RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	RTL8C	O15255	209 aa		5.33	□□□□□ -1.56
SYNE1-215	ENST00000460912	PHF5A	Q7RTV0	110 aa	Known RBP	5.33	□□□□□ -1.56
SYNE1-215	ENST00000460912	MP68	P56378	58 aa		5.33	□□□□□ -1.56
SYNE1-215	ENST00000460912	PRLH	P81277	87 aa		5.33	□□□□□ -1.56
SYNE1-215	ENST00000460912	RETNLB	Q9BQ08	111 aa		5.33	□□□□□ -1.56
SYNE1-215	ENST00000460912	NDUFS5	O43920	106 aa		5.32	□□□□□ -1.56
SYNE1-215	ENST00000460912	EPPK1	P58107	5090 aa	Known RBP	5.31	□□□□□ -1.56
SYNE1-215	ENST00000460912	C14orf177	Q52M58	125 aa		5.3	□□□□□ -1.56
SYNE1-215	ENST00000460912	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	5.3	□□□□□ -1.56
SYNE1-215	ENST00000460912	PRR26	Q8N8Z3	221 aa		5.29	□□□□□ -1.56
SYNE1-215	ENST00000460912	PSCA	O43653	123 aa		5.28	□□□□□ -1.56
SYNE1-215	ENST00000460912	ADM2	Q7Z4H4	148 aa		5.28	□□□□□ -1.56
SYNE1-215	ENST00000460912	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	5.28	□□□□□ -1.56
SYNE1-215	ENST00000460912	C7orf65	Q6ZTY9	151 aa		5.27	□□□□□ -1.57
SYNE1-215	ENST00000460912	LCA10	Q71F78	164 aa		5.27	□□□□□ -1.57
SYNE1-215	ENST00000460912		Q6ZSA8	131 aa		5.27	□□□□□ -1.57
SYNE1-215	ENST00000460912	LIMD2	Q9BT23	127 aa		5.27	□□□□□ -1.57
SYNE1-215	ENST00000460912	PLAC8	Q9NZF1	115 aa		5.27	□□□□□ -1.57
SYNE1-215	ENST00000460912		A0A087WTM6	91 aa		5.26	□□□□□ -1.57
SYNE1-215	ENST00000460912	CYP4F30P	Q9H0H9	118 aa		5.26	□□□□□ -1.57
SYNE1-215	ENST00000460912	RPL37A	P61513	92 aa	Known RBP	5.25	□□□□□ -1.57
SYNE1-215	ENST00000460912	CASC2	Q6XLA1	102 aa		5.25	□□□□□ -1.57
SYNE1-215	ENST00000460912	IGKV2-24	A0A0C4DH68	120 aa		5.25	□□□□□ -1.57
SYNE1-215	ENST00000460912	MMP24-AS1	A0A0U1RRL7	71 aa		5.24	□□□□□ -1.57
SYNE1-215	ENST00000460912	hDV103S1	A0JD37	113 aa		5.24	□□□□□ -1.57
SYNE1-215	ENST00000460912	RYR1	P21817	5038 aa		5.24	□□□□□ -1.57
SYNE1-215	ENST00000460912	TNXB	P22105	4242 aa		5.24	□□□□□ -1.57
SYNE1-215	ENST00000460912		A8MWP4	228 aa		5.24	□□□□□ -1.57
SYNE1-215	ENST00000460912	LINC00313	P59037	77 aa		5.23	□□□□□ -1.57
SYNE1-215	ENST00000460912		A0A087WSZ3	146 aa		5.23	□□□□□ -1.57
SYNE1-215	ENST00000460912	IGLV5-52	A0A0A0MRZ9	124 aa		5.22	□□□□□ -1.57
SYNE1-215	ENST00000460912	LINC01554	Q52M75	96 aa		5.22	□□□□□ -1.57
SYNE1-215	ENST00000460912	KRTAP13-3	Q3SY46	172 aa		5.22	□□□□□ -1.57
SYNE1-215	ENST00000460912	MOBP	Q13875	183 aa		5.21	□□□□□ -1.58
SYNE1-215	ENST00000460912	ATP11AUN	Q6ZP68	121 aa		5.21	□□□□□ -1.58
SYNE1-215	ENST00000460912	KRTAP10-2	P60368	255 aa		5.2	□□□□□ -1.58
SYNE1-215	ENST00000460912		Q5VV11	94 aa		5.2	□□□□□ -1.58
SYNE1-215	ENST00000460912	KRTAP10-4	P60372	401 aa	Predicted RBP	5.19	□□□□□ -1.58
SYNE1-215	ENST00000460912	KRTAP17-1	Q9BYP8	105 aa		5.19	□□□□□ -1.58
SYNE1-215	ENST00000460912	UBE2DNL	Q8IWF7	75 aa		5.18	□□□□□ -1.58
SYNE1-215	ENST00000460912	CRIPT	Q9P021	101 aa		5.18	□□□□□ -1.58
SYNE1-215	ENST00000460912	PSORS1C2	Q9UIG4	136 aa		5.18	□□□□□ -1.58
SYNE1-215	ENST00000460912	C1orf134	Q5TEV5	83 aa		5.18	□□□□□ -1.58
SYNE1-215	ENST00000460912	SPANXA2-OT1	Q8N9U9	137 aa		5.18	□□□□□ -1.58
SYNE1-215	ENST00000460912		H3BPC8	53 aa		5.17	□□□□□ -1.58
SYNE1-215	ENST00000460912		Q1T7F1	81 aa		5.17	□□□□□ -1.58
SYNE1-215	ENST00000460912	LY6G6C	O95867	125 aa		5.16	□□□□□ -1.58
SYNE1-215	ENST00000460912		H0Y9P7	68 aa		5.16	□□□□□ -1.58
SYNE1-215	ENST00000460912	FAT1	Q14517	4588 aa		5.15	□□□□□ -1.58
SYNE1-215	ENST00000460912	ZNF861P	O60384	105 aa		5.14	□□□□□ -1.59
SYNE1-215	ENST00000460912	SPINK7	P58062	85 aa		5.14	□□□□□ -1.59
SYNE1-215	ENST00000460912	CSAG1	Q6PB30	78 aa		5.14	□□□□□ -1.59
SYNE1-215	ENST00000460912	NDUFB1	O75438	58 aa		5.13	□□□□□ -1.59
SYNE1-215	ENST00000460912	LOC101927531	A0A1B0GV80	90 aa		5.13	□□□□□ -1.59
SYNE1-215	ENST00000460912	KRTAP10-1	P60331	282 aa		5.13	□□□□□ -1.59
SYNE1-215	ENST00000460912	COA5	Q86WW8	74 aa		5.12	□□□□□ -1.59
SYNE1-215	ENST00000460912	HERC2	O95714	4834 aa		5.12	□□□□□ -1.59
SYNE1-215	ENST00000460912		A0A087X002	238 aa		5.12	□□□□□ -1.59
SYNE1-215	ENST00000460912	NOTCH2NL	Q7Z3S9	236 aa		5.12	□□□□□ -1.59
SYNE1-215	ENST00000460912		Q8N9P0	234 aa	Predicted RBP	5.11	□□□□□ -1.59
SYNE1-215	ENST00000460912		A0A0A0MQY5	61 aa		5.1	□□□□□ -1.59
SYNE1-215	ENST00000460912	SPINK1	P00995	79 aa		5.1	□□□□□ -1.59
SYNE1-215	ENST00000460912		A0A1B0GVX0	72 aa		5.1	□□□□□ -1.59
SYNE1-215	ENST00000460912	C8orf17	Q9NRJ1	99 aa		5.1	□□□□□ -1.59
SYNE1-215	ENST00000460912	IGLV7-43	P04211	117 aa		5.09	□□□□□ -1.59
SYNE1-215	ENST00000460912	BIRC6	Q9NR09	4857 aa		5.09	□□□□□ -1.59
SYNE1-215	ENST00000460912	IGLV7-46	A0A075B6I9	117 aa		5.09	□□□□□ -1.59
SYNE1-215	ENST00000460912	KRTAP1-4	P0C5Y4	121 aa		5.08	□□□□□ -1.6
SYNE1-215	ENST00000460912	CDC42SE1	Q9NRR8	79 aa		5.08	□□□□□ -1.6
SYNE1-215	ENST00000460912	KRTAP16-1	A8MUX0	517 aa		5.07	□□□□□ -1.6
SYNE1-215	ENST00000460912	KRTAP13-2	Q52LG2	175 aa		5.07	□□□□□ -1.6
SYNE1-215	ENST00000460912	ANAPC11	Q9NYG5	84 aa		5.07	□□□□□ -1.6
SYNE1-215	ENST00000460912	TP53AIP1	Q9HCN2	124 aa		5.06	□□□□□ -1.6
SYNE1-215	ENST00000460912	SPINT4	Q6UDR6	99 aa		5.05	□□□□□ -1.6
SYNE1-215	ENST00000460912	ABCA13	Q86UQ4	5058 aa		5.05	□□□□□ -1.6
SYNE1-215	ENST00000460912	IGLV9-49	A0A0B4J1Y8	123 aa		5.05	□□□□□ -1.6
SYNE1-215	ENST00000460912	CIRBP-AS1	Q8TBR5	109 aa		5.04	□□□□□ -1.6
SYNE1-215	ENST00000460912		A6NN06	94 aa		5.04	□□□□□ -1.6
SYNE1-215	ENST00000460912	CDK2AP2	O75956	126 aa		5.04	□□□□□ -1.6
SYNE1-215	ENST00000460912	SSBP3-AS1	Q7Z2R9	100 aa		5.04	□□□□□ -1.6
SYNE1-215	ENST00000460912		Q5W150	140 aa		5.03	□□□□□ -1.6
SYNE1-215	ENST00000460912	SPINK6	Q6UWN8	80 aa		5.03	□□□□□ -1.6
SYNE1-215	ENST00000460912	KIAA1109	Q2LD37	5005 aa		5.03	□□□□□ -1.6
SYNE1-215	ENST00000460912	MRPL34	Q9BQ48	92 aa	Known RBP	5.02	□□□□□ -1.61
SYNE1-215	ENST00000460912		A0A1B0GU69	56 aa		5.01	□□□□□ -1.61
SYNE1-215	ENST00000460912	MIR22HG	Q0VDD5	57 aa		4.98	□□□□□ -1.61
SYNE1-215	ENST00000460912	LRP1	Q07954	4544 aa	Known RBP	4.98	□□□□□ -1.61
SYNE1-215	ENST00000460912	IGHV6-1	A0A0B4J1U7	121 aa		4.96	□□□□□ -1.61
SYNE1-215	ENST00000460912		Q75L30	129 aa		4.96	□□□□□ -1.62
SYNE1-215	ENST00000460912	MYCBP2	O75592	4640 aa		4.96	□□□□□ -1.62
SYNE1-215	ENST00000460912	HRES1	P13985	223 aa		4.95	□□□□□ -1.62
SYNE1-215	ENST00000460912	LINC01558	Q9Y6Z2	57 aa		4.92	□□□□□ -1.62
SYNE1-215	ENST00000460912	RPS29	P62273	56 aa	Known RBP	4.91	□□□□□ -1.62
SYNE1-215	ENST00000460912	DMAC1	Q96GE9	116 aa		4.9	□□□□□ -1.62
SYNE1-215	ENST00000460912	IGKV2-30	P06310	120 aa		4.89	□□□□□ -1.63
SYNE1-215	ENST00000460912	NDUFAF8	A1L188	74 aa		4.88	□□□□□ -1.63
SYNE1-215	ENST00000460912	PCLO	Q9Y6V0	5065 aa		4.88	□□□□□ -1.63
SYNE1-215	ENST00000460912	UQCR11	O14957	56 aa		4.86	□□□□□ -1.63
SYNE1-215	ENST00000460912	KRTAP4-5	Q9BYR2	181 aa		4.84	□□□□□ -1.63
SYNE1-215	ENST00000460912	MUC17	Q685J3	4493 aa		4.84	□□□□□ -1.63

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