RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 Q75L30 129 aa12.22□□□□□ -0.45
CCDC28B-203ENST00000461819 IGHV6-1A0A0B4J1U7 121 aa12.21□□□□□ -0.45
CCDC28B-203ENST00000461819 PRO0461Q9UI25 63 aa12.21□□□□□ -0.45
CCDC28B-203ENST00000461819 A0A1B0GVX0 72 aa12.18□□□□□ -0.46
CCDC28B-203ENST00000461819 NREPQ16612 68 aa12.17□□□□□ -0.46
CCDC28B-203ENST00000461819 ATP11AUNQ6ZP68 121 aa12.17□□□□□ -0.46
CCDC28B-203ENST00000461819 C20orf166-AS1Q96NR2 134 aa12.16□□□□□ -0.46
CCDC28B-203ENST00000461819 NDUFB1O75438 58 aa12.14□□□□□ -0.47
CCDC28B-203ENST00000461819 A8MUU9 505 aa12.13□□□□□ -0.47
CCDC28B-203ENST00000461819 NOTCH2NLQ7Z3S9 236 aa12.13□□□□□ -0.47
CCDC28B-203ENST00000461819 C8orf87E5RJ46 101 aa12.12□□□□□ -0.47
CCDC28B-203ENST00000461819 FAT4Q6V0I7 4981 aa12.11□□□□□ -0.47
CCDC28B-203ENST00000461819 KRTAP16-1A8MUX0 517 aa12.1□□□□□ -0.47
CCDC28B-203ENST00000461819 F8W1H4 67 aa12.1□□□□□ -0.47
CCDC28B-203ENST00000461819 A8MWP4 228 aa12.09□□□□□ -0.47
CCDC28B-203ENST00000461819 IGKV3D-7A0A0C4DH55 119 aa12.03□□□□□ -0.48
CCDC28B-203ENST00000461819 ETDBQ3ZM63 59 aa12.01□□□□□ -0.49
CCDC28B-203ENST00000461819 Q6ZVQ6 151 aa12□□□□□ -0.49
CCDC28B-203ENST00000461819 C8orf17Q9NRJ1 99 aa12□□□□□ -0.49
CCDC28B-203ENST00000461819 BPY2O14599 106 aa11.99□□□□□ -0.49
CCDC28B-203ENST00000461819 PRR15Q8IV56 129 aa11.98□□□□□ -0.49
CCDC28B-203ENST00000461819 UBL5Q9BZL1 73 aa11.94□□□□□ -0.5
CCDC28B-203ENST00000461819 LINC00846Q9NV44 126 aa11.94□□□□□ -0.5
CCDC28B-203ENST00000461819 K7EQZ3 153 aa11.93□□□□□ -0.5
CCDC28B-203ENST00000461819 LCE2AQ5TA79 106 aaPredicted RBP11.89□□□□□ -0.51
CCDC28B-203ENST00000461819 MMP24-AS1A0A0U1RRL7 71 aa11.88□□□□□ -0.51
CCDC28B-203ENST00000461819 Q8N9P0 234 aaPredicted RBP11.87□□□□□ -0.51
CCDC28B-203ENST00000461819 KRTAP19-2Q3LHN2 52 aa11.86□□□□□ -0.51
CCDC28B-203ENST00000461819 A0A1B0GV90 55 aa11.85□□□□□ -0.51
CCDC28B-203ENST00000461819 COX6B2Q6YFQ2 88 aa11.84□□□□□ -0.51
CCDC28B-203ENST00000461819 Q8N9L7 120 aa11.84□□□□□ -0.51
CCDC28B-203ENST00000461819 TMEM254Q8TBM7 123 aa11.84□□□□□ -0.51
CCDC28B-203ENST00000461819 hDV103S1A0JD37 113 aa11.83□□□□□ -0.52
CCDC28B-203ENST00000461819 LCE2CQ5TA81 110 aa11.83□□□□□ -0.52
CCDC28B-203ENST00000461819 ZCCHC13Q8WW36 166 aaKnown RBP11.83□□□□□ -0.52
CCDC28B-203ENST00000461819 MRPL34Q9BQ48 92 aaKnown RBP11.82□□□□□ -0.52
CCDC28B-203ENST00000461819 NDUFS5O43920 106 aa11.76□□□□□ -0.53
CCDC28B-203ENST00000461819 WFDC13Q8IUB5 93 aa11.76□□□□□ -0.53
CCDC28B-203ENST00000461819 CASC2Q6XLA1 102 aa11.74□□□□□ -0.53
CCDC28B-203ENST00000461819 ACYP1P07311 99 aa11.72□□□□□ -0.53
CCDC28B-203ENST00000461819 MT1HP80294 61 aa11.7□□□□□ -0.54
CCDC28B-203ENST00000461819 CXCL6P80162 114 aa11.69□□□□□ -0.54
CCDC28B-203ENST00000461819 FAM240AA0A1B0GVK7 77 aa11.68□□□□□ -0.54
CCDC28B-203ENST00000461819 HCG22E2RYF7 251 aa11.66□□□□□ -0.54
CCDC28B-203ENST00000461819 SPINK7P58062 85 aa11.64□□□□□ -0.55
CCDC28B-203ENST00000461819 HRES1P13985 223 aa11.63□□□□□ -0.55
CCDC28B-203ENST00000461819 RBM12B-AS1Q9P1G2 102 aa11.62□□□□□ -0.55
CCDC28B-203ENST00000461819 FAM236DA0A1B0GTK5 79 aa11.61□□□□□ -0.55
CCDC28B-203ENST00000461819 FAM236CP0DP71 79 aa11.61□□□□□ -0.55
CCDC28B-203ENST00000461819 FLGP20930 4061 aaPredicted RBP11.6□□□□□ -0.55
CCDC28B-203ENST00000461819 M0R2T5 61 aa11.59□□□□□ -0.55
CCDC28B-203ENST00000461819 ATP5EP2Q5VTU8 51 aa11.55□□□□□ -0.56
CCDC28B-203ENST00000461819 MPLKIPQ8TAP9 179 aa11.55□□□□□ -0.56
CCDC28B-203ENST00000461819 Q5W150 140 aa11.51□□□□□ -0.57
CCDC28B-203ENST00000461819 IGKV2D-30A0A075B6S6 120 aa11.47□□□□□ -0.57
CCDC28B-203ENST00000461819 IGKV2-30P06310 120 aa11.47□□□□□ -0.57
CCDC28B-203ENST00000461819 J3QR89 54 aa11.46□□□□□ -0.57
CCDC28B-203ENST00000461819 HIST1H4AP62805 103 aaKnown RBP11.46□□□□□ -0.57
CCDC28B-203ENST00000461819 C7orf65Q6ZTY9 151 aa11.45□□□□□ -0.58
CCDC28B-203ENST00000461819 LINC00643Q86TS7 51 aa11.45□□□□□ -0.58
CCDC28B-203ENST00000461819 KRTAP10-6P60371 365 aaPredicted RBP11.42□□□□□ -0.58
CCDC28B-203ENST00000461819 TP53AIP1Q9HCN2 124 aa11.42□□□□□ -0.58
CCDC28B-203ENST00000461819 LORP23490 312 aaPredicted RBP11.37□□□□□ -0.59
CCDC28B-203ENST00000461819 A0A087WVE0 104 aa11.31□□□□□ -0.6
CCDC28B-203ENST00000461819 KRTAP9-2Q9BYQ4 174 aa11.29□□□□□ -0.6
CCDC28B-203ENST00000461819 TRAV22A0A0B4J277 110 aa11.23□□□□□ -0.61
CCDC28B-203ENST00000461819 C4orf26Q17RF5 130 aa11.21□□□□□ -0.61
CCDC28B-203ENST00000461819 H1FX-AS1Q4G0G2 97 aa11.19□□□□□ -0.62
CCDC28B-203ENST00000461819 K7ERU9 68 aa11.18□□□□□ -0.62
CCDC28B-203ENST00000461819 UQCRQO14949 82 aa11.18□□□□□ -0.62
CCDC28B-203ENST00000461819 LCE2DQ5TA82 110 aaPredicted RBP11.15□□□□□ -0.62
CCDC28B-203ENST00000461819 LOC101927531A0A1B0GV80 90 aa11.12□□□□□ -0.63
CCDC28B-203ENST00000461819 H0Y9P7 68 aa11.12□□□□□ -0.63
CCDC28B-203ENST00000461819 CYP4F30PQ9H0H9 118 aa11.11□□□□□ -0.63
CCDC28B-203ENST00000461819 ATOX1O00244 68 aa11.1□□□□□ -0.63
CCDC28B-203ENST00000461819 KRTAP9-8Q9BYQ0 159 aa11.09□□□□□ -0.63
CCDC28B-203ENST00000461819 C1orf64Q8NEQ6 169 aa11.06□□□□□ -0.64
CCDC28B-203ENST00000461819 OCR1Q9BZK8 76 aa11.04□□□□□ -0.64
CCDC28B-203ENST00000461819 MT2AP02795 61 aa11.01□□□□□ -0.65
CCDC28B-203ENST00000461819 SCGB1A1P11684 91 aa11.01□□□□□ -0.65
CCDC28B-203ENST00000461819 MT-ATP8P03928 68 aa11□□□□□ -0.65
CCDC28B-203ENST00000461819 MP68P56378 58 aa10.99□□□□□ -0.65
CCDC28B-203ENST00000461819 KRTAP3-1Q9BYR8 98 aa10.99□□□□□ -0.65
CCDC28B-203ENST00000461819 IMUPQ9GZP8 106 aa10.99□□□□□ -0.65
CCDC28B-203ENST00000461819 LINC00208Q96KT6 92 aa10.97□□□□□ -0.65
CCDC28B-203ENST00000461819 S4R3F8 94 aa10.93□□□□□ -0.66
CCDC28B-203ENST00000461819 MT1FP04733 61 aa10.92□□□□□ -0.66
CCDC28B-203ENST00000461819 KRTAP10-10P60014 251 aa10.92□□□□□ -0.66
CCDC28B-203ENST00000461819 C5orf47Q569G3 176 aa10.92□□□□□ -0.66
CCDC28B-203ENST00000461819 FAM236AA0A1B0GUQ0 79 aa10.85□□□□□ -0.67
CCDC28B-203ENST00000461819 FAM236BA0A1B0GV22 79 aa10.85□□□□□ -0.67
CCDC28B-203ENST00000461819 H3BPC8 53 aa10.84□□□□□ -0.67
CCDC28B-203ENST00000461819 KLKP1Q107X0 134 aa10.83□□□□□ -0.68
CCDC28B-203ENST00000461819 LCA10Q71F78 164 aa10.83□□□□□ -0.68
CCDC28B-203ENST00000461819 FSIP2Q5CZC0 6907 aa10.82□□□□□ -0.68
CCDC28B-203ENST00000461819 KRTAP9-6A0A140TA67 174 aa10.79□□□□□ -0.68
CCDC28B-203ENST00000461819 CSAG1Q6PB30 78 aa10.78□□□□□ -0.68
CCDC28B-203ENST00000461819 SMIM20Q8N5G0 67 aa10.78□□□□□ -0.68
CCDC28B-203ENST00000461819 TRAV7A0A075B6U4 112 aa10.74□□□□□ -0.69
CCDC28B-203ENST00000461819 KRTAP9-3Q9BYQ3 159 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 129.8 ms