RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 KMT2CQ8NEZ4 4911 aaKnown RBP7.09□□□□□ -1.28
SYNE1-222ENST00000474655 PLA2G1BP04054 148 aaKnown RBP7.08□□□□□ -1.28
SYNE1-222ENST00000474655 ZCCHC13Q8WW36 166 aaKnown RBP7.08□□□□□ -1.28
SYNE1-222ENST00000474655 CDK2AP2O75956 126 aa7.08□□□□□ -1.28
SYNE1-222ENST00000474655 KRTAP10-4P60372 401 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-222ENST00000474655 RPS28P62857 69 aaKnown RBP7.07□□□□□ -1.28
SYNE1-222ENST00000474655 IGHV6-1A0A0B4J1U7 121 aa7.06□□□□□ -1.28
SYNE1-222ENST00000474655 SMR3BP02814 79 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-222ENST00000474655 APOBP04114 4563 aaKnown RBP7.04□□□□□ -1.28
SYNE1-222ENST00000474655 FAM236DA0A1B0GTK5 79 aa7.04□□□□□ -1.28
SYNE1-222ENST00000474655 FAM236CP0DP71 79 aa7.04□□□□□ -1.28
SYNE1-222ENST00000474655 H3BPC8 53 aa7.03□□□□□ -1.28
SYNE1-222ENST00000474655 TYMSOSQ8TAI1 123 aa7.03□□□□□ -1.28
SYNE1-222ENST00000474655 C1orf195Q5TG92 126 aa7.03□□□□□ -1.28
SYNE1-222ENST00000474655 NOTCH2NLQ7Z3S9 236 aa7.03□□□□□ -1.28
SYNE1-222ENST00000474655 LIMD2Q9BT23 127 aa7.03□□□□□ -1.28
SYNE1-222ENST00000474655 TP53AIP1Q9HCN2 124 aa7.03□□□□□ -1.28
SYNE1-222ENST00000474655 MP68P56378 58 aa7.02□□□□□ -1.29
SYNE1-222ENST00000474655 ATP5EP56381 51 aaPredicted RBP7.02□□□□□ -1.29
SYNE1-222ENST00000474655 MRPL34Q9BQ48 92 aaKnown RBP7.02□□□□□ -1.29
SYNE1-222ENST00000474655 SPINK1P00995 79 aa7.01□□□□□ -1.29
SYNE1-222ENST00000474655 C8orf87E5RJ46 101 aa7□□□□□ -1.29
SYNE1-222ENST00000474655 H0Y9P7 68 aa7□□□□□ -1.29
SYNE1-222ENST00000474655 RPS29P62273 56 aaKnown RBP7□□□□□ -1.29
SYNE1-222ENST00000474655 TRAV22A0A0B4J277 110 aa6.98□□□□□ -1.29
SYNE1-222ENST00000474655 C4orf48Q5BLP8 95 aa6.98□□□□□ -1.29
SYNE1-222ENST00000474655 PRR26Q8N8Z3 221 aa6.98□□□□□ -1.29
SYNE1-222ENST00000474655 LINC00208Q96KT6 92 aa6.97□□□□□ -1.29
SYNE1-222ENST00000474655 SPAG11AQ6PDA7 123 aa6.97□□□□□ -1.29
SYNE1-222ENST00000474655 LINC00304Q8N9R0 145 aa6.95□□□□□ -1.3
SYNE1-222ENST00000474655 SERP1Q9Y6X1 66 aa6.95□□□□□ -1.3
SYNE1-222ENST00000474655 FAT1Q14517 4588 aa6.95□□□□□ -1.3
SYNE1-222ENST00000474655 OXTP01178 125 aa6.94□□□□□ -1.3
SYNE1-222ENST00000474655 LINC00313P59037 77 aa6.94□□□□□ -1.3
SYNE1-222ENST00000474655 C1orf64Q8NEQ6 169 aa6.94□□□□□ -1.3
SYNE1-222ENST00000474655 NDUFS5O43920 106 aa6.92□□□□□ -1.3
SYNE1-222ENST00000474655 Q8N9P0 234 aaPredicted RBP6.91□□□□□ -1.3
SYNE1-222ENST00000474655 KRTAP13-3Q3SY46 172 aa6.9□□□□□ -1.3
SYNE1-222ENST00000474655 KRTAP16-1A8MUX0 517 aa6.9□□□□□ -1.31
SYNE1-222ENST00000474655 SPANXA2-OT1Q8N9U9 137 aa6.9□□□□□ -1.31
SYNE1-222ENST00000474655 PKHD1L1Q86WI1 4243 aa6.89□□□□□ -1.31
SYNE1-222ENST00000474655 FAM229AH3BQW9 127 aa6.89□□□□□ -1.31
SYNE1-222ENST00000474655 CYP4F30PQ9H0H9 118 aa6.89□□□□□ -1.31
SYNE1-222ENST00000474655 RYR3Q15413 4870 aa6.88□□□□□ -1.31
SYNE1-222ENST00000474655 Q5W150 140 aa6.87□□□□□ -1.31
SYNE1-222ENST00000474655 LOC101927531A0A1B0GV80 90 aa6.83□□□□□ -1.32
SYNE1-222ENST00000474655 HSPG2P98160 4391 aa6.82□□□□□ -1.32
SYNE1-222ENST00000474655 Q5VSD8 79 aa6.82□□□□□ -1.32
SYNE1-222ENST00000474655 IGLV7-46A0A075B6I9 117 aa6.82□□□□□ -1.32
SYNE1-222ENST00000474655 LCE2AQ5TA79 106 aaPredicted RBP6.8□□□□□ -1.32
SYNE1-222ENST00000474655 SMIM26A0A096LP01 95 aa6.8□□□□□ -1.32
SYNE1-222ENST00000474655 KRTAP10-8P60410 259 aa6.8□□□□□ -1.32
SYNE1-222ENST00000474655 FLG2Q5D862 2391 aaPredicted RBP6.78□□□□□ -1.32
SYNE1-222ENST00000474655 PRR4Q16378 134 aa6.78□□□□□ -1.32
SYNE1-222ENST00000474655 PCOTHQ58A44 107 aa6.77□□□□□ -1.33
SYNE1-222ENST00000474655 KRTAP17-1Q9BYP8 105 aa6.77□□□□□ -1.33
SYNE1-222ENST00000474655 RYR1P21817 5038 aa6.76□□□□□ -1.33
SYNE1-222ENST00000474655 FP248Q71RG6 208 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-222ENST00000474655 Q8N1X5 172 aa6.74□□□□□ -1.33
SYNE1-222ENST00000474655 IGKV2-30P06310 120 aa6.74□□□□□ -1.33
SYNE1-222ENST00000474655 TNXBP22105 4242 aa6.73□□□□□ -1.33
SYNE1-222ENST00000474655 LRP1Q07954 4544 aaKnown RBP6.71□□□□□ -1.33
SYNE1-222ENST00000474655 C20orf166-AS1Q96NR2 134 aa6.71□□□□□ -1.34
SYNE1-222ENST00000474655 A8MUU9 505 aa6.69□□□□□ -1.34
SYNE1-222ENST00000474655 RETNLBQ9BQ08 111 aa6.69□□□□□ -1.34
SYNE1-222ENST00000474655 KIAA1109Q2LD37 5005 aa6.67□□□□□ -1.34
SYNE1-222ENST00000474655 HRES1P13985 223 aa6.67□□□□□ -1.34
SYNE1-222ENST00000474655 C4orf26Q17RF5 130 aa6.67□□□□□ -1.34
SYNE1-222ENST00000474655 FAT3Q8TDW7 4589 aa6.66□□□□□ -1.34
SYNE1-222ENST00000474655 C9orf92A6NGG3 77 aa6.65□□□□□ -1.34
SYNE1-222ENST00000474655 COA5Q86WW8 74 aa6.65□□□□□ -1.34
SYNE1-222ENST00000474655 MT1HL1P0DM35 61 aa6.64□□□□□ -1.35
SYNE1-222ENST00000474655 Q1T7F1 81 aa6.64□□□□□ -1.35
SYNE1-222ENST00000474655 DMAC1Q96GE9 116 aa6.62□□□□□ -1.35
SYNE1-222ENST00000474655 EPPK1P58107 5090 aaKnown RBP6.62□□□□□ -1.35
SYNE1-222ENST00000474655 IGKV2D-30A0A075B6S6 120 aa6.62□□□□□ -1.35
SYNE1-222ENST00000474655 DMBT1Q9UGM3 2413 aaPredicted RBP6.61□□□□□ -1.35
SYNE1-222ENST00000474655 Q75L30 129 aa6.61□□□□□ -1.35
SYNE1-222ENST00000474655 MPLKIPQ8TAP9 179 aa6.61□□□□□ -1.35
SYNE1-222ENST00000474655 C7orf65Q6ZTY9 151 aa6.6□□□□□ -1.35
SYNE1-222ENST00000474655 ACYP2P14621 99 aa6.59□□□□□ -1.35
SYNE1-222ENST00000474655 V9GYY9 64 aa6.58□□□□□ -1.36
SYNE1-222ENST00000474655 MYCBP2O75592 4640 aa6.56□□□□□ -1.36
SYNE1-222ENST00000474655 PRO0628Q9UI54 55 aa6.52□□□□□ -1.37
SYNE1-222ENST00000474655 KRTAP4-5Q9BYR2 181 aa6.5□□□□□ -1.37
SYNE1-222ENST00000474655 A8MUN3 132 aa6.49□□□□□ -1.37
SYNE1-222ENST00000474655 SPINK7P58062 85 aa6.49□□□□□ -1.37
SYNE1-222ENST00000474655 RPL37P61927 97 aaKnown RBP6.49□□□□□ -1.37
SYNE1-222ENST00000474655 XP32Q5T750 250 aa6.48□□□□□ -1.37
SYNE1-222ENST00000474655 LINC01558Q9Y6Z2 57 aa6.48□□□□□ -1.37
SYNE1-222ENST00000474655 KRTAP4-8Q9BYQ9 185 aa6.47□□□□□ -1.37
SYNE1-222ENST00000474655 PSPHP1O15172 72 aa6.46□□□□□ -1.38
SYNE1-222ENST00000474655 ATP11AUNQ6ZP68 121 aa6.46□□□□□ -1.38
SYNE1-222ENST00000474655 CHKB-CPT1BH3BT56 60 aa6.44□□□□□ -1.38
SYNE1-222ENST00000474655 Q5VV11 94 aa6.44□□□□□ -1.38
SYNE1-222ENST00000474655 TPRXLQ17RH7 258 aa6.42□□□□□ -1.38
SYNE1-222ENST00000474655 PRR15LQ9BU68 103 aa6.41□□□□□ -1.38
SYNE1-222ENST00000474655 KRTAP3-1Q9BYR8 98 aa6.41□□□□□ -1.38
SYNE1-222ENST00000474655 COX6B2Q6YFQ2 88 aa6.37□□□□□ -1.39
SYNE1-222ENST00000474655 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms