RNA–Protein interactions for RNA: ENST00000465425.1

SYNE4-204, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 2

Gene SYNE4, Length 2,339 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-204ENST00000465425 CIRBP-AS1Q8TBR5 109 aa10.85□□□□□ -0.67
SYNE4-204ENST00000465425 IGLV7-46A0A075B6I9 117 aa10.84□□□□□ -0.67
SYNE4-204ENST00000465425 A0A087X002 238 aa10.81□□□□□ -0.68
SYNE4-204ENST00000465425 NOTCH2NLQ7Z3S9 236 aa10.81□□□□□ -0.68
SYNE4-204ENST00000465425 DNHD1Q96M86 4753 aa10.81□□□□□ -0.68
SYNE4-204ENST00000465425 CD164Q04900 197 aa10.78□□□□□ -0.68
SYNE4-204ENST00000465425 SSBP3-AS1Q7Z2R9 100 aa10.78□□□□□ -0.68
SYNE4-204ENST00000465425 COA5Q86WW8 74 aa10.76□□□□□ -0.69
SYNE4-204ENST00000465425 KRTAP10-2P60368 255 aa10.76□□□□□ -0.69
SYNE4-204ENST00000465425 A8MUN3 132 aa10.75□□□□□ -0.69
SYNE4-204ENST00000465425 C1orf195Q5TG92 126 aa10.74□□□□□ -0.69
SYNE4-204ENST00000465425 DNAH6Q9C0G6 4158 aa10.74□□□□□ -0.69
SYNE4-204ENST00000465425 Q8N9P0 234 aaPredicted RBP10.73□□□□□ -0.69
SYNE4-204ENST00000465425 LIMD2Q9BT23 127 aa10.73□□□□□ -0.69
SYNE4-204ENST00000465425 ALMS1Q8TCU4 4167 aa10.7□□□□□ -0.7
SYNE4-204ENST00000465425 LOC101927531A0A1B0GV80 90 aa10.68□□□□□ -0.7
SYNE4-204ENST00000465425 C8orf87E5RJ46 101 aa10.67□□□□□ -0.7
SYNE4-204ENST00000465425 Q5VV11 94 aa10.67□□□□□ -0.7
SYNE4-204ENST00000465425 DNAH11Q96DT5 4516 aa10.66□□□□□ -0.7
SYNE4-204ENST00000465425 PRR15LQ9BU68 103 aa10.66□□□□□ -0.7
SYNE4-204ENST00000465425 Q5W150 140 aa10.64□□□□□ -0.71
SYNE4-204ENST00000465425 Q6ZSA8 131 aa10.63□□□□□ -0.71
SYNE4-204ENST00000465425 DNAH5Q8TE73 4624 aa10.63□□□□□ -0.71
SYNE4-204ENST00000465425 KRTAP10-1P60331 282 aa10.62□□□□□ -0.71
SYNE4-204ENST00000465425 LINC00313P59037 77 aa10.62□□□□□ -0.71
SYNE4-204ENST00000465425 CHKB-CPT1BH3BT56 60 aa10.61□□□□□ -0.71
SYNE4-204ENST00000465425 KRTAP13-2Q52LG2 175 aa10.61□□□□□ -0.71
SYNE4-204ENST00000465425 KRTAP13-3Q3SY46 172 aa10.6□□□□□ -0.71
SYNE4-204ENST00000465425 HRES1P13985 223 aa10.58□□□□□ -0.72
SYNE4-204ENST00000465425 SEC61GP60059 68 aa10.56□□□□□ -0.72
SYNE4-204ENST00000465425 SPAG11AQ6PDA7 123 aa10.56□□□□□ -0.72
SYNE4-204ENST00000465425 FAM229AH3BQW9 127 aa10.53□□□□□ -0.72
SYNE4-204ENST00000465425 Q75L30 129 aa10.53□□□□□ -0.72
SYNE4-204ENST00000465425 PKD1P98161 4303 aa10.51□□□□□ -0.73
SYNE4-204ENST00000465425 LINC01558Q9Y6Z2 57 aa10.51□□□□□ -0.73
SYNE4-204ENST00000465425 KRTAP1-4P0C5Y4 121 aa10.5□□□□□ -0.73
SYNE4-204ENST00000465425 A6NED7 52 aa10.49□□□□□ -0.73
SYNE4-204ENST00000465425 RETNLBQ9BQ08 111 aa10.49□□□□□ -0.73
SYNE4-204ENST00000465425 LRP1BQ9NZR2 4599 aa10.48□□□□□ -0.73
SYNE4-204ENST00000465425 ACYP2P14621 99 aa10.47□□□□□ -0.73
SYNE4-204ENST00000465425 A8MU10 97 aa10.46□□□□□ -0.73
SYNE4-204ENST00000465425 C4orf48Q5BLP8 95 aa10.46□□□□□ -0.73
SYNE4-204ENST00000465425 FAT2Q9NYQ8 4349 aa10.46□□□□□ -0.74
SYNE4-204ENST00000465425 PLA2G1BP04054 148 aaKnown RBP10.45□□□□□ -0.74
SYNE4-204ENST00000465425 HYDINQ4G0P3 5121 aa10.45□□□□□ -0.74
SYNE4-204ENST00000465425 VPS13BQ7Z7G8 4022 aa10.44□□□□□ -0.74
SYNE4-204ENST00000465425 KRTAP21-3Q3LHN1 58 aa10.44□□□□□ -0.74
SYNE4-204ENST00000465425 TYMSOSQ8TAI1 123 aa10.43□□□□□ -0.74
SYNE4-204ENST00000465425 KRTAP16-1A8MUX0 517 aa10.41□□□□□ -0.74
SYNE4-204ENST00000465425 PRR26Q8N8Z3 221 aa10.41□□□□□ -0.74
SYNE4-204ENST00000465425 IGKV2-30P06310 120 aa10.41□□□□□ -0.74
SYNE4-204ENST00000465425 DMAC1Q96GE9 116 aa10.4□□□□□ -0.74
SYNE4-204ENST00000465425 SPINK1P00995 79 aa10.38□□□□□ -0.75
SYNE4-204ENST00000465425 LCA10Q71F78 164 aa10.37□□□□□ -0.75
SYNE4-204ENST00000465425 PMAIP1Q13794 54 aa10.36□□□□□ -0.75
SYNE4-204ENST00000465425 SPTSSBQ8NFR3 76 aa10.35□□□□□ -0.75
SYNE4-204ENST00000465425 CDC42SE1Q9NRR8 79 aa10.34□□□□□ -0.75
SYNE4-204ENST00000465425 IGKV2D-30A0A075B6S6 120 aa10.32□□□□□ -0.76
SYNE4-204ENST00000465425 ATP11AUNQ6ZP68 121 aa10.32□□□□□ -0.76
SYNE4-204ENST00000465425 SPINK7P58062 85 aa10.28□□□□□ -0.76
SYNE4-204ENST00000465425 LINC00304Q8N9R0 145 aa10.27□□□□□ -0.77
SYNE4-204ENST00000465425 PKHD1P08F94 4074 aa10.25□□□□□ -0.77
SYNE4-204ENST00000465425 RPS29P62273 56 aaKnown RBP10.22□□□□□ -0.77
SYNE4-204ENST00000465425 C7orf65Q6ZTY9 151 aa10.21□□□□□ -0.77
SYNE4-204ENST00000465425 SMR3BP02814 79 aaPredicted RBP10.2□□□□□ -0.78
SYNE4-204ENST00000465425 A0A1B0GU69 56 aa10.18□□□□□ -0.78
SYNE4-204ENST00000465425 A6NN06 94 aa10.11□□□□□ -0.79
SYNE4-204ENST00000465425 KTN1-AS1Q86SY8 53 aa10.11□□□□□ -0.79
SYNE4-204ENST00000465425 SACSQ9NZJ4 4579 aa10.09□□□□□ -0.79
SYNE4-204ENST00000465425 C9orf92A6NGG3 77 aa10.05□□□□□ -0.8
SYNE4-204ENST00000465425 Q8N1X5 172 aa10.05□□□□□ -0.8
SYNE4-204ENST00000465425 A0A1B0GVY2 172 aa10.04□□□□□ -0.8
SYNE4-204ENST00000465425 DYNC1H1Q14204 4646 aaKnown RBP10.01□□□□□ -0.81
SYNE4-204ENST00000465425 UQCR11O14957 56 aa10□□□□□ -0.81
SYNE4-204ENST00000465425 KRTAP10-4P60372 401 aaPredicted RBP9.99□□□□□ -0.81
SYNE4-204ENST00000465425 C20orf166-AS1Q96NR2 134 aa9.99□□□□□ -0.81
SYNE4-204ENST00000465425 A8MUU9 505 aa9.98□□□□□ -0.81
SYNE4-204ENST00000465425 SPATA8Q6RVD6 105 aa9.96□□□□□ -0.82
SYNE4-204ENST00000465425 MIR22HGQ0VDD5 57 aa9.95□□□□□ -0.82
SYNE4-204ENST00000465425 FAT1Q14517 4588 aa9.94□□□□□ -0.82
SYNE4-204ENST00000465425 PKHD1L1Q86WI1 4243 aa9.92□□□□□ -0.82
SYNE4-204ENST00000465425 RBM12B-AS1Q9P1G2 102 aa9.91□□□□□ -0.82
SYNE4-204ENST00000465425 APOBP04114 4563 aaKnown RBP9.91□□□□□ -0.82
SYNE4-204ENST00000465425 KRTAP3-1Q9BYR8 98 aa9.78□□□□□ -0.84
SYNE4-204ENST00000465425 RYR2Q92736 4967 aa9.78□□□□□ -0.84
SYNE4-204ENST00000465425 FLG2Q5D862 2391 aaPredicted RBP9.74□□□□□ -0.85
SYNE4-204ENST00000465425 KMT2CQ8NEZ4 4911 aaKnown RBP9.71□□□□□ -0.85
SYNE4-204ENST00000465425 COX6B2Q6YFQ2 88 aa9.68□□□□□ -0.86
SYNE4-204ENST00000465425 Q5VSD8 79 aa9.65□□□□□ -0.86
SYNE4-204ENST00000465425 PRAC1Q96KF2 57 aa9.65□□□□□ -0.86
SYNE4-204ENST00000465425 KRTAP10-8P60410 259 aa9.64□□□□□ -0.87
SYNE4-204ENST00000465425 ADM2Q7Z4H4 148 aa9.64□□□□□ -0.87
SYNE4-204ENST00000465425 A0A1B0GU33 70 aa9.63□□□□□ -0.87
SYNE4-204ENST00000465425 H0YAA0 97 aa9.61□□□□□ -0.87
SYNE4-204ENST00000465425 TNXBP22105 4242 aa9.6□□□□□ -0.87
SYNE4-204ENST00000465425 LRP1Q07954 4544 aaKnown RBP9.59□□□□□ -0.87
SYNE4-204ENST00000465425 H1FX-AS1Q4G0G2 97 aa9.57□□□□□ -0.88
SYNE4-204ENST00000465425 FAT3Q8TDW7 4589 aa9.57□□□□□ -0.88
SYNE4-204ENST00000465425 RPL37P61927 97 aaKnown RBP9.55□□□□□ -0.88
SYNE4-204ENST00000465425 HSPG2P98160 4391 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms