RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 PSORS1C2Q9UIG4 136 aa2.9□□□□□ -1.95
COL3A1-205ENST00000470167 KIAA1109Q2LD37 5005 aa2.9□□□□□ -1.95
COL3A1-205ENST00000470167 PLCE1Q9P212 2302 aa2.9□□□□□ -1.95
COL3A1-205ENST00000470167 CSMD2Q7Z408 3487 aa2.89□□□□□ -1.95
COL3A1-205ENST00000470167 SORL1Q92673 2214 aa2.89□□□□□ -1.95
COL3A1-205ENST00000470167 SPTY2D1-AS1A0A0U1RR47 76 aa2.89□□□□□ -1.95
COL3A1-205ENST00000470167 A8MTW9 85 aa2.89□□□□□ -1.95
COL3A1-205ENST00000470167 DEFB116Q30KQ4 102 aa2.89□□□□□ -1.95
COL3A1-205ENST00000470167 MINOS1Q5TGZ0 78 aa2.89□□□□□ -1.95
COL3A1-205ENST00000470167 ALMS1Q8TCU4 4167 aa2.88□□□□□ -1.95
COL3A1-205ENST00000470167 APELAP0DMC3 54 aa2.88□□□□□ -1.95
COL3A1-205ENST00000470167 DEFB103AP81534 67 aa2.88□□□□□ -1.95
COL3A1-205ENST00000470167 MMP24-AS1A0A0U1RRL7 71 aa2.87□□□□□ -1.95
COL3A1-205ENST00000470167 GVQW2A0A096LPI5 108 aaPredicted RBP2.86□□□□□ -1.95
COL3A1-205ENST00000470167 G3V318 75 aa2.86□□□□□ -1.95
COL3A1-205ENST00000470167 TPRXLQ17RH7 258 aa2.86□□□□□ -1.95
COL3A1-205ENST00000470167 CUBNO60494 3623 aa2.86□□□□□ -1.95
COL3A1-205ENST00000470167 CNTRLQ7Z7A1 2325 aa2.85□□□□□ -1.95
COL3A1-205ENST00000470167 NSD1Q96L73 2696 aaPredicted RBP2.85□□□□□ -1.95
COL3A1-205ENST00000470167 DEFB131AP59861 70 aa2.85□□□□□ -1.95
COL3A1-205ENST00000470167 H0YAA0 97 aa2.84□□□□□ -1.95
COL3A1-205ENST00000470167 TENM3Q9P273 2699 aa2.84□□□□□ -1.96
COL3A1-205ENST00000470167 ZANQ9Y493 2812 aa2.83□□□□□ -1.96
COL3A1-205ENST00000470167 MXRA5Q9NR99 2828 aa2.83□□□□□ -1.96
COL3A1-205ENST00000470167 HIVEP2P31629 2446 aa2.82□□□□□ -1.96
COL3A1-205ENST00000470167 SPACA4Q8TDM5 124 aa2.82□□□□□ -1.96
COL3A1-205ENST00000470167 R4GN34 69 aa2.82□□□□□ -1.96
COL3A1-205ENST00000470167 RYR2Q92736 4967 aa2.81□□□□□ -1.96
COL3A1-205ENST00000470167 CLPSL2Q6UWE3 100 aa2.81□□□□□ -1.96
COL3A1-205ENST00000470167 CD52P31358 61 aa2.8□□□□□ -1.96
COL3A1-205ENST00000470167 KRTAP13-3Q3SY46 172 aa2.8□□□□□ -1.96
COL3A1-205ENST00000470167 C14orf177Q52M58 125 aa2.8□□□□□ -1.96
COL3A1-205ENST00000470167 Q6ZRX8 168 aa2.8□□□□□ -1.96
COL3A1-205ENST00000470167 KRTAP1-5Q9BYS1 174 aa2.8□□□□□ -1.96
COL3A1-205ENST00000470167 SONP18583 2426 aaKnown RBP2.8□□□□□ -1.96
COL3A1-205ENST00000470167 COX6B2Q6YFQ2 88 aa2.79□□□□□ -1.96
COL3A1-205ENST00000470167 Q6ZSA8 131 aa2.79□□□□□ -1.96
COL3A1-205ENST00000470167 MRPL34Q9BQ48 92 aaKnown RBP2.79□□□□□ -1.96
COL3A1-205ENST00000470167 KNL1Q8NG31 2342 aa2.78□□□□□ -1.96
COL3A1-205ENST00000470167 DEFB1P60022 68 aa2.78□□□□□ -1.96
COL3A1-205ENST00000470167 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.78□□□□□ -1.96
COL3A1-205ENST00000470167 CRIPTQ9P021 101 aa2.78□□□□□ -1.96
COL3A1-205ENST00000470167 Q9Y3F1 56 aa2.78□□□□□ -1.96
COL3A1-205ENST00000470167 VPS13CQ709C8 3753 aa2.78□□□□□ -1.96
COL3A1-205ENST00000470167 TENM2Q9NT68 2774 aa2.78□□□□□ -1.97
COL3A1-205ENST00000470167 ASCC3Q8N3C0 2202 aaKnown RBP2.77□□□□□ -1.97
COL3A1-205ENST00000470167 TACC2O95359 2948 aa2.77□□□□□ -1.97
COL3A1-205ENST00000470167 INE1O15225 51 aa2.76□□□□□ -1.97
COL3A1-205ENST00000470167 IGFL1Q6UW32 110 aa2.76□□□□□ -1.97
COL3A1-205ENST00000470167 KRTAP7-1Q8IUC3 87 aa2.76□□□□□ -1.97
COL3A1-205ENST00000470167 TYMSOSQ8TAI1 123 aa2.76□□□□□ -1.97
COL3A1-205ENST00000470167 PLAC4Q8WY50 150 aa2.76□□□□□ -1.97
COL3A1-205ENST00000470167 MAP1AP78559 2803 aaPredicted RBP2.76□□□□□ -1.97
COL3A1-205ENST00000470167 HERC2O95714 4834 aa2.76□□□□□ -1.97
COL3A1-205ENST00000470167 BSNQ9UPA5 3926 aa2.75□□□□□ -1.97
COL3A1-205ENST00000470167 MT3P25713 68 aa2.75□□□□□ -1.97
COL3A1-205ENST00000470167 SPRR1AP35321 89 aa2.75□□□□□ -1.97
COL3A1-205ENST00000470167 LY6EQ16553 131 aa2.75□□□□□ -1.97
COL3A1-205ENST00000470167 DEFB109BQ30KR1 87 aa2.75□□□□□ -1.97
COL3A1-205ENST00000470167 ANK2Q01484 3957 aa2.75□□□□□ -1.97
COL3A1-205ENST00000470167 SPINK13Q1W4C9 94 aa2.74□□□□□ -1.97
COL3A1-205ENST00000470167 DEFB108BQ8NET1 73 aa2.74□□□□□ -1.97
COL3A1-205ENST00000470167 RHPN1-AS1Q9BWJ2 59 aa2.74□□□□□ -1.97
COL3A1-205ENST00000470167 H3BUA1 57 aa2.73□□□□□ -1.97
COL3A1-205ENST00000470167 DEFB124Q8NES8 71 aa2.73□□□□□ -1.97
COL3A1-205ENST00000470167 DEFB105AQ8NG35 78 aa2.73□□□□□ -1.97
COL3A1-205ENST00000470167 H1FX-AS1Q4G0G2 97 aa2.72□□□□□ -1.97
COL3A1-205ENST00000470167 Q6ZRN7 208 aaPredicted RBP2.72□□□□□ -1.97
COL3A1-205ENST00000470167 UNQ6190/PRO20217Q6UXQ8 127 aa2.71□□□□□ -1.98
COL3A1-205ENST00000470167 KRTAP2-2Q9BYT5 123 aa2.71□□□□□ -1.98
COL3A1-205ENST00000470167 USMG5Q96IX5 58 aa2.7□□□□□ -1.98
COL3A1-205ENST00000470167 C10orf99Q6UWK7 81 aa2.69□□□□□ -1.98
COL3A1-205ENST00000470167 MAPK1IP1LQ8NDC0 245 aa2.69□□□□□ -1.98
COL3A1-205ENST00000470167 DEFB130BP0DP73 79 aa2.68□□□□□ -1.98
COL3A1-205ENST00000470167 DEFB130AP0DP74 79 aa2.68□□□□□ -1.98
COL3A1-205ENST00000470167 ABCA1O95477 2261 aa2.68□□□□□ -1.98
COL3A1-205ENST00000470167 MUC2Q02817 5179 aa2.67□□□□□ -1.98
COL3A1-205ENST00000470167 SPRR1BP22528 89 aa2.67□□□□□ -1.98
COL3A1-205ENST00000470167 KRTAP10-9P60411 292 aa2.67□□□□□ -1.98
COL3A1-205ENST00000470167 PRKDCP78527 4128 aaKnown RBP2.66□□□□□ -1.98
COL3A1-205ENST00000470167 LYNX1P0DP58 116 aa2.66□□□□□ -1.98
COL3A1-205ENST00000470167 RPL37P61927 97 aaKnown RBP2.66□□□□□ -1.98
COL3A1-205ENST00000470167 C10orf95Q9H7T3 257 aa2.66□□□□□ -1.98
COL3A1-205ENST00000470167 ZNF469Q96JG9 3925 aaPredicted RBP2.65□□□□□ -1.98
COL3A1-205ENST00000470167 PKDREJQ9NTG1 2253 aa2.65□□□□□ -1.99
COL3A1-205ENST00000470167 KRTAP12-2P59991 146 aa2.65□□□□□ -1.99
COL3A1-205ENST00000470167 KRTAP10-8P60410 259 aa2.65□□□□□ -1.99
COL3A1-205ENST00000470167 HERC1Q15751 4861 aa2.64□□□□□ -1.99
COL3A1-205ENST00000470167 SVEP1Q4LDE5 3571 aa2.64□□□□□ -1.99
COL3A1-205ENST00000470167 K7EIL1 84 aa2.63□□□□□ -1.99
COL3A1-205ENST00000470167 LELP1Q5T871 98 aa2.63□□□□□ -1.99
COL3A1-205ENST00000470167 DEFB119Q8N690 84 aa2.63□□□□□ -1.99
COL3A1-205ENST00000470167 ABCA13Q86UQ4 5058 aa2.62□□□□□ -1.99
COL3A1-205ENST00000470167 WNK2Q9Y3S1 2297 aa2.61□□□□□ -1.99
COL3A1-205ENST00000470167 HTN1P15515 57 aa2.61□□□□□ -1.99
COL3A1-205ENST00000470167 H3BUX3 64 aa2.6□□□□□ -1.99
COL3A1-205ENST00000470167 AKAP6Q13023 2319 aa2.6□□□□□ -1.99
COL3A1-205ENST00000470167 COL7A1Q02388 2944 aa2.6□□□□□ -1.99
COL3A1-205ENST00000470167 LCE1FQ5T754 118 aa2.59□□□□□ -1.99
COL3A1-205ENST00000470167 NOTCH3Q9UM47 2321 aa2.59□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms