RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 NOTCH2NLQ7Z3S9 236 aa8.02□□□□□ -1.13
COL9A3-209ENST00000469852 J3KT08 172 aa8.01□□□□□ -1.13
COL9A3-209ENST00000469852 IGHV6-1A0A0B4J1U7 121 aa8□□□□□ -1.13
COL9A3-209ENST00000469852 A0A1B0GVX0 72 aa7.99□□□□□ -1.13
COL9A3-209ENST00000469852 IGKV3D-7A0A0C4DH55 119 aa7.98□□□□□ -1.13
COL9A3-209ENST00000469852 KRTAP16-1A8MUX0 517 aa7.96□□□□□ -1.14
COL9A3-209ENST00000469852 A8MWP4 228 aa7.96□□□□□ -1.14
COL9A3-209ENST00000469852 LINC00313P59037 77 aa7.96□□□□□ -1.14
COL9A3-209ENST00000469852 UBL5Q9BZL1 73 aa7.95□□□□□ -1.14
COL9A3-209ENST00000469852 K7EQZ3 153 aa7.94□□□□□ -1.14
COL9A3-209ENST00000469852 BPY2O14599 106 aa7.94□□□□□ -1.14
COL9A3-209ENST00000469852 RPL37P61927 97 aaKnown RBP7.94□□□□□ -1.14
COL9A3-209ENST00000469852 NDUFB1O75438 58 aa7.92□□□□□ -1.14
COL9A3-209ENST00000469852 PRR15Q8IV56 129 aa7.92□□□□□ -1.14
COL9A3-209ENST00000469852 Q8N9L7 120 aa7.92□□□□□ -1.14
COL9A3-209ENST00000469852 C8orf87E5RJ46 101 aa7.91□□□□□ -1.14
COL9A3-209ENST00000469852 C8orf17Q9NRJ1 99 aa7.91□□□□□ -1.14
COL9A3-209ENST00000469852 FAM240AA0A1B0GVK7 77 aa7.9□□□□□ -1.14
COL9A3-209ENST00000469852 SEC61BP60468 96 aaKnown RBP7.9□□□□□ -1.14
COL9A3-209ENST00000469852 PCOTHQ58A44 107 aa7.9□□□□□ -1.14
COL9A3-209ENST00000469852 Q75L30 129 aa7.9□□□□□ -1.14
COL9A3-209ENST00000469852 C20orf166-AS1Q96NR2 134 aa7.9□□□□□ -1.14
COL9A3-209ENST00000469852 KRTAP4-1Q9BYQ7 146 aa7.9□□□□□ -1.14
COL9A3-209ENST00000469852 A8MUU9 505 aa7.89□□□□□ -1.15
COL9A3-209ENST00000469852 MMP24-AS1A0A0U1RRL7 71 aa7.88□□□□□ -1.15
COL9A3-209ENST00000469852 ACYP1P07311 99 aa7.88□□□□□ -1.15
COL9A3-209ENST00000469852 KRTAP9-2Q9BYQ4 174 aa7.88□□□□□ -1.15
COL9A3-209ENST00000469852 LCE2AQ5TA79 106 aaPredicted RBP7.84□□□□□ -1.15
COL9A3-209ENST00000469852 A0A0U1RQV1 116 aa7.82□□□□□ -1.16
COL9A3-209ENST00000469852 CXCL6P80162 114 aa7.81□□□□□ -1.16
COL9A3-209ENST00000469852 FAT4Q6V0I7 4981 aa7.8□□□□□ -1.16
COL9A3-209ENST00000469852 hDV103S1A0JD37 113 aa7.79□□□□□ -1.16
COL9A3-209ENST00000469852 ATP11AUNQ6ZP68 121 aa7.79□□□□□ -1.16
COL9A3-209ENST00000469852 WFDC13Q8IUB5 93 aa7.79□□□□□ -1.16
COL9A3-209ENST00000469852 Q8N9P0 234 aaPredicted RBP7.79□□□□□ -1.16
COL9A3-209ENST00000469852 TMEM254Q8TBM7 123 aa7.79□□□□□ -1.16
COL9A3-209ENST00000469852 J3QR89 54 aa7.77□□□□□ -1.17
COL9A3-209ENST00000469852 MRPL34Q9BQ48 92 aaKnown RBP7.77□□□□□ -1.17
COL9A3-209ENST00000469852 CASC2Q6XLA1 102 aa7.75□□□□□ -1.17
COL9A3-209ENST00000469852 HCG22E2RYF7 251 aa7.74□□□□□ -1.17
COL9A3-209ENST00000469852 ATP5EP2Q5VTU8 51 aa7.74□□□□□ -1.17
COL9A3-209ENST00000469852 LINC00643Q86TS7 51 aa7.74□□□□□ -1.17
COL9A3-209ENST00000469852 ZCCHC13Q8WW36 166 aaKnown RBP7.71□□□□□ -1.18
COL9A3-209ENST00000469852 KRTAP9-6A0A140TA67 174 aa7.69□□□□□ -1.18
COL9A3-209ENST00000469852 K7ERU9 68 aa7.69□□□□□ -1.18
COL9A3-209ENST00000469852 NDUFS5O43920 106 aa7.69□□□□□ -1.18
COL9A3-209ENST00000469852 HIST1H4AP62805 103 aaKnown RBP7.68□□□□□ -1.18
COL9A3-209ENST00000469852 A0A087WVE0 104 aa7.67□□□□□ -1.18
COL9A3-209ENST00000469852 KRTAP19-2Q3LHN2 52 aa7.64□□□□□ -1.19
COL9A3-209ENST00000469852 Q5W150 140 aa7.64□□□□□ -1.19
COL9A3-209ENST00000469852 MT-ATP8P03928 68 aa7.59□□□□□ -1.19
COL9A3-209ENST00000469852 LCE2CQ5TA81 110 aa7.59□□□□□ -1.19
COL9A3-209ENST00000469852 HRES1P13985 223 aa7.57□□□□□ -1.2
COL9A3-209ENST00000469852 SPINK7P58062 85 aa7.57□□□□□ -1.2
COL9A3-209ENST00000469852 TP53AIP1Q9HCN2 124 aa7.53□□□□□ -1.2
COL9A3-209ENST00000469852 MPLKIPQ8TAP9 179 aa7.52□□□□□ -1.21
COL9A3-209ENST00000469852 IGKV2D-30A0A075B6S6 120 aa7.5□□□□□ -1.21
COL9A3-209ENST00000469852 IGKV2-30P06310 120 aa7.5□□□□□ -1.21
COL9A3-209ENST00000469852 FLGP20930 4061 aaPredicted RBP7.48□□□□□ -1.21
COL9A3-209ENST00000469852 LCE2DQ5TA82 110 aaPredicted RBP7.48□□□□□ -1.21
COL9A3-209ENST00000469852 IMUPQ9GZP8 106 aa7.48□□□□□ -1.21
COL9A3-209ENST00000469852 COX6B2Q6YFQ2 88 aa7.47□□□□□ -1.21
COL9A3-209ENST00000469852 C7orf65Q6ZTY9 151 aa7.46□□□□□ -1.22
COL9A3-209ENST00000469852 MT1HP80294 61 aa7.45□□□□□ -1.22
COL9A3-209ENST00000469852 OCR1Q9BZK8 76 aa7.45□□□□□ -1.22
COL9A3-209ENST00000469852 TRAV22A0A0B4J277 110 aa7.44□□□□□ -1.22
COL9A3-209ENST00000469852 UQCRQO14949 82 aa7.44□□□□□ -1.22
COL9A3-209ENST00000469852 RBM12B-AS1Q9P1G2 102 aa7.42□□□□□ -1.22
COL9A3-209ENST00000469852 FAM236DA0A1B0GTK5 79 aa7.4□□□□□ -1.22
COL9A3-209ENST00000469852 FAM236AA0A1B0GUQ0 79 aa7.4□□□□□ -1.22
COL9A3-209ENST00000469852 FAM236BA0A1B0GV22 79 aa7.4□□□□□ -1.22
COL9A3-209ENST00000469852 H0Y9P7 68 aa7.4□□□□□ -1.22
COL9A3-209ENST00000469852 FAM236CP0DP71 79 aa7.4□□□□□ -1.22
COL9A3-209ENST00000469852 CRCT1Q9UGL9 99 aa7.39□□□□□ -1.23
COL9A3-209ENST00000469852 SCGB1A1P11684 91 aa7.38□□□□□ -1.23
COL9A3-209ENST00000469852 FSIP2Q5CZC0 6907 aa7.36□□□□□ -1.23
COL9A3-209ENST00000469852 CYP4F30PQ9H0H9 118 aa7.36□□□□□ -1.23
COL9A3-209ENST00000469852 LOC101927531A0A1B0GV80 90 aa7.35□□□□□ -1.23
COL9A3-209ENST00000469852 C4orf26Q17RF5 130 aa7.35□□□□□ -1.23
COL9A3-209ENST00000469852 ATOX1O00244 68 aa7.33□□□□□ -1.24
COL9A3-209ENST00000469852 LINC00208Q96KT6 92 aa7.32□□□□□ -1.24
COL9A3-209ENST00000469852 C1orf64Q8NEQ6 169 aa7.31□□□□□ -1.24
COL9A3-209ENST00000469852 C5orf47Q569G3 176 aa7.3□□□□□ -1.24
COL9A3-209ENST00000469852 MP68P56378 58 aa7.29□□□□□ -1.24
COL9A3-209ENST00000469852 KRTAP3-1Q9BYR8 98 aa7.29□□□□□ -1.24
COL9A3-209ENST00000469852 M0R2T5 61 aa7.28□□□□□ -1.24
COL9A3-209ENST00000469852 TRAV7A0A075B6U4 112 aa7.27□□□□□ -1.25
COL9A3-209ENST00000469852 KLKP1Q107X0 134 aa7.26□□□□□ -1.25
COL9A3-209ENST00000469852 SMIM20Q8N5G0 67 aa7.25□□□□□ -1.25
COL9A3-209ENST00000469852 KRTAP10-6P60371 365 aaPredicted RBP7.24□□□□□ -1.25
COL9A3-209ENST00000469852 H1FX-AS1Q4G0G2 97 aa7.24□□□□□ -1.25
COL9A3-209ENST00000469852 H3BPC8 53 aa7.22□□□□□ -1.25
COL9A3-209ENST00000469852 LORP23490 312 aaPredicted RBP7.21□□□□□ -1.26
COL9A3-209ENST00000469852 SERP2Q8N6R1 65 aa7.17□□□□□ -1.26
COL9A3-209ENST00000469852 SNURFQ9Y675 71 aa7.13□□□□□ -1.27
COL9A3-209ENST00000469852 C20orf197Q8N268 126 aa7.11□□□□□ -1.27
COL9A3-209ENST00000469852 KRTAP9-8Q9BYQ0 159 aa7.11□□□□□ -1.27
COL9A3-209ENST00000469852 LCA10Q71F78 164 aa7.09□□□□□ -1.27
COL9A3-209ENST00000469852 S4R3F8 94 aa7.09□□□□□ -1.27
COL9A3-209ENST00000469852 COX7CP15954 63 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 9069.9 ms