RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 SSPOA2VEC9 5147 aa3.79□□□□□ -1.8
USP54-208ENST00000461520 LST1O00453 97 aa3.78□□□□□ -1.8
USP54-208ENST00000461520 SPATA45Q537H7 98 aa3.78□□□□□ -1.8
USP54-208ENST00000461520 ATP11AUNQ6ZP68 121 aa3.78□□□□□ -1.8
USP54-208ENST00000461520 OBSCN-AS1Q96MR7 158 aa3.78□□□□□ -1.8
USP54-208ENST00000461520 HIST1H4GQ99525 98 aa3.78□□□□□ -1.8
USP54-208ENST00000461520 SNHG12Q9BXW3 62 aa3.78□□□□□ -1.8
USP54-208ENST00000461520 USH2AO75445 5202 aa3.78□□□□□ -1.8
USP54-208ENST00000461520 FLGP20930 4061 aaPredicted RBP3.78□□□□□ -1.8
USP54-208ENST00000461520 SMIM6P0DI80 62 aa3.77□□□□□ -1.81
USP54-208ENST00000461520 COX8AP10176 69 aa3.77□□□□□ -1.81
USP54-208ENST00000461520 DLEU1O43261 78 aa3.76□□□□□ -1.81
USP54-208ENST00000461520 SNCGO76070 127 aa3.76□□□□□ -1.81
USP54-208ENST00000461520 Q6Q795 121 aa3.76□□□□□ -1.81
USP54-208ENST00000461520 C2orf91Q6ZV80 131 aa3.76□□□□□ -1.81
USP54-208ENST00000461520 VAMP8Q9BV40 100 aa3.76□□□□□ -1.81
USP54-208ENST00000461520 SS18L2Q9UHA2 77 aa3.76□□□□□ -1.81
USP54-208ENST00000461520 H0YGX0 51 aa3.75□□□□□ -1.81
USP54-208ENST00000461520 H3BUT2 72 aa3.75□□□□□ -1.81
USP54-208ENST00000461520 PYY3Q5JQD4 70 aa3.75□□□□□ -1.81
USP54-208ENST00000461520 TEN1Q86WV5 123 aa3.75□□□□□ -1.81
USP54-208ENST00000461520 RAB37Q96AX2 223 aa3.74□□□□□ -1.81
USP54-208ENST00000461520 Q96NJ1 140 aa3.74□□□□□ -1.81
USP54-208ENST00000461520 A0A0B4J2C4 111 aa3.73□□□□□ -1.81
USP54-208ENST00000461520 NDUFV3P56181 108 aaKnown RBP3.73□□□□□ -1.81
USP54-208ENST00000461520 C20orf166-AS1Q96NR2 134 aa3.73□□□□□ -1.81
USP54-208ENST00000461520 HIGD1BQ9P298 99 aa3.73□□□□□ -1.81
USP54-208ENST00000461520 PRO0461Q9UI25 63 aa3.73□□□□□ -1.81
USP54-208ENST00000461520 A0A1B0GX51 115 aa3.72□□□□□ -1.81
USP54-208ENST00000461520 A8MUU9 505 aa3.72□□□□□ -1.81
USP54-208ENST00000461520 FXYD2P54710 66 aa3.72□□□□□ -1.81
USP54-208ENST00000461520 A0A087WSZ3 146 aa3.71□□□□□ -1.82
USP54-208ENST00000461520 H3BMG7 143 aa3.71□□□□□ -1.82
USP54-208ENST00000461520 K7ERJ3 54 aa3.71□□□□□ -1.82
USP54-208ENST00000461520 CEND1Q8N111 149 aa3.7□□□□□ -1.82
USP54-208ENST00000461520 SYNE2Q8WXH0 6885 aaKnown RBP3.69□□□□□ -1.82
USP54-208ENST00000461520 TRBV20-1A0A075B6N2 111 aa3.69□□□□□ -1.82
USP54-208ENST00000461520 FABP2P12104 132 aa3.69□□□□□ -1.82
USP54-208ENST00000461520 KRTAP5-5Q701N2 237 aaPredicted RBP3.69□□□□□ -1.82
USP54-208ENST00000461520 PRO1854Q9UHT4 67 aa3.69□□□□□ -1.82
USP54-208ENST00000461520 FCGBPQ9Y6R7 5405 aaPredicted RBP3.67□□□□□ -1.82
USP54-208ENST00000461520 A0A1W2PNM2 257 aa3.67□□□□□ -1.82
USP54-208ENST00000461520 H3BQ85 93 aa3.67□□□□□ -1.82
USP54-208ENST00000461520 LINC00313P59037 77 aa3.67□□□□□ -1.82
USP54-208ENST00000461520 MACF1Q9UPN3 7388 aaKnown RBP3.67□□□□□ -1.82
USP54-208ENST00000461520 TRBV7-4A0A0J9YYF1 115 aa3.66□□□□□ -1.82
USP54-208ENST00000461520 A0A1B0GV72 72 aa3.66□□□□□ -1.82
USP54-208ENST00000461520 DNAL4O96015 105 aa3.66□□□□□ -1.82
USP54-208ENST00000461520 ANKRD29Q8N6D5 301 aa3.66□□□□□ -1.82
USP54-208ENST00000461520 SIGMAR1Q99720 223 aa3.66□□□□□ -1.82
USP54-208ENST00000461520 IGKV4-1P06312 121 aa3.65□□□□□ -1.83
USP54-208ENST00000461520 HSD52Q0P140 79 aa3.65□□□□□ -1.83
USP54-208ENST00000461520 ORMDL1Q9P0S3 153 aa3.65□□□□□ -1.83
USP54-208ENST00000461520 TMEM256-PLSCR3K7ERE1 68 aa3.64□□□□□ -1.83
USP54-208ENST00000461520 OCR1Q9BZK8 76 aa3.64□□□□□ -1.83
USP54-208ENST00000461520 UQCR10Q9UDW1 63 aa3.64□□□□□ -1.83
USP54-208ENST00000461520 COX6CP09669 75 aa3.63□□□□□ -1.83
USP54-208ENST00000461520 KRTAP5-2Q701N4 177 aa3.63□□□□□ -1.83
USP54-208ENST00000461520 LINC00472Q9H8W2 130 aa3.63□□□□□ -1.83
USP54-208ENST00000461520 FAM236DA0A1B0GTK5 79 aa3.62□□□□□ -1.83
USP54-208ENST00000461520 A0A1B0GV90 55 aa3.62□□□□□ -1.83
USP54-208ENST00000461520 TRACP01848 142 aa3.62□□□□□ -1.83
USP54-208ENST00000461520 CCKP06307 115 aa3.62□□□□□ -1.83
USP54-208ENST00000461520 FAM236CP0DP71 79 aa3.62□□□□□ -1.83
USP54-208ENST00000461520 PSMB2P49721 201 aa3.62□□□□□ -1.83
USP54-208ENST00000461520 NAA38Q9BRA0 125 aaKnown RBP3.62□□□□□ -1.83
USP54-208ENST00000461520 RBM12B-AS1Q9P1G2 102 aa3.62□□□□□ -1.83
USP54-208ENST00000461520 TSTD3H0UI37 97 aa3.61□□□□□ -1.83
USP54-208ENST00000461520 DEFB116Q30KQ4 102 aa3.61□□□□□ -1.83
USP54-208ENST00000461520 IGHV6-1A0A0B4J1U7 121 aa3.6□□□□□ -1.83
USP54-208ENST00000461520 HRES1P13985 223 aa3.6□□□□□ -1.83
USP54-208ENST00000461520 C8orf87E5RJ46 101 aa3.59□□□□□ -1.83
USP54-208ENST00000461520 MT2AP02795 61 aa3.59□□□□□ -1.83
USP54-208ENST00000461520 A0A1B0GVX0 72 aa3.58□□□□□ -1.84
USP54-208ENST00000461520 RBM3P98179 157 aaKnown RBP3.58□□□□□ -1.84
USP54-208ENST00000461520 MTURNQ8N3F0 131 aa3.57□□□□□ -1.84
USP54-208ENST00000461520 DSCR8Q96T75 97 aa3.57□□□□□ -1.84
USP54-208ENST00000461520 VPS25Q9BRG1 176 aa3.57□□□□□ -1.84
USP54-208ENST00000461520 J3KT08 172 aa3.56□□□□□ -1.84
USP54-208ENST00000461520 MT1FP04733 61 aa3.56□□□□□ -1.84
USP54-208ENST00000461520 SCGB1C2P0DMR2 95 aa3.56□□□□□ -1.84
USP54-208ENST00000461520 BATFQ16520 125 aa3.56□□□□□ -1.84
USP54-208ENST00000461520 C9JAW5 83 aa3.55□□□□□ -1.84
USP54-208ENST00000461520 M0R143 59 aa3.55□□□□□ -1.84
USP54-208ENST00000461520 ZCCHC13Q8WW36 166 aaKnown RBP3.55□□□□□ -1.84
USP54-208ENST00000461520 KRTAP10-10P60014 251 aa3.54□□□□□ -1.84
USP54-208ENST00000461520 Q6ZQT0 140 aa3.54□□□□□ -1.84
USP54-208ENST00000461520 A0A1B0GW54 56 aa3.53□□□□□ -1.84
USP54-208ENST00000461520 NDUFB1O75438 58 aa3.53□□□□□ -1.84
USP54-208ENST00000461520 BAALC-AS2P0C853 105 aa3.53□□□□□ -1.84
USP54-208ENST00000461520 SPINK7P58062 85 aa3.53□□□□□ -1.84
USP54-208ENST00000461520 JMJD7-PLA2G4BH0Y9G9 81 aa3.52□□□□□ -1.85
USP54-208ENST00000461520 A8MWP4 228 aa3.51□□□□□ -1.85
USP54-208ENST00000461520 Q6ZVQ6 151 aa3.51□□□□□ -1.85
USP54-208ENST00000461520 ATXN8Q156A1 80 aa3.5□□□□□ -1.85
USP54-208ENST00000461520 C8orf17Q9NRJ1 99 aa3.5□□□□□ -1.85
USP54-208ENST00000461520 LOC110117498A0A087WWA1 95 aa3.49□□□□□ -1.85
USP54-208ENST00000461520 PDE6GP18545 87 aa3.49□□□□□ -1.85
USP54-208ENST00000461520 C5orf47Q569G3 176 aa3.49□□□□□ -1.85
USP54-208ENST00000461520 LYRM7Q5U5X0 104 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms