RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 A0A1B0GVX0 72 aa12.09□□□□□ -0.47
PTCH1-210ENST00000468211 FCGBPQ9Y6R7 5405 aaPredicted RBP12.07□□□□□ -0.48
PTCH1-210ENST00000468211 KRTAP9-3Q9BYQ3 159 aa12.07□□□□□ -0.48
PTCH1-210ENST00000468211 C8orf87E5RJ46 101 aa12.05□□□□□ -0.48
PTCH1-210ENST00000468211 KRTAP10-10P60014 251 aa12.03□□□□□ -0.48
PTCH1-210ENST00000468211 RBM3P98179 157 aaKnown RBP12.03□□□□□ -0.48
PTCH1-210ENST00000468211 ZCCHC13Q8WW36 166 aaKnown RBP12□□□□□ -0.49
PTCH1-210ENST00000468211 SCGB1C2P0DMR2 95 aa11.99□□□□□ -0.49
PTCH1-210ENST00000468211 KRTAP19-1Q8IUB9 90 aa11.99□□□□□ -0.49
PTCH1-210ENST00000468211 DSCR8Q96T75 97 aa11.99□□□□□ -0.49
PTCH1-210ENST00000468211 UQCR10Q9UDW1 63 aa11.99□□□□□ -0.49
PTCH1-210ENST00000468211 SPINK7P58062 85 aa11.96□□□□□ -0.49
PTCH1-210ENST00000468211 BAALC-AS2P0C853 105 aa11.95□□□□□ -0.5
PTCH1-210ENST00000468211 Q6ZQT0 140 aa11.93□□□□□ -0.5
PTCH1-210ENST00000468211 C9JAW5 83 aa11.92□□□□□ -0.5
PTCH1-210ENST00000468211 J3KT08 172 aa11.92□□□□□ -0.5
PTCH1-210ENST00000468211 MTURNQ8N3F0 131 aa11.9□□□□□ -0.5
PTCH1-210ENST00000468211 Q8N9P0 234 aaPredicted RBP11.9□□□□□ -0.5
PTCH1-210ENST00000468211 C21orf62-AS1Q17RA5 79 aa11.85□□□□□ -0.51
PTCH1-210ENST00000468211 C8orf17Q9NRJ1 99 aa11.84□□□□□ -0.51
PTCH1-210ENST00000468211 NDUFB1O75438 58 aa11.83□□□□□ -0.52
PTCH1-210ENST00000468211 TMA7Q9Y2S6 64 aaKnown RBP11.82□□□□□ -0.52
PTCH1-210ENST00000468211 NAA38Q9BRA0 125 aaKnown RBP11.81□□□□□ -0.52
PTCH1-210ENST00000468211 IGKV3D-7A0A0C4DH55 119 aa11.8□□□□□ -0.52
PTCH1-210ENST00000468211 A8MWP4 228 aa11.8□□□□□ -0.52
PTCH1-210ENST00000468211 WFDC13Q8IUB5 93 aa11.8□□□□□ -0.52
PTCH1-210ENST00000468211 LOC110117498A0A087WWA1 95 aa11.77□□□□□ -0.53
PTCH1-210ENST00000468211 LYRM7Q5U5X0 104 aa11.76□□□□□ -0.53
PTCH1-210ENST00000468211 JMJD7-PLA2G4BH0Y9G9 81 aa11.74□□□□□ -0.53
PTCH1-210ENST00000468211 ATXN8Q156A1 80 aa11.74□□□□□ -0.53
PTCH1-210ENST00000468211 Q6ZVQ6 151 aa11.73□□□□□ -0.53
PTCH1-210ENST00000468211 A0A1B0GW54 56 aa11.71□□□□□ -0.53
PTCH1-210ENST00000468211 C14orf132Q9NPU4 83 aa11.71□□□□□ -0.53
PTCH1-210ENST00000468211 KRTAP19-6Q3LI70 58 aa11.68□□□□□ -0.54
PTCH1-210ENST00000468211 PRR15Q8IV56 129 aa11.68□□□□□ -0.54
PTCH1-210ENST00000468211 MACF1Q9UPN3 7388 aaKnown RBP11.67□□□□□ -0.54
PTCH1-210ENST00000468211 PDE6GP18545 87 aa11.66□□□□□ -0.54
PTCH1-210ENST00000468211 MMP24-AS1A0A0U1RRL7 71 aa11.64□□□□□ -0.55
PTCH1-210ENST00000468211 M0R143 59 aa11.63□□□□□ -0.55
PTCH1-210ENST00000468211 SYNE2Q8WXH0 6885 aaKnown RBP11.63□□□□□ -0.55
PTCH1-210ENST00000468211 NREPQ16612 68 aa11.61□□□□□ -0.55
PTCH1-210ENST00000468211 MRPL34Q9BQ48 92 aaKnown RBP11.61□□□□□ -0.55
PTCH1-210ENST00000468211 TMEM254Q8TBM7 123 aa11.6□□□□□ -0.55
PTCH1-210ENST00000468211 LINC00846Q9NV44 126 aa11.55□□□□□ -0.56
PTCH1-210ENST00000468211 K7EQZ3 153 aa11.54□□□□□ -0.56
PTCH1-210ENST00000468211 H1FX-AS1Q4G0G2 97 aa11.54□□□□□ -0.56
PTCH1-210ENST00000468211 hDV103S1A0JD37 113 aa11.52□□□□□ -0.57
PTCH1-210ENST00000468211 NDUFS5O43920 106 aa11.5□□□□□ -0.57
PTCH1-210ENST00000468211 Q5W150 140 aa11.47□□□□□ -0.57
PTCH1-210ENST00000468211 IGKV2D-30A0A075B6S6 120 aa11.45□□□□□ -0.58
PTCH1-210ENST00000468211 IGKV2-30P06310 120 aa11.45□□□□□ -0.58
PTCH1-210ENST00000468211 BATFQ16520 125 aa11.41□□□□□ -0.58
PTCH1-210ENST00000468211 H3BT86 120 aa11.37□□□□□ -0.59
PTCH1-210ENST00000468211 BPY2O14599 106 aa11.37□□□□□ -0.59
PTCH1-210ENST00000468211 C7orf65Q6ZTY9 151 aa11.37□□□□□ -0.59
PTCH1-210ENST00000468211 SMIM6P0DI80 62 aa11.36□□□□□ -0.59
PTCH1-210ENST00000468211 Q8N9L7 120 aa11.35□□□□□ -0.59
PTCH1-210ENST00000468211 C9orf118A6NHY6 69 aa11.32□□□□□ -0.6
PTCH1-210ENST00000468211 C4orf26Q17RF5 130 aa11.3□□□□□ -0.6
PTCH1-210ENST00000468211 HCG22E2RYF7 251 aa11.29□□□□□ -0.6
PTCH1-210ENST00000468211 TAX1BP3O14907 124 aa11.29□□□□□ -0.6
PTCH1-210ENST00000468211 CASC2Q6XLA1 102 aa11.29□□□□□ -0.6
PTCH1-210ENST00000468211 A0A1W2PPM0 123 aa11.28□□□□□ -0.6
PTCH1-210ENST00000468211 KRTAP6-3Q3LI67 103 aa11.27□□□□□ -0.61
PTCH1-210ENST00000468211 TSTD3H0UI37 97 aa11.26□□□□□ -0.61
PTCH1-210ENST00000468211 C5orf47Q569G3 176 aa11.18□□□□□ -0.62
PTCH1-210ENST00000468211 KRTAP3-1Q9BYR8 98 aa11.18□□□□□ -0.62
PTCH1-210ENST00000468211 CXCL6P80162 114 aa11.17□□□□□ -0.62
PTCH1-210ENST00000468211 SMCPP49901 116 aaPredicted RBP11.16□□□□□ -0.62
PTCH1-210ENST00000468211 SPCS1Q9Y6A9 102 aa11.1□□□□□ -0.63
PTCH1-210ENST00000468211 MT1BP07438 61 aa11.09□□□□□ -0.63
PTCH1-210ENST00000468211 FAM236AA0A1B0GUQ0 79 aa11.08□□□□□ -0.64
PTCH1-210ENST00000468211 FAM236BA0A1B0GV22 79 aa11.08□□□□□ -0.64
PTCH1-210ENST00000468211 S4R3F8 94 aa11.06□□□□□ -0.64
PTCH1-210ENST00000468211 LCA10Q71F78 164 aa11.02□□□□□ -0.65
PTCH1-210ENST00000468211 C1orf64Q8NEQ6 169 aa11.02□□□□□ -0.65
PTCH1-210ENST00000468211 UBL5Q9BZL1 73 aa11.01□□□□□ -0.65
PTCH1-210ENST00000468211 A6NN06 94 aa11□□□□□ -0.65
PTCH1-210ENST00000468211 CSAG1Q6PB30 78 aa11□□□□□ -0.65
PTCH1-210ENST00000468211 PRO0461Q9UI25 63 aa11□□□□□ -0.65
PTCH1-210ENST00000468211 LOC105371267A0A1B0GV96 52 aa10.99□□□□□ -0.65
PTCH1-210ENST00000468211 KRTAP19-8Q3LI54 63 aa10.99□□□□□ -0.65
PTCH1-210ENST00000468211 SPRR2GQ9BYE4 73 aa10.99□□□□□ -0.65
PTCH1-210ENST00000468211 Q5VV11 94 aa10.98□□□□□ -0.65
PTCH1-210ENST00000468211 NEBP20929 6669 aa10.94□□□□□ -0.66
PTCH1-210ENST00000468211 MUC12Q9UKN1 5478 aa10.88□□□□□ -0.67
PTCH1-210ENST00000468211 KRTAP3-3Q9BYR6 98 aa10.87□□□□□ -0.67
PTCH1-210ENST00000468211 KRTAP10-5P60370 271 aa10.86□□□□□ -0.67
PTCH1-210ENST00000468211 TP53AIP1Q9HCN2 124 aa10.86□□□□□ -0.67
PTCH1-210ENST00000468211 K7EP34 96 aa10.85□□□□□ -0.67
PTCH1-210ENST00000468211 KLKP1Q107X0 134 aa10.85□□□□□ -0.67
PTCH1-210ENST00000468211 COL5A1-AS1Q5SY13 56 aa10.81□□□□□ -0.68
PTCH1-210ENST00000468211 A0A087WVE0 104 aa10.79□□□□□ -0.68
PTCH1-210ENST00000468211 CYP4F30PQ9H0H9 118 aa10.76□□□□□ -0.69
PTCH1-210ENST00000468211 ETDBQ3ZM63 59 aa10.66□□□□□ -0.7
PTCH1-210ENST00000468211 KRTAP5-9P26371 169 aa10.65□□□□□ -0.7
PTCH1-210ENST00000468211 CRIPTQ9P021 101 aa10.63□□□□□ -0.71
PTCH1-210ENST00000468211 TRAV22A0A0B4J277 110 aa10.61□□□□□ -0.71
PTCH1-210ENST00000468211 F8W1H4 67 aa10.6□□□□□ -0.71
PTCH1-210ENST00000468211 GTF2H5Q6ZYL4 71 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms