RNA–Protein interactions for RNA: ENST00000451893.5

C9orf3-208, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 514 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-208ENST00000451893 MT-ATP8P03928 68 aa12.07□□□□□ -0.48
C9orf3-208ENST00000451893 CXCL6P80162 114 aa12.07□□□□□ -0.48
C9orf3-208ENST00000451893 ASB16-AS1Q495Z4 193 aa12.07□□□□□ -0.48
C9orf3-208ENST00000451893 FAT4Q6V0I7 4981 aa12.02□□□□□ -0.48
C9orf3-208ENST00000451893 BPY2O14599 106 aa12.01□□□□□ -0.49
C9orf3-208ENST00000451893 LCE2AQ5TA79 106 aaPredicted RBP12□□□□□ -0.49
C9orf3-208ENST00000451893 Q5XG85 94 aa12□□□□□ -0.49
C9orf3-208ENST00000451893 IGKV3D-7A0A0C4DH55 119 aa11.99□□□□□ -0.49
C9orf3-208ENST00000451893 J3KT08 172 aa11.97□□□□□ -0.49
C9orf3-208ENST00000451893 XP32Q5T750 250 aa11.96□□□□□ -0.49
C9orf3-208ENST00000451893 LINC00472Q9H8W2 130 aa11.96□□□□□ -0.49
C9orf3-208ENST00000451893 C9orf92A6NGG3 77 aa11.92□□□□□ -0.5
C9orf3-208ENST00000451893 SCGB1A1P11684 91 aa11.92□□□□□ -0.5
C9orf3-208ENST00000451893 KRTAP9-2Q9BYQ4 174 aa11.91□□□□□ -0.5
C9orf3-208ENST00000451893 HIST1H4AP62805 103 aaKnown RBP11.88□□□□□ -0.51
C9orf3-208ENST00000451893 DSCR10P59022 87 aa11.86□□□□□ -0.51
C9orf3-208ENST00000451893 Q96NJ1 140 aa11.86□□□□□ -0.51
C9orf3-208ENST00000451893 KRTAP4-1Q9BYQ7 146 aa11.85□□□□□ -0.51
C9orf3-208ENST00000451893 A8MWP4 228 aa11.83□□□□□ -0.52
C9orf3-208ENST00000451893 NDUFB1O75438 58 aa11.83□□□□□ -0.52
C9orf3-208ENST00000451893 IGKV4-1P06312 121 aa11.82□□□□□ -0.52
C9orf3-208ENST00000451893 DEFB116Q30KQ4 102 aa11.81□□□□□ -0.52
C9orf3-208ENST00000451893 PCOTHQ58A44 107 aa11.81□□□□□ -0.52
C9orf3-208ENST00000451893 PRR15Q8IV56 129 aa11.79□□□□□ -0.52
C9orf3-208ENST00000451893 K7EQZ3 153 aa11.76□□□□□ -0.53
C9orf3-208ENST00000451893 C1orf195Q5TG92 126 aa11.76□□□□□ -0.53
C9orf3-208ENST00000451893 A0A087WVE0 104 aa11.75□□□□□ -0.53
C9orf3-208ENST00000451893 Q8N9L7 120 aa11.75□□□□□ -0.53
C9orf3-208ENST00000451893 FAM236AA0A1B0GUQ0 79 aa11.73□□□□□ -0.53
C9orf3-208ENST00000451893 FAM236BA0A1B0GV22 79 aa11.73□□□□□ -0.53
C9orf3-208ENST00000451893 A0A1B0GVX0 72 aa11.7□□□□□ -0.54
C9orf3-208ENST00000451893 ATOX1O00244 68 aa11.68□□□□□ -0.54
C9orf3-208ENST00000451893 HCG22E2RYF7 251 aa11.67□□□□□ -0.54
C9orf3-208ENST00000451893 C8orf87E5RJ46 101 aa11.65□□□□□ -0.54
C9orf3-208ENST00000451893 SMIM20Q8N5G0 67 aa11.65□□□□□ -0.54
C9orf3-208ENST00000451893 RPL37P61927 97 aaKnown RBP11.63□□□□□ -0.55
C9orf3-208ENST00000451893 IGHV6-1A0A0B4J1U7 121 aa11.62□□□□□ -0.55
C9orf3-208ENST00000451893 C8orf17Q9NRJ1 99 aa11.62□□□□□ -0.55
C9orf3-208ENST00000451893 CASC2Q6XLA1 102 aa11.6□□□□□ -0.55
C9orf3-208ENST00000451893 MMP24-AS1A0A0U1RRL7 71 aa11.59□□□□□ -0.55
C9orf3-208ENST00000451893 KRTAP9-6A0A140TA67 174 aa11.57□□□□□ -0.56
C9orf3-208ENST00000451893 hDV103S1A0JD37 113 aa11.57□□□□□ -0.56
C9orf3-208ENST00000451893 COX6B2Q6YFQ2 88 aa11.57□□□□□ -0.56
C9orf3-208ENST00000451893 ANAPC13Q9BS18 74 aa11.57□□□□□ -0.56
C9orf3-208ENST00000451893 LINC00313P59037 77 aa11.56□□□□□ -0.56
C9orf3-208ENST00000451893 WFDC13Q8IUB5 93 aa11.55□□□□□ -0.56
C9orf3-208ENST00000451893 TMEM254Q8TBM7 123 aa11.54□□□□□ -0.56
C9orf3-208ENST00000451893 TRAV7A0A075B6U4 112 aa11.52□□□□□ -0.57
C9orf3-208ENST00000451893 LCE2CQ5TA81 110 aa11.52□□□□□ -0.57
C9orf3-208ENST00000451893 SERP2Q8N6R1 65 aa11.51□□□□□ -0.57
C9orf3-208ENST00000451893 M0R2T5 61 aa11.5□□□□□ -0.57
C9orf3-208ENST00000451893 PCP4P48539 62 aa11.49□□□□□ -0.57
C9orf3-208ENST00000451893 MT1HP80294 61 aa11.49□□□□□ -0.57
C9orf3-208ENST00000451893 ATP11AUNQ6ZP68 121 aa11.49□□□□□ -0.57
C9orf3-208ENST00000451893 MRPL34Q9BQ48 92 aaKnown RBP11.49□□□□□ -0.57
C9orf3-208ENST00000451893 KRTAP19-2Q3LHN2 52 aa11.47□□□□□ -0.57
C9orf3-208ENST00000451893 OCR1Q9BZK8 76 aa11.47□□□□□ -0.57
C9orf3-208ENST00000451893 NOTCH2NLQ7Z3S9 236 aa11.46□□□□□ -0.57
C9orf3-208ENST00000451893 TP53AIP1Q9HCN2 124 aa11.46□□□□□ -0.57
C9orf3-208ENST00000451893 LCE2DQ5TA82 110 aaPredicted RBP11.45□□□□□ -0.58
C9orf3-208ENST00000451893 COX7CP15954 63 aa11.44□□□□□ -0.58
C9orf3-208ENST00000451893 UQCRQO14949 82 aa11.42□□□□□ -0.58
C9orf3-208ENST00000451893 Q75L30 129 aa11.4□□□□□ -0.58
C9orf3-208ENST00000451893 Q8N9P0 234 aaPredicted RBP11.39□□□□□ -0.59
C9orf3-208ENST00000451893 KRTAP16-1A8MUX0 517 aa11.38□□□□□ -0.59
C9orf3-208ENST00000451893 C5orf47Q569G3 176 aa11.38□□□□□ -0.59
C9orf3-208ENST00000451893 NDUFS5O43920 106 aa11.35□□□□□ -0.59
C9orf3-208ENST00000451893 KRTAP10-6P60371 365 aaPredicted RBP11.3□□□□□ -0.6
C9orf3-208ENST00000451893 H3BPC8 53 aa11.29□□□□□ -0.6
C9orf3-208ENST00000451893 MP68P56378 58 aa11.29□□□□□ -0.6
C9orf3-208ENST00000451893 TRAV22A0A0B4J277 110 aa11.26□□□□□ -0.61
C9orf3-208ENST00000451893 C20orf166-AS1Q96NR2 134 aa11.26□□□□□ -0.61
C9orf3-208ENST00000451893 CCDC179H3BU77 68 aa11.25□□□□□ -0.61
C9orf3-208ENST00000451893 LORP23490 312 aaPredicted RBP11.25□□□□□ -0.61
C9orf3-208ENST00000451893 CRCT1Q9UGL9 99 aa11.25□□□□□ -0.61
C9orf3-208ENST00000451893 A8MUU9 505 aa11.24□□□□□ -0.61
C9orf3-208ENST00000451893 C20orf197Q8N268 126 aa11.23□□□□□ -0.61
C9orf3-208ENST00000451893 H0Y9P7 68 aa11.22□□□□□ -0.61
C9orf3-208ENST00000451893 KLKP1Q107X0 134 aa11.22□□□□□ -0.61
C9orf3-208ENST00000451893 FSIP2Q5CZC0 6907 aa11.19□□□□□ -0.62
C9orf3-208ENST00000451893 NDUFC1O43677 76 aa11.16□□□□□ -0.62
C9orf3-208ENST00000451893 LINC00208Q96KT6 92 aa11.14□□□□□ -0.63
C9orf3-208ENST00000451893 Q5W150 140 aa11.13□□□□□ -0.63
C9orf3-208ENST00000451893 C1orf64Q8NEQ6 169 aa11.13□□□□□ -0.63
C9orf3-208ENST00000451893 ZCCHC13Q8WW36 166 aaKnown RBP11.13□□□□□ -0.63
C9orf3-208ENST00000451893 LOC101927531A0A1B0GV80 90 aa11.11□□□□□ -0.63
C9orf3-208ENST00000451893 SNURFQ9Y675 71 aa11.11□□□□□ -0.63
C9orf3-208ENST00000451893 FLGP20930 4061 aaPredicted RBP11.11□□□□□ -0.63
C9orf3-208ENST00000451893 FAM236DA0A1B0GTK5 79 aa11.1□□□□□ -0.63
C9orf3-208ENST00000451893 FAM236CP0DP71 79 aa11.1□□□□□ -0.63
C9orf3-208ENST00000451893 RBM12B-AS1Q9P1G2 102 aa11.01□□□□□ -0.65
C9orf3-208ENST00000451893 H7BZZ5 65 aa11□□□□□ -0.65
C9orf3-208ENST00000451893 IGKV2-30P06310 120 aa11□□□□□ -0.65
C9orf3-208ENST00000451893 CYP4F30PQ9H0H9 118 aa10.99□□□□□ -0.65
C9orf3-208ENST00000451893 CYSTM1Q9H1C7 97 aa10.98□□□□□ -0.65
C9orf3-208ENST00000451893 TMEM258P61165 79 aa10.96□□□□□ -0.65
C9orf3-208ENST00000451893 C7orf65Q6ZTY9 151 aa10.94□□□□□ -0.66
C9orf3-208ENST00000451893 IGKV2D-30A0A075B6S6 120 aa10.9□□□□□ -0.66
C9orf3-208ENST00000451893 SPANXA2-OT1Q8N9U9 137 aa10.9□□□□□ -0.66
C9orf3-208ENST00000451893 ATP5EP56381 51 aaPredicted RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 249.8 ms