3-216ENST00000478603 MT1FP04733 61 aa11.29□□□□□ -0.6
C9orf3-216ENST00000478603 Q6ZQT0 140 aa11.27□□□□□ -0.61
C9orf3-216ENST00000478603 ZCCHC13Q8WW36 166 aaKnown RBP11.27□□□□□ -0.61
C9orf3-216ENST00000478603 J3KT08 172 aa11.26□□□□□ -0.61
C9orf3-216ENST00000478603 NAA38Q9BRA0 125 aaKnown RBP11.23□□□□□ -0.61
C9orf3-216ENST00000478603 SPINK7P58062 85 aa11.22□□□□□ -0.61
C9orf3-216ENST00000478603 C21orf62-AS1Q17RA5 79 aa11.22□□□□□ -0.61
C9orf3-216ENST00000478603 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.21□□□□□ -0.61
C9orf3-216ENST00000478603 KRTAP10-10P60014 251 aa11.21□□□□□ -0.61
C9orf3-216ENST00000478603 LCE2BO14633 110 aa11.2□□□□□ -0.62
C9orf3-216ENST00000478603 NDUFB1O75438 58 aa11.19□□□□□ -0.62
C9orf3-216ENST00000478603 MTURNQ8N3F0 131 aa11.19□□□□□ -0.62
C9orf3-216ENST00000478603 KRTAP9-3Q9BYQ3 159 aa11.19□□□□□ -0.62
C9orf3-216ENST00000478603 ATXN8Q156A1 80 aa11.18□□□□□ -0.62
C9orf3-216ENST00000478603 Q8N9P0 234 aaPredicted RBP11.18□□□□□ -0.62
C9orf3-216ENST00000478603 C8orf17Q9NRJ1 99 aa11.16□□□□□ -0.62
C9orf3-216ENST00000478603 JMJD7-PLA2G4BH0Y9G9 81 aa11.15□□□□□ -0.62
C9orf3-216ENST00000478603 LOC110117498A0A087WWA1 95 aa11.14□□□□□ -0.63
C9orf3-216ENST00000478603 A8MWP4 228 aa11.14□□□□□ -0.63
C9orf3-216ENST00000478603 M0R143 59 aa11.13□□□□□ -0.63
C9orf3-216ENST00000478603 IGKV3D-7A0A0C4DH55 119 aa11.12□□□□□ -0.63
C9orf3-216ENST00000478603 KRTAP9-7A8MTY7 169 aa11.12□□□□□ -0.63
C9orf3-216ENST00000478603 LYRM7Q5U5X0 104 aa11.11□□□□□ -0.63
C9orf3-216ENST00000478603 C14orf132Q9NPU4 83 aa11.11□□□□□ -0.63
C9orf3-216ENST00000478603 A0A1B0GW54 56 aa11.08□□□□□ -0.64
C9orf3-216ENST00000478603 KRTAP19-1Q8IUB9 90 aa11.08□□□□□ -0.64
C9orf3-216ENST00000478603 WFDC13Q8IUB5 93 aa11.07□□□□□ -0.64
C9orf3-216ENST00000478603 PDE6GP18545 87 aa11.06□□□□□ -0.64
C9orf3-216ENST00000478603 Q6ZVQ6 151 aa11.06□□□□□ -0.64
C9orf3-216ENST00000478603 FCGBPQ9Y6R7 5405 aaPredicted RBP11.05□□□□□ -0.64
C9orf3-216ENST00000478603 PRR15Q8IV56 129 aa11.02□□□□□ -0.65
C9orf3-216ENST00000478603 NREPQ16612 68 aa11□□□□□ -0.65
C9orf3-216ENST00000478603 MMP24-AS1A0A0U1RRL7 71 aa10.97□□□□□ -0.65
C9orf3-216ENST00000478603 TMEM254Q8TBM7 123 aa10.95□□□□□ -0.66
C9orf3-216ENST00000478603 MRPL34Q9BQ48 92 aaKnown RBP10.95□□□□□ -0.66
C9orf3-216ENST00000478603 SMCPP49901 116 aaPredicted RBP10.94□□□□□ -0.66
C9orf3-216ENST00000478603 BATFQ16520 125 aa10.92□□□□□ -0.66
C9orf3-216ENST00000478603 SMIM6P0DI80 62 aa10.91□□□□□ -0.66
C9orf3-216ENST00000478603 K7EQZ3 153 aa10.9□□□□□ -0.66
C9orf3-216ENST00000478603 hDV103S1A0JD37 113 aa10.88□□□□□ -0.67
C9orf3-216ENST00000478603 NDUFS5O43920 106 aa10.88□□□□□ -0.67
C9orf3-216ENST00000478603 H1FX-AS1Q4G0G2 97 aa10.83□□□□□ -0.68
C9orf3-216ENST00000478603 TSTD3H0UI37 97 aa10.82□□□□□ -0.68
C9orf3-216ENST00000478603 H3BT86 120 aa10.82□□□□□ -0.68
C9orf3-216ENST00000478603 C9orf118A6NHY6 69 aa10.8□□□□□ -0.68
C9orf3-216ENST00000478603 KRTAP19-6Q3LI70 58 aa10.8□□□□□ -0.68
C9orf3-216ENST00000478603 IGKV2D-30A0A075B6S6 120 aa10.79□□□□□ -0.68
C9orf3-216ENST00000478603 BPY2O14599 106 aa10.79□□□□□ -0.68
C9orf3-216ENST00000478603 IGKV2-30P06310 120 aa10.79□□□□□ -0.68
C9orf3-216ENST00000478603 Q5W150 140 aa10.78□□□□□ -0.68
C9orf3-216ENST00000478603 TAX1BP3O14907 124 aa10.77□□□□□ -0.69
C9orf3-216ENST00000478603 A0A1W2PPM0 123 aa10.76□□□□□ -0.69
C9orf3-216ENST00000478603 MACF1Q9UPN3 7388 aaKnown RBP10.76□□□□□ -0.69
C9orf3-216ENST00000478603 LINC00846Q9NV44 126 aa10.75□□□□□ -0.69
C9orf3-216ENST00000478603 Q8N9L7 120 aa10.74□□□□□ -0.69
C9orf3-216ENST00000478603 C7orf65Q6ZTY9 151 aa10.72□□□□□ -0.69
C9orf3-216ENST00000478603 CASC2Q6XLA1 102 aa10.68□□□□□ -0.7
C9orf3-216ENST00000478603 HCG22E2RYF7 251 aa10.67□□□□□ -0.7
C9orf3-216ENST00000478603 SYNE2Q8WXH0 6885 aaKnown RBP10.64□□□□□ -0.71
C9orf3-216ENST00000478603 C4orf26Q17RF5 130 aa10.62□□□□□ -0.71
C9orf3-216ENST00000478603 SPCS1Q9Y6A9 102 aa10.6□□□□□ -0.71
C9orf3-216ENST00000478603 LOC105371267A0A1B0GV96 52 aa10.57□□□□□ -0.72
C9orf3-216ENST00000478603 CXCL6P80162 114 aa10.56□□□□□ -0.72
C9orf3-216ENST00000478603 C5orf47Q569G3 176 aa10.5□□□□□ -0.73
C9orf3-216ENST00000478603 UBL5Q9BZL1 73 aa10.49□□□□□ -0.73
C9orf3-216ENST00000478603 KRTAP3-1Q9BYR8 98 aa10.47□□□□□ -0.73
C9orf3-216ENST00000478603 PRO0461Q9UI25 63 aa10.46□□□□□ -0.73
C9orf3-216ENST00000478603 FAM236AA0A1B0GUQ0 79 aa10.42□□□□□ -0.74
C9orf3-216ENST00000478603 FAM236BA0A1B0GV22 79 aa10.42□□□□□ -0.74
C9orf3-216ENST00000478603 S4R3F8 94 aa10.41□□□□□ -0.74
C9orf3-216ENST00000478603 KRTAP6-3Q3LI67 103 aa10.39□□□□□ -0.75
C9orf3-216ENST00000478603 C1orf64Q8NEQ6 169 aa10.39□□□□□ -0.75
C9orf3-216ENST00000478603 K7EP34 96 aa10.37□□□□□ -0.75
C9orf3-216ENST00000478603 COL5A1-AS1Q5SY13 56 aa10.37□□□□□ -0.75
C9orf3-216ENST00000478603 LCA10Q71F78 164 aa10.35□□□□□ -0.75
C9orf3-216ENST00000478603 CSAG1Q6PB30 78 aa10.33□□□□□ -0.76
C9orf3-216ENST00000478603 MT1BP07438 61 aa10.3□□□□□ -0.76
C9orf3-216ENST00000478603 TP53AIP1Q9HCN2 124 aa10.28□□□□□ -0.76
C9orf3-216ENST00000478603 A6NN06 94 aa10.25□□□□□ -0.77
C9orf3-216ENST00000478603 Q5VV11 94 aa10.25□□□□□ -0.77
C9orf3-216ENST00000478603 SPRR2GQ9BYE4 73 aa10.24□□□□□ -0.77
C9orf3-216ENST00000478603 KRTAP19-8Q3LI54 63 aa10.23□□□□□ -0.77
C9orf3-216ENST00000478603 ETDBQ3ZM63 59 aa10.18□□□□□ -0.78
C9orf3-216ENST00000478603 GTF2H5Q6ZYL4 71 aa10.18□□□□□ -0.78
C9orf3-216ENST00000478603 KLKP1Q107X0 134 aa10.16□□□□□ -0.78
C9orf3-216ENST00000478603 CYP4F30PQ9H0H9 118 aa10.16□□□□□ -0.78
C9orf3-216ENST00000478603 F8W1H4 67 aa10.14□□□□□ -0.79
C9orf3-216ENST00000478603 A0A087WVE0 104 aa10.12□□□□□ -0.79
C9orf3-216ENST00000478603 KRTAP10-5P60370 271 aa10.09□□□□□ -0.79
C9orf3-216ENST00000478603 TRAV22A0A0B4J277 110 aa10.07□□□□□ -0.8
C9orf3-216ENST00000478603 LOC101927531A0A1B0GV80 90 aa10.03□□□□□ -0.8
C9orf3-216ENST00000478603 NEBP20929 6669 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms