RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 SSPOA2VEC9 5147 aa10.36□□□□□ -0.75
SDC1-205ENST00000447124 C9JAW5 83 aa10.35□□□□□ -0.75
SDC1-205ENST00000447124 FAM236DA0A1B0GTK5 79 aa10.34□□□□□ -0.75
SDC1-205ENST00000447124 FAM236CP0DP71 79 aa10.34□□□□□ -0.75
SDC1-205ENST00000447124 Q6ZQT0 140 aa10.34□□□□□ -0.75
SDC1-205ENST00000447124 NAA38Q9BRA0 125 aaKnown RBP10.33□□□□□ -0.76
SDC1-205ENST00000447124 RBM12B-AS1Q9P1G2 102 aa10.31□□□□□ -0.76
SDC1-205ENST00000447124 MT2AP02795 61 aa10.3□□□□□ -0.76
SDC1-205ENST00000447124 J3KT08 172 aa10.29□□□□□ -0.76
SDC1-205ENST00000447124 C21orf62-AS1Q17RA5 79 aa10.27□□□□□ -0.77
SDC1-205ENST00000447124 ZCCHC13Q8WW36 166 aaKnown RBP10.27□□□□□ -0.77
SDC1-205ENST00000447124 ATXN8Q156A1 80 aa10.26□□□□□ -0.77
SDC1-205ENST00000447124 M0R143 59 aa10.24□□□□□ -0.77
SDC1-205ENST00000447124 Q8N9P0 234 aaPredicted RBP10.24□□□□□ -0.77
SDC1-205ENST00000447124 LOC110117498A0A087WWA1 95 aa10.23□□□□□ -0.77
SDC1-205ENST00000447124 JMJD7-PLA2G4BH0Y9G9 81 aa10.23□□□□□ -0.77
SDC1-205ENST00000447124 MT1FP04733 61 aa10.23□□□□□ -0.77
SDC1-205ENST00000447124 SPINK7P58062 85 aa10.22□□□□□ -0.77
SDC1-205ENST00000447124 NDUFB1O75438 58 aa10.2□□□□□ -0.78
SDC1-205ENST00000447124 C8orf17Q9NRJ1 99 aa10.2□□□□□ -0.78
SDC1-205ENST00000447124 IGKV3D-7A0A0C4DH55 119 aa10.19□□□□□ -0.78
SDC1-205ENST00000447124 A8MWP4 228 aa10.19□□□□□ -0.78
SDC1-205ENST00000447124 A0A1B0GW54 56 aa10.18□□□□□ -0.78
SDC1-205ENST00000447124 KRTAP9-3Q9BYQ3 159 aa10.17□□□□□ -0.78
SDC1-205ENST00000447124 C14orf132Q9NPU4 83 aa10.17□□□□□ -0.78
SDC1-205ENST00000447124 LCE2BO14633 110 aa10.15□□□□□ -0.78
SDC1-205ENST00000447124 PDE6GP18545 87 aa10.15□□□□□ -0.78
SDC1-205ENST00000447124 KRTAP10-10P60014 251 aa10.13□□□□□ -0.79
SDC1-205ENST00000447124 MTURNQ8N3F0 131 aa10.12□□□□□ -0.79
SDC1-205ENST00000447124 FCGBPQ9Y6R7 5405 aaPredicted RBP10.11□□□□□ -0.79
SDC1-205ENST00000447124 SMIM6P0DI80 62 aa10.1□□□□□ -0.79
SDC1-205ENST00000447124 Q6ZVQ6 151 aa10.1□□□□□ -0.79
SDC1-205ENST00000447124 PRR15Q8IV56 129 aa10.1□□□□□ -0.79
SDC1-205ENST00000447124 NREPQ16612 68 aa10.08□□□□□ -0.8
SDC1-205ENST00000447124 LYRM7Q5U5X0 104 aa10.08□□□□□ -0.8
SDC1-205ENST00000447124 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.06□□□□□ -0.8
SDC1-205ENST00000447124 BATFQ16520 125 aa10.05□□□□□ -0.8
SDC1-205ENST00000447124 MMP24-AS1A0A0U1RRL7 71 aa10.04□□□□□ -0.8
SDC1-205ENST00000447124 WFDC13Q8IUB5 93 aa10.04□□□□□ -0.8
SDC1-205ENST00000447124 MRPL34Q9BQ48 92 aaKnown RBP10.01□□□□□ -0.81
SDC1-205ENST00000447124 KRTAP19-1Q8IUB9 90 aa10□□□□□ -0.81
SDC1-205ENST00000447124 TMEM254Q8TBM7 123 aa10□□□□□ -0.81
SDC1-205ENST00000447124 C9orf118A6NHY6 69 aa9.99□□□□□ -0.81
SDC1-205ENST00000447124 TSTD3H0UI37 97 aa9.98□□□□□ -0.81
SDC1-205ENST00000447124 K7EQZ3 153 aa9.97□□□□□ -0.81
SDC1-205ENST00000447124 TAX1BP3O14907 124 aa9.97□□□□□ -0.81
SDC1-205ENST00000447124 H3BT86 120 aa9.96□□□□□ -0.82
SDC1-205ENST00000447124 KRTAP9-7A8MTY7 169 aa9.95□□□□□ -0.82
SDC1-205ENST00000447124 hDV103S1A0JD37 113 aa9.94□□□□□ -0.82
SDC1-205ENST00000447124 A0A1W2PPM0 123 aa9.93□□□□□ -0.82
SDC1-205ENST00000447124 LOC105371267A0A1B0GV96 52 aa9.89□□□□□ -0.83
SDC1-205ENST00000447124 Q5W150 140 aa9.89□□□□□ -0.83
SDC1-205ENST00000447124 BPY2O14599 106 aa9.88□□□□□ -0.83
SDC1-205ENST00000447124 NDUFS5O43920 106 aa9.88□□□□□ -0.83
SDC1-205ENST00000447124 H1FX-AS1Q4G0G2 97 aa9.86□□□□□ -0.83
SDC1-205ENST00000447124 Q8N9L7 120 aa9.83□□□□□ -0.84
SDC1-205ENST00000447124 IGKV2D-30A0A075B6S6 120 aa9.81□□□□□ -0.84
SDC1-205ENST00000447124 IGKV2-30P06310 120 aa9.81□□□□□ -0.84
SDC1-205ENST00000447124 SMCPP49901 116 aaPredicted RBP9.81□□□□□ -0.84
SDC1-205ENST00000447124 KRTAP19-6Q3LI70 58 aa9.78□□□□□ -0.84
SDC1-205ENST00000447124 SPCS1Q9Y6A9 102 aa9.78□□□□□ -0.84
SDC1-205ENST00000447124 CASC2Q6XLA1 102 aa9.76□□□□□ -0.85
SDC1-205ENST00000447124 C7orf65Q6ZTY9 151 aa9.76□□□□□ -0.85
SDC1-205ENST00000447124 HCG22E2RYF7 251 aa9.75□□□□□ -0.85
SDC1-205ENST00000447124 MACF1Q9UPN3 7388 aaKnown RBP9.75□□□□□ -0.85
SDC1-205ENST00000447124 SYNE2Q8WXH0 6885 aaKnown RBP9.72□□□□□ -0.85
SDC1-205ENST00000447124 LINC00846Q9NV44 126 aa9.7□□□□□ -0.86
SDC1-205ENST00000447124 PRO0461Q9UI25 63 aa9.7□□□□□ -0.86
SDC1-205ENST00000447124 C4orf26Q17RF5 130 aa9.68□□□□□ -0.86
SDC1-205ENST00000447124 CXCL6P80162 114 aa9.65□□□□□ -0.86
SDC1-205ENST00000447124 COL5A1-AS1Q5SY13 56 aa9.61□□□□□ -0.87
SDC1-205ENST00000447124 KRTAP3-1Q9BYR8 98 aa9.61□□□□□ -0.87
SDC1-205ENST00000447124 UBL5Q9BZL1 73 aa9.61□□□□□ -0.87
SDC1-205ENST00000447124 K7EP34 96 aa9.59□□□□□ -0.87
SDC1-205ENST00000447124 C5orf47Q569G3 176 aa9.53□□□□□ -0.88
SDC1-205ENST00000447124 C1orf64Q8NEQ6 169 aa9.48□□□□□ -0.89
SDC1-205ENST00000447124 S4R3F8 94 aa9.45□□□□□ -0.9
SDC1-205ENST00000447124 LCA10Q71F78 164 aa9.42□□□□□ -0.9
SDC1-205ENST00000447124 TP53AIP1Q9HCN2 124 aa9.42□□□□□ -0.9
SDC1-205ENST00000447124 ETDBQ3ZM63 59 aa9.41□□□□□ -0.9
SDC1-205ENST00000447124 CSAG1Q6PB30 78 aa9.41□□□□□ -0.9
SDC1-205ENST00000447124 F8W1H4 67 aa9.4□□□□□ -0.9
SDC1-205ENST00000447124 GTF2H5Q6ZYL4 71 aa9.4□□□□□ -0.9
SDC1-205ENST00000447124 FAM236AA0A1B0GUQ0 79 aa9.39□□□□□ -0.91
SDC1-205ENST00000447124 FAM236BA0A1B0GV22 79 aa9.39□□□□□ -0.91
SDC1-205ENST00000447124 MT1BP07438 61 aa9.37□□□□□ -0.91
SDC1-205ENST00000447124 KRTAP6-3Q3LI67 103 aa9.37□□□□□ -0.91
SDC1-205ENST00000447124 KRTAP3-3Q9BYR6 98 aa9.34□□□□□ -0.91
SDC1-205ENST00000447124 SPRR2GQ9BYE4 73 aa9.33□□□□□ -0.92
SDC1-205ENST00000447124 KRTAP19-8Q3LI54 63 aa9.32□□□□□ -0.92
SDC1-205ENST00000447124 CYP4F30PQ9H0H9 118 aa9.32□□□□□ -0.92
SDC1-205ENST00000447124 A0A087WVE0 104 aa9.28□□□□□ -0.92
SDC1-205ENST00000447124 PCP4L1A6NKN8 68 aa9.28□□□□□ -0.92
SDC1-205ENST00000447124 Q5VV11 94 aa9.27□□□□□ -0.93
SDC1-205ENST00000447124 A6NN06 94 aa9.24□□□□□ -0.93
SDC1-205ENST00000447124 KLKP1Q107X0 134 aa9.24□□□□□ -0.93
SDC1-205ENST00000447124 TRAV22A0A0B4J277 110 aa9.2□□□□□ -0.94
SDC1-205ENST00000447124 LOC101927531A0A1B0GV80 90 aa9.18□□□□□ -0.94
SDC1-205ENST00000447124 NEBP20929 6669 aa9.17□□□□□ -0.94
SDC1-205ENST00000447124 ACYP1P07311 99 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms