RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.91□□□□□ -1.3
HDAC4-207ENST00000461113 Q6ZQT0 140 aa6.91□□□□□ -1.3
HDAC4-207ENST00000461113 OBSCN-AS1Q96MR7 158 aa6.91□□□□□ -1.3
HDAC4-207ENST00000461113 KRTAP4-1Q9BYQ7 146 aa6.91□□□□□ -1.3
HDAC4-207ENST00000461113 SIGMAR1Q99720 223 aa6.9□□□□□ -1.3
HDAC4-207ENST00000461113 IGKV4-1P06312 121 aa6.88□□□□□ -1.31
HDAC4-207ENST00000461113 SEC61BP60468 96 aaKnown RBP6.88□□□□□ -1.31
HDAC4-207ENST00000461113 F8W1H4 67 aa6.86□□□□□ -1.31
HDAC4-207ENST00000461113 J3KT08 172 aa6.86□□□□□ -1.31
HDAC4-207ENST00000461113 XP32Q5T750 250 aa6.85□□□□□ -1.31
HDAC4-207ENST00000461113 NREPQ16612 68 aa6.84□□□□□ -1.31
HDAC4-207ENST00000461113 LINC00472Q9H8W2 130 aa6.84□□□□□ -1.31
HDAC4-207ENST00000461113 DEFB116Q30KQ4 102 aa6.83□□□□□ -1.32
HDAC4-207ENST00000461113 Q96NJ1 140 aa6.83□□□□□ -1.32
HDAC4-207ENST00000461113 PRO0461Q9UI25 63 aa6.83□□□□□ -1.32
HDAC4-207ENST00000461113 NDUFB1O75438 58 aa6.82□□□□□ -1.32
HDAC4-207ENST00000461113 LINC00313P59037 77 aa6.8□□□□□ -1.32
HDAC4-207ENST00000461113 MT1HP80294 61 aa6.79□□□□□ -1.32
HDAC4-207ENST00000461113 IGHV6-1A0A0B4J1U7 121 aa6.78□□□□□ -1.32
HDAC4-207ENST00000461113 C8orf87E5RJ46 101 aa6.77□□□□□ -1.33
HDAC4-207ENST00000461113 DSCR10P59022 87 aa6.77□□□□□ -1.33
HDAC4-207ENST00000461113 A0A1B0GVX0 72 aa6.76□□□□□ -1.33
HDAC4-207ENST00000461113 RPL37P61927 97 aaKnown RBP6.76□□□□□ -1.33
HDAC4-207ENST00000461113 ETDBQ3ZM63 59 aa6.76□□□□□ -1.33
HDAC4-207ENST00000461113 ATP11AUNQ6ZP68 121 aa6.76□□□□□ -1.33
HDAC4-207ENST00000461113 KRTAP10-6P60371 365 aaPredicted RBP6.75□□□□□ -1.33
HDAC4-207ENST00000461113 UBL5Q9BZL1 73 aa6.75□□□□□ -1.33
HDAC4-207ENST00000461113 A8MWP4 228 aa6.74□□□□□ -1.33
HDAC4-207ENST00000461113 KRTAP19-2Q3LHN2 52 aa6.74□□□□□ -1.33
HDAC4-207ENST00000461113 PCOTHQ58A44 107 aa6.74□□□□□ -1.33
HDAC4-207ENST00000461113 Q75L30 129 aa6.74□□□□□ -1.33
HDAC4-207ENST00000461113 BPY2O14599 106 aa6.73□□□□□ -1.33
HDAC4-207ENST00000461113 A0A1B0GV90 55 aa6.7□□□□□ -1.34
HDAC4-207ENST00000461113 Q6ZVQ6 151 aa6.7□□□□□ -1.34
HDAC4-207ENST00000461113 C20orf166-AS1Q96NR2 134 aa6.7□□□□□ -1.34
HDAC4-207ENST00000461113 A8MUU9 505 aa6.68□□□□□ -1.34
HDAC4-207ENST00000461113 PRR15Q8IV56 129 aa6.68□□□□□ -1.34
HDAC4-207ENST00000461113 IGKV3D-7A0A0C4DH55 119 aa6.67□□□□□ -1.34
HDAC4-207ENST00000461113 C8orf17Q9NRJ1 99 aa6.67□□□□□ -1.34
HDAC4-207ENST00000461113 LINC00846Q9NV44 126 aa6.67□□□□□ -1.34
HDAC4-207ENST00000461113 SSPOA2VEC9 5147 aa6.66□□□□□ -1.34
HDAC4-207ENST00000461113 ACYP1P07311 99 aa6.66□□□□□ -1.34
HDAC4-207ENST00000461113 NOTCH2NLQ7Z3S9 236 aa6.66□□□□□ -1.34
HDAC4-207ENST00000461113 M0R2T5 61 aa6.64□□□□□ -1.35
HDAC4-207ENST00000461113 KRTAP16-1A8MUX0 517 aa6.63□□□□□ -1.35
HDAC4-207ENST00000461113 USH2AO75445 5202 aa6.63□□□□□ -1.35
HDAC4-207ENST00000461113 K7EQZ3 153 aa6.62□□□□□ -1.35
HDAC4-207ENST00000461113 FAM240AA0A1B0GVK7 77 aa6.6□□□□□ -1.35
HDAC4-207ENST00000461113 hDV103S1A0JD37 113 aa6.6□□□□□ -1.35
HDAC4-207ENST00000461113 TMEM254Q8TBM7 123 aa6.6□□□□□ -1.35
HDAC4-207ENST00000461113 J3QR89 54 aa6.59□□□□□ -1.35
HDAC4-207ENST00000461113 MRPL34Q9BQ48 92 aaKnown RBP6.59□□□□□ -1.35
HDAC4-207ENST00000461113 KRTAP4-8Q9BYQ9 185 aa6.59□□□□□ -1.35
HDAC4-207ENST00000461113 FCGBPQ9Y6R7 5405 aaPredicted RBP6.59□□□□□ -1.36
HDAC4-207ENST00000461113 NDUFS5O43920 106 aa6.58□□□□□ -1.36
HDAC4-207ENST00000461113 CXCL6P80162 114 aa6.58□□□□□ -1.36
HDAC4-207ENST00000461113 Q8N9P0 234 aaPredicted RBP6.58□□□□□ -1.36
HDAC4-207ENST00000461113 MMP24-AS1A0A0U1RRL7 71 aa6.57□□□□□ -1.36
HDAC4-207ENST00000461113 CASC2Q6XLA1 102 aa6.56□□□□□ -1.36
HDAC4-207ENST00000461113 Q8N9L7 120 aa6.56□□□□□ -1.36
HDAC4-207ENST00000461113 WFDC13Q8IUB5 93 aa6.55□□□□□ -1.36
HDAC4-207ENST00000461113 ZCCHC13Q8WW36 166 aaKnown RBP6.55□□□□□ -1.36
HDAC4-207ENST00000461113 ATP5EP2Q5VTU8 51 aa6.54□□□□□ -1.36
HDAC4-207ENST00000461113 HCG22E2RYF7 251 aa6.53□□□□□ -1.36
HDAC4-207ENST00000461113 SYNE2Q8WXH0 6885 aaKnown RBP6.53□□□□□ -1.36
HDAC4-207ENST00000461113 COX6B2Q6YFQ2 88 aa6.52□□□□□ -1.37
HDAC4-207ENST00000461113 MACF1Q9UPN3 7388 aaKnown RBP6.52□□□□□ -1.37
HDAC4-207ENST00000461113 FLGP20930 4061 aaPredicted RBP6.5□□□□□ -1.37
HDAC4-207ENST00000461113 LINC00643Q86TS7 51 aa6.49□□□□□ -1.37
HDAC4-207ENST00000461113 HIST1H4AP62805 103 aaKnown RBP6.47□□□□□ -1.37
HDAC4-207ENST00000461113 RBM12B-AS1Q9P1G2 102 aa6.46□□□□□ -1.38
HDAC4-207ENST00000461113 SPINK7P58062 85 aa6.44□□□□□ -1.38
HDAC4-207ENST00000461113 TP53AIP1Q9HCN2 124 aa6.44□□□□□ -1.38
HDAC4-207ENST00000461113 FAM236DA0A1B0GTK5 79 aa6.43□□□□□ -1.38
HDAC4-207ENST00000461113 FAM236CP0DP71 79 aa6.43□□□□□ -1.38
HDAC4-207ENST00000461113 KRTAP19-1Q8IUB9 90 aa6.43□□□□□ -1.38
HDAC4-207ENST00000461113 K7ERU9 68 aa6.41□□□□□ -1.38
HDAC4-207ENST00000461113 IGKV2D-30A0A075B6S6 120 aa6.37□□□□□ -1.39
HDAC4-207ENST00000461113 IGKV2-30P06310 120 aa6.37□□□□□ -1.39
HDAC4-207ENST00000461113 C7orf65Q6ZTY9 151 aa6.37□□□□□ -1.39
HDAC4-207ENST00000461113 HRES1P13985 223 aa6.36□□□□□ -1.39
HDAC4-207ENST00000461113 Q5W150 140 aa6.35□□□□□ -1.39
HDAC4-207ENST00000461113 KRTAP9-8Q9BYQ0 159 aa6.33□□□□□ -1.4
HDAC4-207ENST00000461113 A0A087WVE0 104 aa6.31□□□□□ -1.4
HDAC4-207ENST00000461113 UQCRQO14949 82 aa6.31□□□□□ -1.4
HDAC4-207ENST00000461113 LCE3BQ5TA77 95 aa6.3□□□□□ -1.4
HDAC4-207ENST00000461113 MPLKIPQ8TAP9 179 aa6.3□□□□□ -1.4
HDAC4-207ENST00000461113 SCGB1A1P11684 91 aa6.29□□□□□ -1.4
HDAC4-207ENST00000461113 KRTAP4-12Q9BQ66 201 aa6.29□□□□□ -1.4
HDAC4-207ENST00000461113 TRAV22A0A0B4J277 110 aa6.28□□□□□ -1.4
HDAC4-207ENST00000461113 ATOX1O00244 68 aa6.27□□□□□ -1.41
HDAC4-207ENST00000461113 IMUPQ9GZP8 106 aa6.27□□□□□ -1.41
HDAC4-207ENST00000461113 KRTAP6-3Q3LI67 103 aa6.25□□□□□ -1.41
HDAC4-207ENST00000461113 LOC101927531A0A1B0GV80 90 aa6.24□□□□□ -1.41
HDAC4-207ENST00000461113 H0Y9P7 68 aa6.23□□□□□ -1.41
HDAC4-207ENST00000461113 MP68P56378 58 aa6.22□□□□□ -1.41
HDAC4-207ENST00000461113 NEBP20929 6669 aa6.2□□□□□ -1.42
HDAC4-207ENST00000461113 MT-ATP8P03928 68 aa6.2□□□□□ -1.42
HDAC4-207ENST00000461113 C4orf26Q17RF5 130 aa6.2□□□□□ -1.42
HDAC4-207ENST00000461113 H1FX-AS1Q4G0G2 97 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms