RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 FP248Q71RG6 208 aaPredicted RBP5.42□□□□□ -1.54
SF3A1-207ENST00000471342 CDIP1Q9H305 208 aa5.42□□□□□ -1.54
SF3A1-207ENST00000471342 IGLV7-46A0A075B6I9 117 aa5.4□□□□□ -1.54
SF3A1-207ENST00000471342 IGKV3D-7A0A0C4DH55 119 aa5.4□□□□□ -1.54
SF3A1-207ENST00000471342 C21orf62-AS1Q17RA5 79 aa5.39□□□□□ -1.55
SF3A1-207ENST00000471342 TPRXLQ17RH7 258 aa5.39□□□□□ -1.55
SF3A1-207ENST00000471342 SS18L2Q9UHA2 77 aa5.39□□□□□ -1.55
SF3A1-207ENST00000471342 MUC2Q02817 5179 aa5.37□□□□□ -1.55
SF3A1-207ENST00000471342 IGKV4-1P06312 121 aa5.36□□□□□ -1.55
SF3A1-207ENST00000471342 PRR4Q16378 134 aa5.36□□□□□ -1.55
SF3A1-207ENST00000471342 NREPQ16612 68 aa5.36□□□□□ -1.55
SF3A1-207ENST00000471342 ACYP1P07311 99 aa5.35□□□□□ -1.55
SF3A1-207ENST00000471342 PCP4P48539 62 aa5.35□□□□□ -1.55
SF3A1-207ENST00000471342 XP32Q5T750 250 aa5.35□□□□□ -1.55
SF3A1-207ENST00000471342 Q8N9L7 120 aa5.35□□□□□ -1.55
SF3A1-207ENST00000471342 A8MWP4 228 aa5.34□□□□□ -1.55
SF3A1-207ENST00000471342 K7EQZ3 153 aa5.34□□□□□ -1.55
SF3A1-207ENST00000471342 PRR15Q8IV56 129 aa5.34□□□□□ -1.55
SF3A1-207ENST00000471342 A0A1B0GVX0 72 aa5.33□□□□□ -1.56
SF3A1-207ENST00000471342 MMP24-AS1A0A0U1RRL7 71 aa5.32□□□□□ -1.56
SF3A1-207ENST00000471342 J3KT08 172 aa5.32□□□□□ -1.56
SF3A1-207ENST00000471342 SIGMAR1Q99720 223 aa5.32□□□□□ -1.56
SF3A1-207ENST00000471342 KRTAP4-1Q9BYQ7 146 aa5.32□□□□□ -1.56
SF3A1-207ENST00000471342 C9orf92A6NGG3 77 aa5.31□□□□□ -1.56
SF3A1-207ENST00000471342 BPY2O14599 106 aa5.31□□□□□ -1.56
SF3A1-207ENST00000471342 C20orf166-AS1Q96NR2 134 aa5.31□□□□□ -1.56
SF3A1-207ENST00000471342 CXCL6P80162 114 aa5.3□□□□□ -1.56
SF3A1-207ENST00000471342 UBL5Q9BZL1 73 aa5.3□□□□□ -1.56
SF3A1-207ENST00000471342 A8MUU9 505 aa5.29□□□□□ -1.56
SF3A1-207ENST00000471342 LINC00643Q86TS7 51 aa5.29□□□□□ -1.56
SF3A1-207ENST00000471342 C8orf17Q9NRJ1 99 aa5.29□□□□□ -1.56
SF3A1-207ENST00000471342 IGHV6-1A0A0B4J1U7 121 aa5.28□□□□□ -1.56
SF3A1-207ENST00000471342 Q8N9P0 234 aaPredicted RBP5.28□□□□□ -1.56
SF3A1-207ENST00000471342 LINC00313P59037 77 aa5.26□□□□□ -1.57
SF3A1-207ENST00000471342 C8orf87E5RJ46 101 aa5.25□□□□□ -1.57
SF3A1-207ENST00000471342 K7ERU9 68 aa5.25□□□□□ -1.57
SF3A1-207ENST00000471342 MT-ATP8P03928 68 aa5.25□□□□□ -1.57
SF3A1-207ENST00000471342 RPL37P61927 97 aaKnown RBP5.25□□□□□ -1.57
SF3A1-207ENST00000471342 Q75L30 129 aa5.25□□□□□ -1.57
SF3A1-207ENST00000471342 FAT4Q6V0I7 4981 aa5.25□□□□□ -1.57
SF3A1-207ENST00000471342 A0A087WVE0 104 aa5.23□□□□□ -1.57
SF3A1-207ENST00000471342 J3QR89 54 aa5.23□□□□□ -1.57
SF3A1-207ENST00000471342 KRTAP19-2Q3LHN2 52 aa5.22□□□□□ -1.57
SF3A1-207ENST00000471342 ATP5EP2Q5VTU8 51 aa5.22□□□□□ -1.57
SF3A1-207ENST00000471342 SCGB1A1P11684 91 aa5.21□□□□□ -1.58
SF3A1-207ENST00000471342 Q5W150 140 aa5.2□□□□□ -1.58
SF3A1-207ENST00000471342 TMEM254Q8TBM7 123 aa5.2□□□□□ -1.58
SF3A1-207ENST00000471342 hDV103S1A0JD37 113 aa5.19□□□□□ -1.58
SF3A1-207ENST00000471342 HCG22E2RYF7 251 aa5.19□□□□□ -1.58
SF3A1-207ENST00000471342 NDUFB1O75438 58 aa5.19□□□□□ -1.58
SF3A1-207ENST00000471342 MRPL34Q9BQ48 92 aaKnown RBP5.19□□□□□ -1.58
SF3A1-207ENST00000471342 HIST1H4AP62805 103 aaKnown RBP5.18□□□□□ -1.58
SF3A1-207ENST00000471342 PCOTHQ58A44 107 aa5.18□□□□□ -1.58
SF3A1-207ENST00000471342 WFDC13Q8IUB5 93 aa5.18□□□□□ -1.58
SF3A1-207ENST00000471342 CASC2Q6XLA1 102 aa5.16□□□□□ -1.58
SF3A1-207ENST00000471342 IMUPQ9GZP8 106 aa5.15□□□□□ -1.59
SF3A1-207ENST00000471342 ZCCHC13Q8WW36 166 aaKnown RBP5.13□□□□□ -1.59
SF3A1-207ENST00000471342 OCR1Q9BZK8 76 aa5.12□□□□□ -1.59
SF3A1-207ENST00000471342 FLGP20930 4061 aaPredicted RBP5.11□□□□□ -1.59
SF3A1-207ENST00000471342 MPLKIPQ8TAP9 179 aa5.11□□□□□ -1.59
SF3A1-207ENST00000471342 SEC61BP60468 96 aaKnown RBP5.09□□□□□ -1.59
SF3A1-207ENST00000471342 HRES1P13985 223 aa5.08□□□□□ -1.6
SF3A1-207ENST00000471342 ATP11AUNQ6ZP68 121 aa5.05□□□□□ -1.6
SF3A1-207ENST00000471342 FAM236AA0A1B0GUQ0 79 aa5.03□□□□□ -1.6
SF3A1-207ENST00000471342 FAM236BA0A1B0GV22 79 aa5.03□□□□□ -1.6
SF3A1-207ENST00000471342 SPINK7P58062 85 aa5.03□□□□□ -1.6
SF3A1-207ENST00000471342 KRTAP4-8Q9BYQ9 185 aa5.03□□□□□ -1.6
SF3A1-207ENST00000471342 IGKV2-30P06310 120 aa5.02□□□□□ -1.61
SF3A1-207ENST00000471342 TP53AIP1Q9HCN2 124 aa5.02□□□□□ -1.61
SF3A1-207ENST00000471342 UQCRQO14949 82 aa5.01□□□□□ -1.61
SF3A1-207ENST00000471342 NDUFS5O43920 106 aa5.01□□□□□ -1.61
SF3A1-207ENST00000471342 KRTAP3-1Q9BYR8 98 aa5.01□□□□□ -1.61
SF3A1-207ENST00000471342 KRTAP9-2Q9BYQ4 174 aa4.98□□□□□ -1.61
SF3A1-207ENST00000471342 CYP4F30PQ9H0H9 118 aa4.98□□□□□ -1.61
SF3A1-207ENST00000471342 TRAV22A0A0B4J277 110 aa4.97□□□□□ -1.61
SF3A1-207ENST00000471342 TRAV7A0A075B6U4 112 aa4.96□□□□□ -1.62
SF3A1-207ENST00000471342 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.95□□□□□ -1.62
SF3A1-207ENST00000471342 KLKP1Q107X0 134 aa4.95□□□□□ -1.62
SF3A1-207ENST00000471342 A0A0U1RQV1 116 aa4.94□□□□□ -1.62
SF3A1-207ENST00000471342 H0Y9P7 68 aa4.94□□□□□ -1.62
SF3A1-207ENST00000471342 MT1HP80294 61 aa4.93□□□□□ -1.62
SF3A1-207ENST00000471342 C5orf47Q569G3 176 aa4.93□□□□□ -1.62
SF3A1-207ENST00000471342 IGKV2D-30A0A075B6S6 120 aa4.92□□□□□ -1.62
SF3A1-207ENST00000471342 KRTAP9-6A0A140TA67 174 aa4.92□□□□□ -1.62
SF3A1-207ENST00000471342 ATOX1O00244 68 aa4.92□□□□□ -1.62
SF3A1-207ENST00000471342 C7orf65Q6ZTY9 151 aa4.92□□□□□ -1.62
SF3A1-207ENST00000471342 CYSTM1Q9H1C7 97 aa4.92□□□□□ -1.62
SF3A1-207ENST00000471342 SERP2Q8N6R1 65 aa4.91□□□□□ -1.62
SF3A1-207ENST00000471342 LOC101927531A0A1B0GV80 90 aa4.9□□□□□ -1.63
SF3A1-207ENST00000471342 C1orf64Q8NEQ6 169 aa4.9□□□□□ -1.63
SF3A1-207ENST00000471342 C4orf26Q17RF5 130 aa4.89□□□□□ -1.63
SF3A1-207ENST00000471342 LINC00208Q96KT6 92 aa4.89□□□□□ -1.63
SF3A1-207ENST00000471342 SMIM20Q8N5G0 67 aa4.88□□□□□ -1.63
SF3A1-207ENST00000471342 H3BPC8 53 aa4.87□□□□□ -1.63
SF3A1-207ENST00000471342 COX7CP15954 63 aa4.86□□□□□ -1.63
SF3A1-207ENST00000471342 COX6B2Q6YFQ2 88 aa4.86□□□□□ -1.63
SF3A1-207ENST00000471342 KRTAP4-12Q9BQ66 201 aa4.84□□□□□ -1.63
SF3A1-207ENST00000471342 SNURFQ9Y675 71 aa4.83□□□□□ -1.64
SF3A1-207ENST00000471342 MP68P56378 58 aa4.82□□□□□ -1.64
SF3A1-207ENST00000471342 C20orf197Q8N268 126 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms