RNA–Protein interactions for RNA: ENST00000457745.1

RIF1-208, Transcript of replication timing regulatory factor 1, human

TSL 1 (best)

Gene RIF1, Length 1,006 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RIF1-208	ENST00000457745		Q8N9L7	120 aa		5.01	□□□□□ -1.61
RIF1-208	ENST00000457745	TYMSOS	Q8TAI1	123 aa		5.01	□□□□□ -1.61
RIF1-208	ENST00000457745	KRTAP10-8	P60410	259 aa		5	□□□□□ -1.61
RIF1-208	ENST00000457745	TNXB	P22105	4242 aa		4.99	□□□□□ -1.61
RIF1-208	ENST00000457745	BPY2	O14599	106 aa		4.99	□□□□□ -1.61
RIF1-208	ENST00000457745	DSCR10	P59022	87 aa		4.99	□□□□□ -1.61
RIF1-208	ENST00000457745	LINC00472	Q9H8W2	130 aa		4.99	□□□□□ -1.61
RIF1-208	ENST00000457745		A0A087WVE0	104 aa		4.98	□□□□□ -1.61
RIF1-208	ENST00000457745	LINC00643	Q86TS7	51 aa		4.98	□□□□□ -1.61
RIF1-208	ENST00000457745	SIGMAR1	Q99720	223 aa		4.98	□□□□□ -1.61
RIF1-208	ENST00000457745	KRTAP23-1	A1A580	65 aa		4.97	□□□□□ -1.61
RIF1-208	ENST00000457745	MYCBP2	O75592	4640 aa		4.96	□□□□□ -1.61
RIF1-208	ENST00000457745	CD164	Q04900	197 aa		4.96	□□□□□ -1.62
RIF1-208	ENST00000457745	NREP	Q16612	68 aa		4.96	□□□□□ -1.62
RIF1-208	ENST00000457745	LINC00304	Q8N9R0	145 aa		4.96	□□□□□ -1.62
RIF1-208	ENST00000457745	UBL5	Q9BZL1	73 aa		4.96	□□□□□ -1.62
RIF1-208	ENST00000457745	IGKV4-1	P06312	121 aa		4.95	□□□□□ -1.62
RIF1-208	ENST00000457745	C1orf195	Q5TG92	126 aa		4.95	□□□□□ -1.62
RIF1-208	ENST00000457745		K7EQZ3	153 aa		4.94	□□□□□ -1.62
RIF1-208	ENST00000457745	NOTCH2NL	Q7Z3S9	236 aa		4.94	□□□□□ -1.62
RIF1-208	ENST00000457745	RETNLB	Q9BQ08	111 aa		4.94	□□□□□ -1.62
RIF1-208	ENST00000457745		A0A1B0GW54	56 aa		4.93	□□□□□ -1.62
RIF1-208	ENST00000457745	ASB16-AS1	Q495Z4	193 aa		4.91	□□□□□ -1.62
RIF1-208	ENST00000457745		Q5XG85	94 aa		4.91	□□□□□ -1.62
RIF1-208	ENST00000457745	CXCL6	P80162	114 aa		4.9	□□□□□ -1.63
RIF1-208	ENST00000457745	SPINK1	P00995	79 aa		4.89	□□□□□ -1.63
RIF1-208	ENST00000457745	ATP5EP2	Q5VTU8	51 aa		4.89	□□□□□ -1.63
RIF1-208	ENST00000457745	DMBT1	Q9UGM3	2413 aa	Predicted RBP	4.89	□□□□□ -1.63
RIF1-208	ENST00000457745	MMP24-AS1	A0A0U1RRL7	71 aa		4.88	□□□□□ -1.63
RIF1-208	ENST00000457745	HIST1H4A	P62805	103 aa	Known RBP	4.88	□□□□□ -1.63
RIF1-208	ENST00000457745	PCLO	Q9Y6V0	5065 aa		4.87	□□□□□ -1.63
RIF1-208	ENST00000457745		A8MWP4	228 aa		4.87	□□□□□ -1.63
RIF1-208	ENST00000457745	KRTAP29-1	A8MX34	341 aa	Predicted RBP	4.87	□□□□□ -1.63
RIF1-208	ENST00000457745	PRR15	Q8IV56	129 aa		4.87	□□□□□ -1.63
RIF1-208	ENST00000457745	SS18L2	Q9UHA2	77 aa		4.87	□□□□□ -1.63
RIF1-208	ENST00000457745	RPS29	P62273	56 aa	Known RBP	4.86	□□□□□ -1.63
RIF1-208	ENST00000457745	SPAG11A	Q6PDA7	123 aa		4.86	□□□□□ -1.63
RIF1-208	ENST00000457745	IGHV6-1	A0A0B4J1U7	121 aa		4.85	□□□□□ -1.63
RIF1-208	ENST00000457745	FAM236A	A0A1B0GUQ0	79 aa		4.85	□□□□□ -1.63
RIF1-208	ENST00000457745	FAM236B	A0A1B0GV22	79 aa		4.85	□□□□□ -1.63
RIF1-208	ENST00000457745		A0A1B0GVX0	72 aa		4.85	□□□□□ -1.63
RIF1-208	ENST00000457745	OXT	P01178	125 aa		4.85	□□□□□ -1.63
RIF1-208	ENST00000457745	WFDC13	Q8IUB5	93 aa		4.85	□□□□□ -1.63
RIF1-208	ENST00000457745	KRTAP16-1	A8MUX0	517 aa		4.84	□□□□□ -1.63
RIF1-208	ENST00000457745	LIMD2	Q9BT23	127 aa		4.84	□□□□□ -1.63
RIF1-208	ENST00000457745	C8orf17	Q9NRJ1	99 aa		4.84	□□□□□ -1.63
RIF1-208	ENST00000457745	IMUP	Q9GZP8	106 aa		4.83	□□□□□ -1.64
RIF1-208	ENST00000457745		J3KT08	172 aa		4.82	□□□□□ -1.64
RIF1-208	ENST00000457745	HCG22	E2RYF7	251 aa		4.81	□□□□□ -1.64
RIF1-208	ENST00000457745	C9orf92	A6NGG3	77 aa		4.8	□□□□□ -1.64
RIF1-208	ENST00000457745	CASC2	Q6XLA1	102 aa		4.78	□□□□□ -1.64
RIF1-208	ENST00000457745	SCGB1A1	P11684	91 aa		4.77	□□□□□ -1.65
RIF1-208	ENST00000457745	OCR1	Q9BZK8	76 aa		4.77	□□□□□ -1.65
RIF1-208	ENST00000457745	hDV103S1	A0JD37	113 aa		4.76	□□□□□ -1.65
RIF1-208	ENST00000457745	NDUFB1	O75438	58 aa		4.76	□□□□□ -1.65
RIF1-208	ENST00000457745	KRTAP13-3	Q3SY46	172 aa		4.75	□□□□□ -1.65
RIF1-208	ENST00000457745	IGLV7-46	A0A075B6I9	117 aa		4.74	□□□□□ -1.65
RIF1-208	ENST00000457745	C8orf87	E5RJ46	101 aa		4.74	□□□□□ -1.65
RIF1-208	ENST00000457745	LINC00313	P59037	77 aa		4.74	□□□□□ -1.65
RIF1-208	ENST00000457745		Q5W150	140 aa		4.74	□□□□□ -1.65
RIF1-208	ENST00000457745	TMEM254	Q8TBM7	123 aa		4.74	□□□□□ -1.65
RIF1-208	ENST00000457745	MRPL34	Q9BQ48	92 aa	Known RBP	4.74	□□□□□ -1.65
RIF1-208	ENST00000457745	CYSTM1	Q9H1C7	97 aa		4.74	□□□□□ -1.65
RIF1-208	ENST00000457745	CCDC179	H3BU77	68 aa		4.72	□□□□□ -1.65
RIF1-208	ENST00000457745	PRR4	Q16378	134 aa		4.72	□□□□□ -1.65
RIF1-208	ENST00000457745	LPA	P08519	4548 aa		4.72	□□□□□ -1.65
RIF1-208	ENST00000457745	ATOX1	O00244	68 aa		4.71	□□□□□ -1.66
RIF1-208	ENST00000457745	FP248	Q71RG6	208 aa	Predicted RBP	4.71	□□□□□ -1.66
RIF1-208	ENST00000457745		Q8N9P0	234 aa	Predicted RBP	4.71	□□□□□ -1.66
RIF1-208	ENST00000457745	ANAPC13	Q9BS18	74 aa		4.7	□□□□□ -1.66
RIF1-208	ENST00000457745		A8MUU9	505 aa		4.69	□□□□□ -1.66
RIF1-208	ENST00000457745	PCP4	P48539	62 aa		4.69	□□□□□ -1.66
RIF1-208	ENST00000457745	KRTAP15-1	Q3LI76	137 aa		4.69	□□□□□ -1.66
RIF1-208	ENST00000457745	SERP2	Q8N6R1	65 aa		4.69	□□□□□ -1.66
RIF1-208	ENST00000457745	TRAV7	A0A075B6U4	112 aa		4.68	□□□□□ -1.66
RIF1-208	ENST00000457745	C20orf166-AS1	Q96NR2	134 aa		4.68	□□□□□ -1.66
RIF1-208	ENST00000457745	HERC1	Q15751	4861 aa		4.68	□□□□□ -1.66
RIF1-208	ENST00000457745	NDUFS5	O43920	106 aa		4.67	□□□□□ -1.66
RIF1-208	ENST00000457745	HMCN2	Q8NDA2	5059 aa		4.66	□□□□□ -1.66
RIF1-208	ENST00000457745	COX7C	P15954	63 aa		4.66	□□□□□ -1.66
RIF1-208	ENST00000457745		A0A0U1RQV1	116 aa		4.65	□□□□□ -1.67
RIF1-208	ENST00000457745	LRP2	P98164	4655 aa		4.65	□□□□□ -1.67
RIF1-208	ENST00000457745	ZCCHC13	Q8WW36	166 aa	Known RBP	4.65	□□□□□ -1.67
RIF1-208	ENST00000457745	SNURF	Q9Y675	71 aa		4.65	□□□□□ -1.67
RIF1-208	ENST00000457745	TPRXL	Q17RH7	258 aa		4.64	□□□□□ -1.67
RIF1-208	ENST00000457745	C20orf197	Q8N268	126 aa		4.64	□□□□□ -1.67
RIF1-208	ENST00000457745		H0Y9P7	68 aa		4.63	□□□□□ -1.67
RIF1-208	ENST00000457745	UQCRQ	O14949	82 aa		4.63	□□□□□ -1.67
RIF1-208	ENST00000457745	RPL37	P61927	97 aa	Known RBP	4.63	□□□□□ -1.67
RIF1-208	ENST00000457745		Q75L30	129 aa		4.62	□□□□□ -1.67
RIF1-208	ENST00000457745	TRAV22	A0A0B4J277	110 aa		4.61	□□□□□ -1.67
RIF1-208	ENST00000457745	KRTAP4-1	Q9BYQ7	146 aa		4.61	□□□□□ -1.67
RIF1-208	ENST00000457745	KLKP1	Q107X0	134 aa		4.6	□□□□□ -1.67
RIF1-208	ENST00000457745	SMIM20	Q8N5G0	67 aa		4.6	□□□□□ -1.67
RIF1-208	ENST00000457745	LINC00208	Q96KT6	92 aa		4.6	□□□□□ -1.67
RIF1-208	ENST00000457745	TP53AIP1	Q9HCN2	124 aa		4.59	□□□□□ -1.67
RIF1-208	ENST00000457745	IGKV2-30	P06310	120 aa		4.58	□□□□□ -1.68
RIF1-208	ENST00000457745	PCOTH	Q58A44	107 aa		4.58	□□□□□ -1.68
RIF1-208	ENST00000457745	C5orf47	Q569G3	176 aa		4.57	□□□□□ -1.68
RIF1-208	ENST00000457745	C1orf64	Q8NEQ6	169 aa		4.57	□□□□□ -1.68

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