RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 SCGB1C2P0DMR2 95 aa11.35□□□□□ -0.59
PTPN4-207ENST00000460162 C21orf62-AS1Q17RA5 79 aa11.35□□□□□ -0.59
PTPN4-207ENST00000460162 MT2AP02795 61 aa11.34□□□□□ -0.59
PTPN4-207ENST00000460162 SSPOA2VEC9 5147 aa11.33□□□□□ -0.59
PTPN4-207ENST00000460162 J3KT08 172 aa11.32□□□□□ -0.6
PTPN4-207ENST00000460162 C9JAW5 83 aa11.28□□□□□ -0.6
PTPN4-207ENST00000460162 ZCCHC13Q8WW36 166 aaKnown RBP11.28□□□□□ -0.6
PTPN4-207ENST00000460162 BAALC-AS2P0C853 105 aa11.26□□□□□ -0.61
PTPN4-207ENST00000460162 MTURNQ8N3F0 131 aa11.26□□□□□ -0.61
PTPN4-207ENST00000460162 MT1FP04733 61 aa11.25□□□□□ -0.61
PTPN4-207ENST00000460162 Q6ZQT0 140 aa11.25□□□□□ -0.61
PTPN4-207ENST00000460162 TMA7Q9Y2S6 64 aaKnown RBP11.22□□□□□ -0.61
PTPN4-207ENST00000460162 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.21□□□□□ -0.61
PTPN4-207ENST00000460162 NDUFB1O75438 58 aa11.21□□□□□ -0.61
PTPN4-207ENST00000460162 Q8N9P0 234 aaPredicted RBP11.2□□□□□ -0.62
PTPN4-207ENST00000460162 SPINK7P58062 85 aa11.19□□□□□ -0.62
PTPN4-207ENST00000460162 A0A1B0GW54 56 aa11.18□□□□□ -0.62
PTPN4-207ENST00000460162 JMJD7-PLA2G4BH0Y9G9 81 aa11.18□□□□□ -0.62
PTPN4-207ENST00000460162 KRTAP10-10P60014 251 aa11.17□□□□□ -0.62
PTPN4-207ENST00000460162 ATXN8Q156A1 80 aa11.16□□□□□ -0.62
PTPN4-207ENST00000460162 KRTAP9-3Q9BYQ3 159 aa11.16□□□□□ -0.62
PTPN4-207ENST00000460162 LOC110117498A0A087WWA1 95 aa11.15□□□□□ -0.62
PTPN4-207ENST00000460162 A8MWP4 228 aa11.15□□□□□ -0.62
PTPN4-207ENST00000460162 LCE2BO14633 110 aa11.15□□□□□ -0.62
PTPN4-207ENST00000460162 C8orf17Q9NRJ1 99 aa11.14□□□□□ -0.63
PTPN4-207ENST00000460162 KRTAP9-7A8MTY7 169 aa11.13□□□□□ -0.63
PTPN4-207ENST00000460162 M0R143 59 aa11.13□□□□□ -0.63
PTPN4-207ENST00000460162 PDE6GP18545 87 aa11.11□□□□□ -0.63
PTPN4-207ENST00000460162 FCGBPQ9Y6R7 5405 aaPredicted RBP11.09□□□□□ -0.63
PTPN4-207ENST00000460162 IGKV3D-7A0A0C4DH55 119 aa11.08□□□□□ -0.64
PTPN4-207ENST00000460162 WFDC13Q8IUB5 93 aa11.08□□□□□ -0.64
PTPN4-207ENST00000460162 NAA38Q9BRA0 125 aaKnown RBP11.08□□□□□ -0.64
PTPN4-207ENST00000460162 LYRM7Q5U5X0 104 aa11.07□□□□□ -0.64
PTPN4-207ENST00000460162 Q6ZVQ6 151 aa11.05□□□□□ -0.64
PTPN4-207ENST00000460162 KRTAP19-1Q8IUB9 90 aa11.05□□□□□ -0.64
PTPN4-207ENST00000460162 C14orf132Q9NPU4 83 aa11.05□□□□□ -0.64
PTPN4-207ENST00000460162 PRR15Q8IV56 129 aa11.01□□□□□ -0.65
PTPN4-207ENST00000460162 NREPQ16612 68 aa10.98□□□□□ -0.65
PTPN4-207ENST00000460162 TMEM254Q8TBM7 123 aa10.96□□□□□ -0.65
PTPN4-207ENST00000460162 MMP24-AS1A0A0U1RRL7 71 aa10.95□□□□□ -0.66
PTPN4-207ENST00000460162 MRPL34Q9BQ48 92 aaKnown RBP10.95□□□□□ -0.66
PTPN4-207ENST00000460162 SMIM6P0DI80 62 aa10.91□□□□□ -0.66
PTPN4-207ENST00000460162 hDV103S1A0JD37 113 aa10.87□□□□□ -0.67
PTPN4-207ENST00000460162 K7EQZ3 153 aa10.87□□□□□ -0.67
PTPN4-207ENST00000460162 LINC00846Q9NV44 126 aa10.86□□□□□ -0.67
PTPN4-207ENST00000460162 MACF1Q9UPN3 7388 aaKnown RBP10.85□□□□□ -0.67
PTPN4-207ENST00000460162 H3BT86 120 aa10.84□□□□□ -0.67
PTPN4-207ENST00000460162 NDUFS5O43920 106 aa10.83□□□□□ -0.68
PTPN4-207ENST00000460162 KRTAP19-6Q3LI70 58 aa10.83□□□□□ -0.68
PTPN4-207ENST00000460162 H1FX-AS1Q4G0G2 97 aa10.82□□□□□ -0.68
PTPN4-207ENST00000460162 TSTD3H0UI37 97 aa10.81□□□□□ -0.68
PTPN4-207ENST00000460162 BATFQ16520 125 aa10.81□□□□□ -0.68
PTPN4-207ENST00000460162 BPY2O14599 106 aa10.77□□□□□ -0.69
PTPN4-207ENST00000460162 SYNE2Q8WXH0 6885 aaKnown RBP10.76□□□□□ -0.69
PTPN4-207ENST00000460162 C7orf65Q6ZTY9 151 aa10.76□□□□□ -0.69
PTPN4-207ENST00000460162 C9orf118A6NHY6 69 aa10.75□□□□□ -0.69
PTPN4-207ENST00000460162 IGKV2D-30A0A075B6S6 120 aa10.74□□□□□ -0.69
PTPN4-207ENST00000460162 IGKV2-30P06310 120 aa10.74□□□□□ -0.69
PTPN4-207ENST00000460162 A0A1W2PPM0 123 aa10.72□□□□□ -0.69
PTPN4-207ENST00000460162 Q5W150 140 aa10.7□□□□□ -0.7
PTPN4-207ENST00000460162 TAX1BP3O14907 124 aa10.69□□□□□ -0.7
PTPN4-207ENST00000460162 CASC2Q6XLA1 102 aa10.67□□□□□ -0.7
PTPN4-207ENST00000460162 Q8N9L7 120 aa10.65□□□□□ -0.7
PTPN4-207ENST00000460162 HCG22E2RYF7 251 aa10.63□□□□□ -0.71
PTPN4-207ENST00000460162 CXCL6P80162 114 aa10.6□□□□□ -0.71
PTPN4-207ENST00000460162 C4orf26Q17RF5 130 aa10.57□□□□□ -0.72
PTPN4-207ENST00000460162 SPCS1Q9Y6A9 102 aa10.56□□□□□ -0.72
PTPN4-207ENST00000460162 SMCPP49901 116 aaPredicted RBP10.51□□□□□ -0.73
PTPN4-207ENST00000460162 UBL5Q9BZL1 73 aa10.49□□□□□ -0.73
PTPN4-207ENST00000460162 LOC105371267A0A1B0GV96 52 aa10.45□□□□□ -0.74
PTPN4-207ENST00000460162 C5orf47Q569G3 176 aa10.44□□□□□ -0.74
PTPN4-207ENST00000460162 KRTAP6-3Q3LI67 103 aa10.42□□□□□ -0.74
PTPN4-207ENST00000460162 S4R3F8 94 aa10.41□□□□□ -0.74
PTPN4-207ENST00000460162 FAM236AA0A1B0GUQ0 79 aa10.4□□□□□ -0.74
PTPN4-207ENST00000460162 FAM236BA0A1B0GV22 79 aa10.4□□□□□ -0.74
PTPN4-207ENST00000460162 PRO0461Q9UI25 63 aa10.4□□□□□ -0.74
PTPN4-207ENST00000460162 KRTAP3-1Q9BYR8 98 aa10.39□□□□□ -0.75
PTPN4-207ENST00000460162 C1orf64Q8NEQ6 169 aa10.35□□□□□ -0.75
PTPN4-207ENST00000460162 K7EP34 96 aa10.34□□□□□ -0.75
PTPN4-207ENST00000460162 COL5A1-AS1Q5SY13 56 aa10.34□□□□□ -0.75
PTPN4-207ENST00000460162 CSAG1Q6PB30 78 aa10.34□□□□□ -0.75
PTPN4-207ENST00000460162 TP53AIP1Q9HCN2 124 aa10.33□□□□□ -0.76
PTPN4-207ENST00000460162 LCA10Q71F78 164 aa10.32□□□□□ -0.76
PTPN4-207ENST00000460162 SPRR2GQ9BYE4 73 aa10.28□□□□□ -0.76
PTPN4-207ENST00000460162 MT1BP07438 61 aa10.27□□□□□ -0.77
PTPN4-207ENST00000460162 Q5VV11 94 aa10.27□□□□□ -0.77
PTPN4-207ENST00000460162 A6NN06 94 aa10.25□□□□□ -0.77
PTPN4-207ENST00000460162 KRTAP19-8Q3LI54 63 aa10.24□□□□□ -0.77
PTPN4-207ENST00000460162 KLKP1Q107X0 134 aa10.18□□□□□ -0.78
PTPN4-207ENST00000460162 GTF2H5Q6ZYL4 71 aa10.17□□□□□ -0.78
PTPN4-207ENST00000460162 NEBP20929 6669 aa10.14□□□□□ -0.79
PTPN4-207ENST00000460162 F8W1H4 67 aa10.14□□□□□ -0.79
PTPN4-207ENST00000460162 KRTAP3-3Q9BYR6 98 aa10.13□□□□□ -0.79
PTPN4-207ENST00000460162 CYP4F30PQ9H0H9 118 aa10.13□□□□□ -0.79
PTPN4-207ENST00000460162 ETDBQ3ZM63 59 aa10.12□□□□□ -0.79
PTPN4-207ENST00000460162 TRAV22A0A0B4J277 110 aa10.09□□□□□ -0.79
PTPN4-207ENST00000460162 KRTAP10-5P60370 271 aa10.09□□□□□ -0.79
PTPN4-207ENST00000460162 LOC101927531A0A1B0GV80 90 aa10.07□□□□□ -0.8
PTPN4-207ENST00000460162 CRIPTQ9P021 101 aa10.05□□□□□ -0.8
PTPN4-207ENST00000460162 MUC12Q9UKN1 5478 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms